NONHSAT096275
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT096275 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
antisense |
Length |
1686 nt |
Genomic location |
chr4+:47916244..47992754 |
Exon number |
3 |
Exons |
47916244..47916721,47961041..47961156,47991683..47992754 |
Genome context |
|
Sequence |
000001 AAAAGAGTGG AAGGAGGTGA GCGCAGCGAG GACCGAGGCG AAGGAGGGTC AGTGCGGAAA CCCGGTGTGA GGGGCCGAGT 000080
000081 GAGGAAGGTT CCTGCAGGGC GGGGACCGGG TTTTAGGAGG TCGCGGCCCT GCCTTTACCG GAGGGCGAGT CCCCGCCAAG 000160 000161 CCCGGGCTTT GGAGATGGAC CGAAGAGGGG AGGGAGGACT AGGTACAGAA ATAAACCGCG GAGCAAGAAG CACACAGTGC 000240 000241 CGAAGACAGA AAGCCGGAGG AGAAGTCGAA ACCGCCTCCT CAGCCTCTGC GGGAGCGTGG TAGGGGAAGA GTCACAGACT 000320 000321 GACCCTGCGT CTCCCGCCGG GAACCAACTG CAGTGGTACA CCCCACGGAA AGCTACGTCT CCTTACCGAC TGCGCACGCC 000400 000401 CCCAACAGAC TACAACTCCC AGAAGCCCCC GCCCGCGTTC CGGCGACTGC GTGGCAGCAC GGGCCGCTTC CTTATCCGAG 000480 000481 AAATTAACAA CATAAAGAAG AAAATGTTTG CGAAGAAGAT TTTATGTGAT CAATCAACAA AGACATGAAG CATGGAGATT 000560 000561 TTGAGAAAAG TCAGGAAACT ATAGAGAAAG ACAGGTTATT GGGGAAGCTG GTGGTGTTTG GTTACATGAG TAAGTTCTTT 000640 000641 TGTGGTGATT TGTGAGATTT CATTGCACCC ATTGCCCAAG CAGTATACAC TGAACCCTAT TTGTAGTCTT TGCTCCCTCA 000720 000721 CCCCCTTCCC ACCCTTTCCC CCTGATTCCC CAAGTCCATT GTGTCATTCT TATTGCGGGA AGTCAAGAAC CCCGAACGGA 000800 000801 GGGACCAGCT GAAGCTGCAG CAGAAGAACA TAAATTGTGA AGATTTCATG GACATTTATT AGTTCCCAGA ATTAATACTT 000880 000881 TTATAATTTC TTATGCCTGT CTTACTTTAA TCTCTTAATC CCATCATCTT CATAAGCTGA GGATGTGTGT TGCCTCAGGA 000960 000961 CCCTGTGATG ATTGCATTAA CGGTACAAAT TGTGTGTAAA ACATATGTGT TTGAACAATA TGAAACTGAT TGTAAAACAT 001040 001041 GGGTGTTTGA ACAATATGAA ATCAGTGCAC CCTGAAAAAG AACAGAATAA CAGTGATTTT CAGGGAACGA GGGAGGATAA 001120 001121 AGGTCTGACT GCCTGTGGGG TCAGGCAGAA TACAGCCATA TTTTTCTTTC TGCAGAAAGC GAGTAGGAGA AATATCGCTG 001200 001201 AATTCTTTTC TCAGCAAGGA ATAAACCTGG GGAAGGAATG CATTCTTGGG GGGAGGTCTA TAGATGGCCA CTCTGGGAGT 001280 001281 GTCTGTCTTA TGCGGTTGAG ATAAGGGCTG AAATACGCCC TGGTCTCCTG CAGTACCCTC AGGCTTACTG GGATTGGAAA 001360 001361 ATTCCAGCCT GGTAAATTCT AGTCAGACCA GTTCTCTGCT TTCGAACCCT GTTTCCTGTT AAGATGTTTA TCAAGACAAT 001440 001441 GCATGCACAG TGGGACATAG ACCTCCATCA GTATTTCTAA TTTTGCCTTG CCTTGTGATC TTTATTGCCC GTTGAAGCAT 001520 001521 GTAATCCTTG TGACCTACTC CCTGTTTGTA CACCCCCTCC CTTTCTAAAA TCCCTAATAA AAACTTGCTG ATTTTGCGGC 001600 001601 TCGGCGTCAC CATCACGGTC CTACCAATAT GTGATGGCAC TCCCGGAGGC CCAGCTGTAA AATTTCAAAA AAAAAAAAAA 001680 001681 AAAAAA |
Predicted Small Protein
Name | NONHSAT096275_smProtein_1004:1303 |
Length | 100 |
Molecular weight | 11088.6919 |
Aromaticity | 0.0606060606061 |
Instability index | 52.3666666667 |
Isoelectric point | 9.40118408203 |
Runs | 13 |
Runs residual | 0.00237670825906 |
Runs probability | 0.0499775793894 |
Amino acid sequence | MCLNNMKLIVKHGCLNNMKSVHPEKEQNNSDFQGTREDKGLTACGVRQNTAIFFFLQKAS RRNIAEFFSQQGINLGKECILGGRSIDGHSGSVCLMRLR |
Secondary structure | LLLLLLEEEEELLLLLLLLLLLLLLLLLLLLLLLLLLLLLLEEEEELLLHHHHHHHHHHH HHHHHHHHHHHLLLLLLEEEELLEEELLLLLEEEEEEEL |
PRMN | - |
PiMo | - |