NONHSAT095799

From LncRNAWiki
Jump to: navigation, search

Please input one-sentence summary here.

Annotated Information

Transcriptomic Nomeclature

Please input transcriptomic nomeclature information here.

Function

Please input function information here.

Regulation

Please input regulation information here.

Expression

Please input expression information here.

Allelic Information and Variation

Please input allelic information and variation information here.

Evolution

Please input evolution information here.

You can also add sub-section(s) at will.

Labs working on this lncRNA

Please input related labs here.

References

Please input cited references here.

Basic Information

Transcript ID

NONHSAT095799

Source

NONCODE4.0

Same with

,

Classification

intergenic

Length

8544 nt

Genomic location

chr4-:24427776..24526490

Exon number

14

Exons

24427776..24428100,24432386..24432744,24433936..24434115,24441116..24441587,24458740..24459285,24470663..24470977,24473998..24474240,24474629..24474680,24509476..24509998,24516847..24517319,24519408..24519908,24520206..24522884,24523100..24524212,24525720..24526490

Genome context

Sequence
000001 TTCTGTTACT ACAATTTCAG ATTACATTAA CCTTTCAAGC AACCACAGCA TACTTTTGTT TCATATTAAT CTTAGTATAA 000080
000081 ATTTAAGGCA CGTAATTATT ACTTGAGAAT GTTAATCTCT GTGGCTCAGG GCTGAGAAGG GACCTTCACA GACCTTGGGT 000160
000161 CGTGTTAATC TTCGGAGACT TCACCCCACA TGTTCAAATA TATCCATAGC TCACATGTTC AAATATGTCC ATAGCTCATT 000240
000241 AATGACATTT AAAAAAATTA AAGGCAGGAT AGGAATATCT TAATTTTAAA TGTTTTCTAA CAGTCTCAGA ATTCTTCTAG 000320
000321 TATGAAACCA CATTATTTCA AACGCAGTTT TTATCAATGT TACATTTAAA AATGAAGTTG ACAGATTTTA GTAAATGATT 000400
000401 GCATGTAAAC ATTAATTTGA ATTTTGCAGT TTCTTTAATA TTAGAGAACA TGATGAGGTG GTTTTCTGGT CTTGTGCATT 000480
000481 TTTAGTGGTC CCTAAAAAAT GGGCTATAAG GATTTCTTAG ATGATTAACA GCATTTCAGA GCACGAGTCA TGGTTCAGAG 000560
000561 ACAGTTTTTA AAGTTCTGCT TTATTGAGGT ATAATTAACA TCAACTATAT AGTTTGATAA AGTTTGACAA ATGTATACAG 000640
000641 TTGTGTAATT GTCACCACAA TCAATACGCA ACGTTTTCAT CACCCTAAAA AGTTCCCCAT GTCTCTCTGT AGCTAATACC 000720
