NONHSAT096836

From LncRNAWiki
Jump to: navigation, search

Please input one-sentence summary here.

Annotated Information

Transcriptomic Nomeclature

Please input transcriptomic nomeclature information here.

Function

Please input function information here.

Regulation

Please input regulation information here.

Expression

Please input expression information here.

Allelic Information and Variation

Please input allelic information and variation information here.

Evolution

Please input evolution information here.

You can also add sub-section(s) at will.

Labs working on this lncRNA

Please input related labs here.

References

Please input cited references here.

Basic Information

Transcript ID

NONHSAT096836

Source

NONCODE4.0

Same with

,

Classification

intergenic

Length

6052 nt

Genomic location

chr4+:74124504..74130555

Exon number

1

Exons

74124504..74130555

Genome context

Sequence
000001 gtcacctcta ctgccgccgc cgccgccgcc gcTCCGCCAG CTCTCACCTC GTCTCGCGAT ACTAAGGGCG GGGAGCCTGA 000080
000081 CGATgggagg gagggaggga gggagaggga gggagcaagg gaaggagggT GAGGCGTAAC AGGGAGACCG GGTGTCGGGA 000160
000161 GAACCAGAGG AGAGGAGACT GGAAAGAAGC GGGGAAGTGT GCCTGGGGCA GCTTCCGAAG GGGAACGGCG GGGACAGATG 000240
000241 AGGGGGGCGC GATTGCAACC AGAGCGCCCG CGAGCTCCCG GATTTCTTCT CTTTCCTCGC TATTTCCCGC ACACACAGCC 000320
000321 CTGCAGCCCT CCCTTCTTCC TTCCTGGCTT GTGATTAGAA CGCAGCCGCA GGCGGAAGTG CAGTGACGCC ATCAGCCGTC 000400
000401 GCCTGAGCCG TGGCGCGCGG GTGGCCGAAA GGCGAAAGTG AGATTTCAAG GGCCGGGTCT GGGGCCCCGC GGGCGCGCAG 000480
000481 TGCTGCGGCG TGTGGGGAGT ACGGGGAGGC TGGAGAGGAG CCGGCCCCGG GCAGTGTGAG GTGCGGAAGC GCGGTCCAGA 000560
000561 CACTTTGCTG ACGGGAGGCC GGTCCGCCAG ATCCGGGAGG TGGGGCCTCG TTCTGGACTG CTGTACGTAG TTTTATTCCT 000640
000641 GGTCATTTTT TTCCACCGCC AAATCGAGAG ATAGAGCTTT GGATCATGAG AGATGGCGTC GTGTTGGGAA AAGAGCCTTC 000720
000721 TTTACCTGAG TTTAAGCTCG GCTCATAGAC ATCctctacc tgagtttaca cgtgtgtaat atgaaggcag tcgattagga 000800
000801 gatgtctaag atcATTACTT ACACCTCAAG TTTCCAAGGG GAGGAAGACA CGGGAAGGAT GCGTGGTCTG TGCCAGACTT 000880
000881 TGTAGACGAT TCACTGAATG ACCCTGATTT AGCTCTTCCG GCCCTCTTCG ATTCAGCTTG GAAGCAAGCA TAAATAGTGA 000960
000961 TTGTTGTCTG TATACTTCTC TCGGAAGGAA TGCTGTTATG GGAGTTGTGG GTTCATTTTT AGGTGTCTGA AGAAGTTTCA 001040
001041 GGACTTTTGA AATGATAGTG GAGCCCATTG AACTCAGAAT TATCCCTTTC TGGTCTAGTA GGAGTATAGT GGCATACGGA 001120
001121 AAATGAAGCA AACATCAAAG ACAGATGTAC TGGCACAAGA TTAAAAGTAT GTCTCAGCTG ACATAGTTGC CATTTTAAGA 001200
001201 CTGCTTAGTT TAGCTGAATA TGCCTGGATT TTTTTTTTTT TTAGCATTTT TTTTCTTTTT AGCATTGGCA TACCATATGA 001280
001281 AATGTGGGCA GTTGCCAGTA CTCTACAGAG TACCAAGGCA GAATTGGCAA TGACTAAATC Aattcattca aacaaaaatt 001360
001361 catcatgtgc ctactgtgcg cATAATTTGT GGAATCAAAG TCTCTTGTTT CCAGGGGCTT TACAGTGTAA TAAGTGCTAT 001440
001441 AGTAAATATA TATACGGAGT GGTAACCATC TGCCTATTCC TCTCCTACAG TCGTTGCTGA GTTCCAGTGT AGAACAGAGC 001520
001521 ACTGCATTGT GTATCTCACC ACTACTGATT TAGATTTTAT AATTTCAGCT GCATCCCTCC CTCCTACTTT GTATATTCTT 001600
001601 CAGCATCTTT TTCTCCCTTT CCACTTGAAT ACTTTTCGCA ATCTTTAAAT CCCAGCCCAT TTTATTATAT GACTTTTAAC 001680
