NONHSAT094812

From LncRNAWiki
Jump to: navigation, search

Please input one-sentence summary here.

Annotated Information

Transcriptomic Nomeclature

Please input transcriptomic nomeclature information here.

Function

Please input function information here.

Regulation

Please input regulation information here.

Expression

Please input expression information here.

Allelic Information and Variation

Please input allelic information and variation information here.

Evolution

Please input evolution information here.

You can also add sub-section(s) at will.

Labs working on this lncRNA

Please input related labs here.

References

Please input cited references here.

Basic Information

Transcript ID

NONHSAT094812

Source

NONCODE4.0

Same with

,

Classification

antisense

Length

1377 nt

Genomic location

chr4-:2837616..2839958

Exon number

2

Exons

2837616..2838740,2839707..2839958

Genome context

Sequence
000001 ggcaaaacta tttcctgatg gtggttgcag atcgttcact tcctaacagt gtgttaggtt gtgcatttat gttttattca 000080
000081 cttttctgta tgttgtttta ttctgcagga aatgaatgaa aaaGGGATTC TGCCTCAGCT CTGAGCCCCT CAGAGTGGGG 000160
000161 CCAGGGAAGA AGCAGACGGC AACGCCAGGG CAGCTGTCTG GCAGCCTGGA AGGCCTGCGA AGCTTCCTAG GGGTCCGAAG 000240
000241 GAGGGTAGAC AGGCACGGGG CTCACCACAA TCCTTCGGAT GGAACCACAG GAAGAGAAGA AGCATGTTTC ACCCTGGGCT 000320
000321 GGGGGTGCTT CCCAAAGCCA CTGGGGCCCT TTTCCCAAGC CCCAGAACTG AGCCCACCTG AACTCATCTT GAAGGtaggt 000400
000401 atgtcagtga gtcctcccaa agcctcagtt tccctatcta taaaatgagg aagcaggact GCCCCTAGGG CAAGGCCTAG 000480
000481 GCCTCCTGCC AGCCCACCCT CACAGACCCA GAGGGCAACG CAGGGTGAGG CGGGGCAGTT TCACTCCCCA GTGCTGTGGC 000560
000561 CCCCTTGGTT GAGTGAAAGC ACCTCCAGAG CCCTAACCCT AGCCCTGGGA GCCAGGCAAG AGACCCCCAC AACGACCATC 000640
000641 AGAGGTCGTG AGGGGTggca gggagcctgg cagggagcca ggcaggggcc aggGTCTagg ctcagagcag tgaaggatag 000720
000721 atagggtcac atgccagtta gtggcagagg tgggacttga acccaggcct ctgtgagact tggttctctc acctgtaaaa 000800
000801 tgggtctact agcagctgct tctccaagca aatgatgtca agcacccagc tcggcacctc acagatgtgg tcagtaaatg 000880
000881 gtaatcccaA CCCTACCCTT ATATGTGGAC TAGAACACTT ATGGCAAGTC TCGGGAGGTC ATGGGAACTC CTCATGGCTC 000960
000961 CTTCTTCATG CTGGAGGACC ACGGCCTGCC CCATCCCACC CCAACACACT CTTGAAACTG AGGCCCTCGG CCTAGAGCAG 001040
001041 CTCACACAGA CGTGGACAGC TGTGCTAGCA GGTGCAGAGT CTGGGAGGCG AGGCTGGACC AGGGCCCCAG CTGGGCTTCG 001120
001121 GGTAACCACA GGCCTCAACT GTCCAGTTGG CCAGAGGGAC CTATCACCTG GCTCTGGGCC CCAGGATGCT TTAGCCACTT 001200
001201 GAGCCGGCTC CAGGTGACCG TGTAAGTGAC ATAAAGCAAA GGTGTCCTGG ACTGCACCAC TCACTAGCTC AGCACCCCAG 001280
001281 GCACCAGGCT GGAAACCACA TCTCGCACCC AATTCTCCAT TTAAAAATTT TACAGGAAGG ggccaggcac agtggctcat 001360
001361 gcctgtaatc ccagcac
[back to top]

Predicted Small Protein

Name NONHSAT094812_smProtein_902:1201
Length 100
Molecular weight 10603.9825
Aromaticity 0.0505050505051
Instability index 57.0858585859
Isoelectric point 7.76519775391
Runs 15
Runs residual 0.017825311943
Runs probability 0.0330860272037
Amino acid sequence MWTRTLMASLGRSWELLMAPSSCWRTTACPIPPQHTLETEALGLEQLTQTWTAVLAGAES
GRRGWTRAPAGLRVTTGLNCPVGQRDLSPGSGPQDALAT
Secondary structure LLHHHHHHHHHLLLLEEELLLLLLLLLLLLLLLLLLHHHHHHLHHHHHHHHHHHHHHHHL
LLLLEEELLLLLEEELLLLLLLLLLLLLLLLLLHHHLLL
PRMN -
PiMo -