000721 CTTCCTCCTA TTCCAAGTGT TTGGCTACTT GGAATCATAC TGTGCGTAGT GGAAAAAAAT GGTGAAGATT AAAAAGCACA 000800
000801 GAACCTTTAA TAAGAGAAGG GGAGGGGCGA AGGAGCAGCC AGAAAGTAAA ATAATTTATT TAGATAGTGG AGTTTCATGC 000880
000881 TTCAGAGAGG TGTGTAGTGG AAGGGAATTG TGAATCCTGA AAGCTATGGG AATTGGTAAT TTAGTCTTTA GCCAGCTTAT 000960
000961 GTAAGTTTAA GGTAGAGGAT ACAAGCAGGT AGTCAAAAGG GCCCAGATGC AGCCTGCCCT GATGTGATCC TCATGAAGTG 001040
001041 TTTCAAAGAA ATAGAGCACC TTTCTGTAAA AATAGATCCA CGTAAAGTTT TCAAAATATT CCTGAGTCTG GCAAGGGTGG 001120
001121 GCCTACCTGA AGTTTCTCCT GACACACTGT TAATTAGCTG CTTTGTAGGT AGGCATGTAT TCTTCAGTTT GCCAGAACCC 001200
001201 CTTGCATGCC TTCATTTAGT CTACCTGTAG GCATTGTTGG GTGAGAAAGG GTTTTGAAGT GGGAAAGCTT GCAAAGACTG 001280
001281 CTTTTAACGG AAAGTTTCAT GGGCAGGATT GAGACCAAGA GGAAAGAAAC TTCAAGTTAA TGGACTACCT TGAAATTTTA 001360
001361 GGCAAAACCT GTACCTGTGT CATGGGAGAG ACTGGGATTA TGGCCACACT TGATCTGAAG TTGAGGTCAA ACTTGGTGAT 001440
001441 GTTGCCTTGA AAATAGAGAT TTTCATAGAC CAGGACGAAG ATAGAAGGGA AAGTTACAAG GGACTTCAGC TTAAATTTAG 001520
001521 TCTCTCTTAT CTTGGCACAG AGGGATGTAT CTGTTAATCT GAGGTGGATC AAGTTCAGGC TTGAGAGAGG GAGTAATGCA 001600
001601 TGAGACTTTG AAAGTAGTTT GATTGTGAGT AAGCAAGAGA TGGTGAAAGA GATGCCTTAG ATCATGGGCA TACTTAGATC 001680
001681 TTACAATTTT GATGATGAAT TCACGCTAGC CTGAGAACTG AAGTGGAAGG CTACCCCTGG TTGATGATGG GTAGCAGGGA 001760
001761 TGTAGAAAAG TGCTAAAGTC TTTAAGATCT TGCCCTTTAA AAGAATCATC AGGTGGGGCA GATGATTAAA GATCATTACT 001840
001841 TAGGGTTTAA TGCGTTCAGT GTGTTTAGAT TTGCGTGGCA GTTATTAAAA TAAGGCATGC TATCAGTTTG AGGGACTGAG 001920
001921 TTACTTAAAA CCATGAATAG ATAGAAATTC ATTCTAATGA TTACACAGGT GTGTGTTTTT TATTTTAGAT TATATTAAAA 002000
002001 AGTACAGTTG CTAAGATGCT GGGAAATATT TCAACTGTGG CACTAGCACT GTTAGCTTTA GCAGAGAAGC TAGTTTTTTT 002080
002081 TTTTTTTTTT TTTTTTTAAT AGGAGACAGG GTCTCACTCT GTCTCTCAGG CTAGAGTGCA GTGGTGCCAT CTCGGCTCAC 002160
002161 TGCAGCCTCT GCCTCACAGG TTCAAGCGAG TCTCATGCCT CAGCCTACCG AGTAATTGGG ATTACAGGCA CCCGCCACCA 002240
002241 CGCCCAGCTA ATTTTTGTAT TTTTAGTAGA GATGGGGTTT CACCATGTTG GTCAGGTTGG TCTTGAACTC CTAACCTCAA 002320