001681 TTAGACTTCA CAATTTTCCA AGTGCTAGAA ATTTCCTGAG ATTGCCTTTT CTCCAGTATC AACGAATGAG AGACTCCCTG 001760
001761 TTCATATATG AGATAAACTC TTCATACATA TTCTAGTTCC AATACCCCTC TTTCTCATGC ATTTATTATC TTTTCTGTTG 001840
001841 TCAACCTTCT ACAAATTCTG GTTCCTTAGC TAATTCTTCT GTAGCTTTCA ATTATTTCCT TCACAAGCAA ACTTTCTTTC 001920
001921 TTTAAAAAGT ATTCTAtact caggaggctg aagcaggaga atcgcttgaa cctgcgaggc ggagtttgca gtgagctgag 002000
002001 atcctgctac tgcactctag cttgggcgac agagcgagac tccatctcaa aaaaaaaGTG TCTACAATCA GTGTCTTTTT 002080
002081 TGTTTTCTGA AATTGACTTG TCAGCCCTCT GCAGTCTAGT CTCTGTGTCT ATCGTGCTGT GCTACCAAAA ATGCTCTCTT 002160
002161 TAAAGTAATC TCATTGTTTG GAAGAAAATG AGTTTTTTGT TCTTTAATAT AATAGTGAAA TGATGATCCT GTTTCACTAG 002240
002241 TAGGATAAGG TTCAAAACTA TTAAAATGGA CAAGGCATGT AAAGTCACTT TCTTTTATTT TTATCTTTTT TTCCCCCCGT 002320
002321 TAGAACCTCt ggcagggact gactagccca tgaaacttat ttcttcttcc cgggcacaca gctaaactaa atttcacagc 002400
002401 tttccttgta gttggttata gtcatgtgat gaacttcttt ttttgagaca gagtttagct cttgttgctc aggctggaat 002480
002481 gcaatggcac aatctcagct caccgcaacc tccgcctccc gtgttcaagc gattctcctg cctcagcctc ccaagtagct 002560
002561 gggattacag gcatgtgcca tcacacccgg ctaattttgt atttttagta gagacacggt ttctccatgt tggtcaggct 002640
002641 ggtctcgaac tcccgacctc aggtgattcc cccacctcgg ctttcaaagt gctgggatta cgggcgtgag ccaccgagcc 002720
002721 tggccgtgat taacttctag ccaattaaat atgaatggaa atgatgtgct catttttagg gttaatgaag tcctcctatt 002800
002801 ctcccttact ctttcttcgt caacttgatg cctttgagca tggtgacctt caaaactatg tattggagat gccaaagcca 002880
002881 gaaaagagaa gaatgagtgg ctgaaacagt acttggaaga cagccacccc aattagaaac acccCTTTTT GCACTTACTG 002960
002961 TAAGAGAAAA AATTGAGATT TGAGAATTTA TATGTATAGG AGCTAGAATG ACCATAGCTA GTCCAgaaat tggtacaaga 003040
003041 agtggagtac tgctaaaaca ataacctaaa atatgttaca tcagcttatt tatgatgcag caggtggtag agaatgtgat 003120
003121 ttggaggcta gaaaaaggag gcccatgttt gcagtggcaa agtaattagt aaaactgtca cctgaaataa ttcaaaatca 003200
003201 gatcacctat ctgtttagat tagctccaga ggaaatgatt gaaaagagca aaagtaatac tgtgttgaat tttacatttt 003280
003281 acttttagta aggttttact aaagagagaa actcaggaaa tacttcacag aagtgagagt gtacaggaat atttctcagg 003360
003361 aagggttgga aaagttgact tttataagac ttctaataaa aaaaaaaaaa aaactagaag aggtcttgag tatagttacc 003440
003441 cttgagatta agtcctgcaa caaagatcag gaaaagggtt tggtctttcc attcaaagtc attattttag atggcttcaa 003520
003521 gatagctacg ataaaggtct aaaggaactg gcataggagc aaggcagcaa agcagtaaat taggcttgat aattatgtaa 003600
003601 gaaagaactt tgggtgtagt taccagaagc aaatcaatca gaagactaca tttttagagg aattttatta atcatactaa 003680
003681 atctggctca aatatcattg ttcgggtgtt aaaacagagg gtaactgtcc aaccccaagc ttgcataagt agaaaaatag 003760
003761 agcataaaac cttaacagct ccccagtacc cacacaggat gtggccatgg agaatgatgg acaaaaaaag aacatttcag 003840
003841 aagctcgtat aaggagctgt actaaagact ggacagggag tttctcctga agactagaat tggagtttca tcagaacttt 003920
003921 cttcagtttc aaggagatgg gccgcaaaat gtttatgcag tatttcatca ttattataca tgaatagtat tgctcagtat 004000
004001 cacatttttt ttctgaatga gagaatgtat tatagttatc tgtccctgag ttaccactat atattgggtt tgcagggatg 004080
