NONHSAT096463

From LncRNAWiki
Jump to: navigation, search

Please input one-sentence summary here.

Annotated Information

Transcriptomic Nomeclature

Please input transcriptomic nomeclature information here.

Function

Please input function information here.

Regulation

Please input regulation information here.

Expression

Please input expression information here.

Allelic Information and Variation

Please input allelic information and variation information here.

Evolution

Please input evolution information here.

You can also add sub-section(s) at will.

Labs working on this lncRNA

Please input related labs here.

References

Please input cited references here.

Basic Information

Transcript ID

NONHSAT096463

Source

NONCODE4.0

Same with

,

Classification

sense

Length

1786 nt

Genomic location

chr4+:56289281..56291798

Exon number

2

Exons

56289281..56290810,56291543..56291798

Genome context

Sequence
000001 tttaagagac gggatctcgc tgtactgctc aggctagcct tgaactcctg gcctcaagtg atccttctgc cttagcctcc 000080
000081 tgagtggctg gCTCCACTCT Gcttggctct gatatttttc cataaagcct atcattcatt tatcatggag gtatgttaat 000160
000161 tttgccttct taatttctct caaattcacc tgctctttgc ctacagtcat ctgccccgat ctggggcaac gcagtttctt 000240
000241 cccagggctg ttgccatagc atcgcagtgg atcacccttc cttcagtctt gttcccctct ggttctttct ctccactaga 000320
000321 ctttaaaaaa tttttgagat agggtcttgc tctgttgccc aggatggaga acaatcatag ctcactgcag ccacgacctc 000400
000401 ctgggctcaa atgatcctcc cacctcagcc tcccgagtag ctgggaccac ttgtgcttgc taggatgcct ggctaatttt 000480
000481 taattttttt gtagagacaa ggtctcactg tgttgcctag gctagtctca aactgccagg ctcaagcaat cctcttgctt 000560
000561 cagcctccca aagtgttggg attacaggca tgagccactg cacctggcct agcggatttc tgaagcatta atctgttctg 000640
000641 ttactttcca gctaaaaacc aacaagtgtc tGAGGACACA GTTTAAACTC CAAGATGATA GGGTCCTCCC TCACCTGGAC 000720
000721 TCCCACCTAC CCTCATGACC TCCTTTTGTG AAATGCTGAA GGGCTCTGCA GCTGGTTGTC TGGTACTGCT GGCCTTTGCT 000800
000801 TTCTATTTAG CATGTTCCTT CTCCCACAAA ACAAAATCAC ATTCTCACTA TGCCCTGTTC ATTCTTCAGG ACTATCTTCT 000880
000881 GGGAAACTTT TACTACATAC CCCTCTCCCC CTAATCTGAG TGTCTGCTTT GCTCAGGTAA CATGTGTTCA CTGGATAAAT 000960
000961 CCTTGATTCC TGGCACTGAG GCAGGGTTTC TGTTCCCAGG AAGCAGAGGC ATACTATTCT GTGAAGGATT GACTGAGTTT 001040
001041 CTCCTAATAC CAAGCAGTAT CTGAGGGAAC AGATGTCTAG CTTAAAATCC TCCCTAGCAC TTGTCATAGC AGTGCTACGT 001120
001121 ATTGCCTGTG AAGGAAGTTT AATAACTGCT GAAAGGTTCG ATTAGCTTTA TTTCATCAGG ATTTGTTTGA CTTTACAAAT 001200
001201 TGATTTGGGT TATTTCAACT TTTAGGTCTA GTCTTAAGTA TAACTGGTAC ATATTCCTTC AAGCAGCCAT TACACCTCTC 001280
001281 ATAAATTTAT TATACACCTG CATTTTTATA ACTATTATGC TTTTTAATTG TTGGCCACCA TTTTTAGTGC TTCTGAATTG 001360
001361 TTATGGTTCT CAAGCAGCAG TTGTCACCTT GGTTTTGAAT TAATGCTGTG ACGCTTGCTT CCAGGACCCC TATGGTGTAG 001440
001441 CCGTGGGTGG AACTGTGGGG CACTGCCTGT GCACGGGATT GGCAGTAATT GGAGGAAGAA TGATAGCACA GAAAATCTCT 001520
001521 GTCAGAACTG TGACAATCAT AGGAGGCATC GTTTTTTTGG CGTTTGCATT TTCTGCACTA TTTATAAGCC CTGATTCTGG 001600
001601 TTTTTAACAA GCTGTTTGTT CATCTATATT TAGTTTAAAA TAGGTAGTAT TATCTTTCTG TACATAGTGT ACATTACAAC 001680
001681 TAAAAGTGAT GGAAAAATAC TGTATTTTGT AGCACTGATT TTGTGAGTTT GACCCATTAT TATGTCTGAG ATATAATCAT 001760
001761 TGATTCTATT TGTAACAAGG AGTTTT
[back to top]

Predicted Small Protein

Name NONHSAT096463_smProtein_734:913
Length 60
Molecular weight 6631.7356
Aromaticity 0.186440677966
Instability index 60.8206779661
Isoelectric point 7.74700927734
Runs 7
Runs residual 0.0258124708443
Runs probability 0.0247937012643
Amino acid sequence MTSFCEMLKGSAAGCLVLLAFAFYLACSFSHKTKSHSHYALFILQDYLLGNFYYIPLSP
Secondary structure LLHHHHHHHHHHHHHHHHHHHHHHHHHHLLLLLLLLHHHHHHHHHHHHHLLEEEELLLL
PRMN LLLLLLLLLLLLHHHHHHHHHHHHHHHHHHLLLLLLLHHHHHHHHHHHHHHHHHHLLLL
PiMo ooooooooooooTTTTTTTTTTTTTTTTTTiiiiiiiTTTTTTTTTTTTTTTTTToooo