002321 GTGGTCTGCC CTCCTCAGCC ACCTTAAGTG TTGGGATTAC AGGCGTGAGC CACCATGCCC AGCTGGTATT GAGTTCTTAA 002400
002401 GAAGGGAAAT ACATTGATTT TTAAGGAAGA TAGATAAAAC TTGTGCAGTA GATTATAAAA GAAATGATTA GAATTTCATC 002480
002481 TCTGACTGAT TTGTGATAAC GAGTATGTTA TTATTTTAGA TTATTTGCTT TTTAGTGTAC TGTCTCAGTT CTGCTTACAC 002560
002561 AAAAACATGC TGAAGACTTT TTTGTAAGAT ATTTACTTAA AAAATTTTAA AGTTTTATAT TTGGGTGTTT TGTTGAATCA 002640
002641 CTGTTTCCCA AGATTATATT AATGAAATAC AGCTTACAAC TCATTTTCTT TTTTCTTATT ATTTCCCTTT TTACACTTAA 002720
002721 GGAGGGCTGA ATGGATAACT TTTAAGGTAT TGTCTTAAGT GTTAAATGTC TGAGTATGCT TTCCTTGCCT CTCCAGAAAT 002800
002801 ATTTTAATAA CCTTAGAGAA ACATGTAGGA TTTTCTACAA AAAGTGTCGG CTGCTTTAGC GGTTTCTCCC TGAAGTGATG 002880
002881 TGTAACTGAT CAGGATCTAC TCATGTCGTC TTTGGTAAAG TTATGTCGCT TGTCAGGGTG AGGAGAGTTT TTGAGATGCA 002960
002961 AATTTTCCCG TTTTTGTTTT ATTACCATGG AGAAATGTAA TAGTTGGTGT CTTTTGGTAT AGCTAACTTT TAAACAGTAC 003040
003041 AGGTGGCTCT TGGACAGTCA CTGTTTTAAA CAAGCAGCAG TAAGGCAGAC TGAAGACAGT AGGAAAAATG ATCAACATGG 003120
003121 TGGAAGGAAA GAAAGCAGTC AGTAACAACT TATATAATAA TTTGCAGGAA CTCTTAGAAC TGAACCTTAC AGTTAAGTTG 003200
003201 TGATATCTGG GGTAGATTGT ATTATTTCCT TATTTCAGAA GAACTGAGGC CCCAGGTCAC ATGGCTGTTT ATCTGCAGAG 003280
003281 CTGGCATTCC ACTCTGCTTA GCTAAGTGCT CCCTCAACCT TGATGCTATT TTTCCTGAGC TGGGTGCCAG GGGAGCTTGG 003360
003361 ATATGTAAAG CTTGGTTGAT GTCCTTGATA GGTGCATGGT TCTAAGATTG TGATTTTCAT CCTAAGTTTA GGAAGTTACA 003440
003441 CACCTGCGTG GACAAGGTGG GTCTAATTAT TTTTCATTCT GGTTTAATGT TGACAAGAAA ACAGACATGG AAGAGGACTT 003520
003521 TCCTGCACTC CTGGTCTTCC TTTTCCTTAA GTAGTGCTAC AAGGGTCTGA CCGGAAGATC TTTTTACTGG TGGCTTGCTG 003600
003601 CTTAATATAA TACAGGTTTT GAGTACAATC ATTTCTTCGT ATTGTTTTTA AAGAGCAATG ATATGACTAG TCTGAAGTGA 003680
003681 ACATAGTCTA GTCACTTGCT TGGTTTGGGG ATTAGAAGTA TTTGCAAGGT GAACCACCCA TTCTCTTCTG CTTATTTACA 003760
003761 CTACACTGCT TTTATCCATA ACTTGGAGCC ATCATTAAGA TAGACTGTTT TTTCTATCTC TGTCCTTGGA ACCTGTTCAG 003840
003841 GTATTTAAAG CTGTTTTCCT CTGCTAGGCT TTGAGTTTCT TAAGGGTTGG AGCCATATCA TTATGTCCCT TGCACCTGGT 003920
003921 TGTGGTATAC AATATCATTC TTTCAGCAAA TACTTTTATT TATTTATTTA TTTGAGGCAG AATCTCGCTC TGTTGCTCAG 004000