004081 ggggtgacaa taaagataat ttgtcttttt agttcttagg tcacatctgt acctaatgaa gagaactgca cattttctga 004160
004161 aaatcctaga ctttgagcct gttccagtaa ctggttaaaa ctttagattg tctcctttgg gacagggtat gttctgtgtg 004240
004241 tggaaagaca ggtaaaatac atgtttagtg atcagaatag tagaTTCTTG CAAATGCTAA Attcttctgg ccacacagct 004320
004321 atatttccat gcctctcttg caattaggta tatgggttag gtgtgctgat taggttctaa ccagtggaat gtgagaagtg 004400
004401 atgcactcct attccagctc tggcctatgg aaacatcaca tgagcaatcc aatatatccc actccccatc aacttgaggc 004480
004481 agatgagcaa atttgcactg gaaactatgt gttaaagatg gcaaagccgc aagataggac tcctggtttc ctgaatCTTC 004560
004561 ACTTGGAGGA TACTTGCTTC CCAATTAGAG ACACTTGTGC TAGAGTTTCC TGACTCTTCA CTGGGAGGAT ACTTGCTTGC 004640
004641 CAATTAGGGA CACTTGTGCT ACAGCTCATA CGCATTCTTT TGTGTTAGGC CACTGAGATT TCAGAGCGTG CCCTAATAAA 004720
004721 GACCTGTCCC TCTTTCTCCA GATGCAATCG TTCATTACCT AATTCTAATT TTTATACCAc aggagtaggc ccacaaatca 004800
004801 ggctagccaa agtatcctat cattcagcca tagtgattag ttcaggaatg ggcagattaa caaaactgaa gttaatcaga 004880
004881 gatagtctta tcatttgggc tagcactatc aagaaaaaga cacctgcttc tggaataagc aaaaaaaaaa aaaaaaaaaa 004960
004961 acacaagcta catctggcct ttggtcatca tgtcgagtga acctgcctaa gaatgaaatc ttacagggaa acagagGCAG 005040
005041 TCTCAATGAT ACTGCAGAAG GGGAAGATAT CCCATGAATT GAGAAATATT TCCTGGGTTT CTACTCGATT GAAATTCCAA 005120
005121 GAGGTAAGGG ATAGATACTG CCAGGAAGAC TTGGGAATTC AAAAGAGGAG CTCTCTGAGA CTAGAGTCAC ATCCTGACAC 005200
005201 GGCTCTTCTC CAATGTGCTG GAGTCCTCAG CATCTGCTGG TCTTGATTCA CTGATGGGGG CAACCAGTGT CCCCTTAAGT 005280
005281 GTCCGGGCAG AAACATACTG TACCTTGGTT TTAGAAAGTA GGTTGGCAGG CATCTTTCCT CATTCCCATC AAGGAGTTGG 005360
005361 TACCTTCCAC AGTGTAAGTT ATTTTCTCTG TTCTAGAGCT ACTACAAAGT GCTAGGGAAG GAAAATCTCC TAAAGCAGTC 005440
005441 TGTCATCATG AAGGCCAAAT TATGTAGCAG AAGAGCTTGG AAAAAGATTA AGACGGTGGT GGGGAGGACC TTTGTCCTGG 005520
005521 TGGCTTGAAG CCATAGGGAA AGAGGTTCAC TAAATGCCAA CAAATGCTAA AAAATAAAAA AATAGACAAA ACAGCGAGCC 005600
005601 AGTGGCTTGT GCTCTGCTTT CCACCTGAAA GTTTGCCCAA CATAAGCAAT TATAATCAAG TAGAAATTGA AGCATATGTT 005680
005681 TAAGCAGAGA GGACCAGGTA ACATTGATAA CCACTGTcct cccagccact gccttaatta ggctttcatg agttttcacc 005760
005761 cacattattg caatagtcaa tctccctgcc tctgatccta ttatactcta ctttatcctc cacattgaca cctgagtTAC 005840
005841 TTCTCTACCT TGTAAAAACA Atttatttct gagtacaaaa acactacatg ttcattgtaa aatactaaga aaatacaaaa 005920
005921 aagcacacat accagaacat gcaattctat catctagaga tatccactgt tgacatttta gtACAAACCT TTACACAGTT 006000
006001 GTTTTCTCTG TGTATTTTTA AATGAGAATG CCACTGTTGT ATTTAGCATG Ct
[back to top]

Predicted Small Protein

Name NONHSAT096836_smProtein_5012:5245
Length 78
Molecular weight 8955.2287
Aromaticity 0.0649350649351
Instability index 45.1402597403
Isoelectric point 8.95697021484
Runs 14
Runs residual 0.0457368718238
Runs probability 0.0479660332602
Amino acid sequence MKSYRETEAVSMILQKGKISHELRNISWVSTRLKFQEVRDRYCQEDLGIQKRSSLRLESH
PDTALLQCAGVLSICWS
Secondary structure LLLLLHHHHHHHHHHLLLLLEELLLLEEEHHHHHHHHHHHHHHHHHLLLLLLLLLLEELL
LHHHHHHHLLLEEEEEL
PRMN -
PiMo -