004001 GCTGGAGTGC AGTGGCACGA TCTGGCTCAC TGCAACCTCT GCCTCCCAGG TACAAGTGTT TCTCCTGTCT CAGCCTCCCG 004080
004081 AGTAGCTGGG ATTACAGGCG CCCACCATCA CATCCGGCTA ATTTTTGTAT TTTTAGTGGA GATGGGGTTT CGCCATGTTG 004160
004161 GCCAGGCTTG TCTTGAACTC CTGACCTCAA GTGATCCACC CACCTCGGCC TCCCAAAGTG CTGGGATTAC AGGCGTGAGC 004240
004241 CACCGCGCCC GGCCAAGCTT CTTTCTTTAT ATGGACTTTG AAACATTTAC TGTGACTCTT GGGATTTCTA GTTGAAGTCA 004320
004321 CCTGCAAAGG GATTCCCCCT GTAAATGTCC ATATTGCATA TTGCTGTGAA TATGACTGGA GGTTGTAACT TACCTGAATG 004400
004401 TTTCCCTTTC CTGATTACAT GCCAGGTAAT ACTGAAAGGG AAATGTCCAG AAAGGTTGTA TTGGATGCTT TCAGAAGAAT 004480
004481 CACAACCTTT TCATGAATAA ACCTCCTTTA TTTATGAATG GACATTGTGC GGTCTGTGAC AATGTTTATA AGTGCTTTTA 004560
004561 GAAATCATTT TCATTGTAAA AAGTATATTA GATGTCTTTT GCCAAATTTT ATCTAGTTAG TAATTATAAA CAGTATCAGT 004640
004641 CTTATTTTCC TATTGTTTAT GAACAATATA AAGACCTCTT AATAGTGATC TAAAAGTTTT CTATTGTCAC TGGGTTACCT 004720
004721 TCAGAATTTC TAGGCCTGTT AGATTTATTT TTGTCGTTAG CATTTAAAGT TTTGCTCTGT ATTAGAAAAT AGAAAACTTA 004800
004801 GAAAAACAGG TAGTGGCAGT TCATCACTTC CCCCACTTTT ATTTCCAAGT CATTATCTAG TTTCTCAATG TGGCATTGCA 004880
004881 ACTCTGATTT TTTACTGTTC GTGCACTAAA GCATTTGAGA TAAGCCCTTA GTGTTGAGGA AATCCTAAAT CCTACTGCTG 004960
004961 GGGGGTTAAA AGAAATATAG TGACAGGCTA TGAAATAGTG TTGTCATAAC TTATCAGTGG CTAGTAAATA GGGTAGTTGC 005040
005041 CTTCTGACAC CATTTTGCGG TGGCTCACGC CTGTAATCCC AGCACTTTGG GAGGCCGAGG CAGGCGGATC ACGAGGTCAG 005120
005121 GAGATCGAGA CCATCCTGGC AAACACGGTG AAACCCCGTC TCTACTAAAA ATACAAAAAA AAAAAAAAAT TAGCCGGGCG 005200
005201 CGGTGGCCGG CGCCTGTAGT CTCAGCTACT CGCGAGGCTG AGGCAGGAGA ATGGCGTGAA CCCGGGAGGC GGAGCTTGCA 005280
005281 GTGAGCCGAG ATCGTGCCAC TGCACTCCAG CCTGGGCGAC AGAGCGAGAC TCCGTCTCAA AAAAAAAAAA AAAAAAAAAA 005360
005361 AAAAAGTATT TATTCCCTAA GCATATTCAT TATATGCATT TCTAGGTATT TTGTTGCAGG GACGCTTTCA GATTATCTGT 005440
005441 CTTCAGAATT GCTAGATACA GAAGTTGACC ACTCCCTTTT AATCTTTAAA TCAAGGACAG GATTGAGGTC AATATCGCTG 005520
005521 TGTGCTGTCT TTGTCAACAA GAAATCGGCA TTTATTTTGC ACTGCAAATG AGAAAAACAA AAGTGCCTGG TCCTAGGCCA 005600
005601 ACAGCTTTTT TAAAACCATA ATTGTAGGGA TTTGAGCTAC TGTGCTGGGC CGAGGGCAAA GGTGAACCCG ATGGCTCTGA 005680
005681 GCGAATGGCT CACCTGGGCT TCCCAGGAGG AGCAGAGTCA TTTGGGGGCA GCACTGAAAC CTAATTCACC AACTGAGGTC 005760
005761 AGCAGAGCTG GGAATGAGTT GGGCGATTCT CTGGATTCAC TCCTTGCCTT TGGAGCATGA CTGTTGAAAC ATTCCTGGGC 005840
005841 TCCAGGGTTA AAAAAAAAAA AAGTCCCCAC TCCTGGGTGT TCCCTCTCCA TTCCCCTGCC TGGCCCCAAA CTCCCCAGGC 005920
005921 TGAGACTTGA TGGGTTTTGG GGATACTGCT GTGGATGGAG AAATCCTTGC TCTCTTGGCT CCATGCAGAG GCCTTCCGGC 006000
006001 AATTGGTGAC AGTTGCACCC ACTGTGTGGC TAACACTTCA GCCTGGCTGC CTGTCCCCGG CAGCCGGCGG AGTCAGCGCG 006080
006081 CCCACGTGAC GGCCCCGGCT CTCCGTTCCG TTCCCTTTGC CATTCCCTTC CCCCTCCTTT TCTTTTATTT TCGAGAGAAT 006160
006161 TTCTTCTTGG CTTATTGGTT TAATTTGATT TTTAAAATTT TGGGTTGCTT TTGTGTATGT GTGCTTTTTT TTTCTTTCCT 006240
006241 CATTTTATTT GCATCCAGAG CATGGCGGGC TGCGGGCTGT CGGAAGACAC CCTCTTCTCT TCCTTCTTTT ACAACTACGG 006320
006321 CTCCTCCTGG GAAACCCCTT CCAACCAGAG AGATGAAGAA TACATGTGCA TAACGGGCCT TACTGATCTC CAGTTTGCAT 006400
006401 TTTCAGCATT TGAGCATGGG CACATGTTTG AGAAACCTGC TCCTAACTGT TCCTAAGAAG AAAAAGAATA CAACAAAGGC 006480
006481 GATACTTTAA ATCTCATCTT GGACTCGGGC AGAGCTGCTA TAGGAAGGCC TGGGCCAAAT TTGCAAGAGT GAGACTTGTT 006560
006561 CATGATTTTA CCCTGATTGC TGCCAAAATG CTTACATATC CTGCGTTTCC TAAAAATGGC AATGTTCTTC AGATATAATT 006640
006641 TGTTTACTCT ACCTCAATTA AAATGAGGCA GGAGAATGGC GTGAACCTGG GAGCGGAGGT TGCAGTGACC CGAGTTTGCG 006720
006721 CCACTGCACT CTAGCCTGGG GGACAGAGCA AGACTCCATC TTAAAACAAA CAAACAAACA AACAAACAAA CAAACAAAAA 006800
006801 ACAGTATCTT TTGTTATTCC TGAGATAATT CCAAGAGAAG AGGAATGTTG ACTATATCCT ATGGCATCAT TATTGTTTGT 006880
006881 CTGATTGGAC CCAGGCTAGA AATCTTAAAG ATATTTGTGA AAAATAAAGC TCATATTCAA GATGAAACAT TAAACCCCAC 006960
006961 AGTGAAGGTC ATTCTCATTC TCTCTGGCTT GCCCCTCTTT CTTTCTCACT TGACTTTCTC ATAATTTTTT TCAACAACGT 007040
007041 CTTTGGACCC CGGTTCATTA AACTCTCCCT CCCCACATCT GATTTTTCCC CAAGAAAGTG CATTCTGGAG AGGGCAGGGG 007120
007121 GAGTGACTAT TCATTTGTCT ACACTTCCCA GGCTCAAAGG AGCTGTGGTC ACTATTGCTT CCAAAACATT CCTTTGCCAT 007200
007201 AATCCTGCAT TAGAGCAAAG CACTGAATTG GCTTCTCTTT TGGAAGAATT CCTTTTGGAG AAAAAGTCTC CTTCTTGGAC 007280
007281 CTTAAGGGAT TTGGCTCTGA GGGTTGAGTC ATGTTCCCAT GAATGCACAG TAAAATCATG GTAAATCCAA GCCTAGAACC 007360
007361 CCAGAGCCTA TTTGTATAAC CATCAACTGG TCATTTTATC AGGATTTATC TTGGATTTTT GATGTGCAAA GATCAGAGTG 007440
007441 GTTATAACAG AAGTCTCTAC AGAGCTACCG CAGAATCCCT ATGCCTACTG TTGAGACGCT TTCTAATGCT GTCTTGGAAT 007520
007521 TCTTCCCGTT TCTTCTGGAA ATCTTTTTTT CACGTGAAAG CAGTTGCTGG TAGTACCCAG ATGGTGGCCA TATAGTCCCT 007600
007601 AGGTATGACA GTCTGCCCAA TACCAGTTAA ACATTATAAA TAGTCAGTGG GTACTCCTTG AATGACTTTT AACCTTGAAC 007680
007681 CACCATATGA AGTCAGTCTA TCTGATTTGC GCTAAGTCTT TGGTGCTTCA TGAAATCCCT CTGCTCTCCT CGGTTAGCTA 007760
007761 CCTTCCAATC CCTGATGGCA GCACATCCAA AATGAGCTCT CCCTCACCCT GTGCAGGTTG TGCAGAAAAT CTTCCCTCAT 007840
007841 CTTTCACAGA GAGAGAAAAA AATGGAGTCT TGCTCTGTCT CCCAGGCTGG AGTGCAGCGG TGTGATCTCA GCTTACCACA 007920
007921 ACCTCCACCT CCCGGGTTCA AGTGATTCTC CCACGTCAAC CTCCCGAGTA GCTGGGATTA CCAGGCACCC GCCACCACAC 008000
008001 CTGGCTACTT TTTTGGTATT TTTTTTTAGT AGAGAAAGGG TTTCACCATG TTGGTCAGGC TGGTCTTGAA CTCCTGACCT 008080
008081 CAGGCGATCC GCTGCCTCAG CCTCCCAGAG TGCTGGGATG ACAGGCTTGA GCCCCCGCGC CCGGCCCCTA CTTTCTGTCT 008160
008161 CAGGGTCTGT GCCTTACTTC AGACTCATAC CATGTCTCTT CTGGACTCTT GCCTTGTAGT GAAATTCTCA GTAATTTCAC 008240
008241 TGGGTTTTGT TTTGGGAAGA AGCTGGTATA TCGCTGCTGT TTTTGTTCGT ATGCTGTCAA GGAGATTGAA GTTTATTTGA 008320
008321 AATGTTCCTT TTATTTTTAA ATGGCACTTG GGACTTTTCA TCCTTAGAAG CCCTGTTTTT CTTCCCCTTT AAATTAGGGA 008400
008401 CTAAGGTTAG AGGAGGAGTT GGATTTATTT TCTGACACTT TCTGAATAAT TAGTTATTAT GTCTCAGAAA GAATCACAAT 008480
008481 ATCAATAGTA TATGTTCTGG AATTACGAAG TATTATATTA GAGGGCTTTA CCTCTCTACC TTCT
[back to top]

Predicted Small Protein

Name NONHSAT095799_smProtein_3902:4084
Length 61
Molecular weight 6815.8869
Aromaticity 0.15
Instability index 56.0035
Isoelectric point 7.80523681641
Runs 9
Runs residual 0.000265957446809
Runs probability 0.0474788514004
Amino acid sequence MSLAPGCGIQYHSFSKYFYLFIYLRQNLALLLRLECSGTIWLTATSASQVQVFLLSQPPE
Secondary structure LLLLLLLLEEELLLHHHHHHHHHHHHHHHHHHHHHLLLEEEEEELLLLLEEEEEEELLLL
PRMN -
PiMo -