NONHSAT094406

From LncRNAWiki
Jump to: navigation, search

Please input one-sentence summary here.

Annotated Information

Transcriptomic Nomeclature

Please input transcriptomic nomeclature information here.

Function

Please input function information here.

Regulation

Please input regulation information here.

Expression

Please input expression information here.

Allelic Information and Variation

Please input allelic information and variation information here.

Evolution

Please input evolution information here.

You can also add sub-section(s) at will.

Labs working on this lncRNA

Please input related labs here.

References

Please input cited references here.

Basic Information

Transcript ID

NONHSAT094406

Source

NONCODE4.0

Same with

,

Classification

intergenic

Length

1723 nt

Genomic location

chr3-:197232135..197233857

Exon number

1

Exons

197232135..197233857

Genome context

Sequence
000001 CCTCACAAGA TCCAGACCCC ACAAGATCCA GACCTCGGCT ATCTGGCttc tctttttttt gcgacagagt ctcaatctgt 000080
000081 cacccaggct ggagcgcagt ggtgtgatct cagctcactg caacctctgc ctcccaggtt caagcaattc tcctgcctca 000160
000161 gcctcccgag tagctgggat cacaggtgtg cgccatgcct ggctaaattt tttttttttt ttttgtattt ttagtagaga 000240
000241 tggggtttcg ctatgttggc caagctggtc tcgaacccct gacctcaggt gatccacctg cctcgacctc tcagagtgct 000320
000321 gggattacag gcgtgagcca ctgcacccag ccCCATCTGA CTTCTATACC CGCAGCCCCT TCCTTTACCC TCAGGCTGCC 000400
000401 TCAGTCTCCA CACTGGGGCC CAGAGCTGGG CTGGACTCAG CGCAGTCAGA ACCTCGCCTT GCACGTGGCG AAGGAGCggc 000480
000481 aggcaggcag gcaggcaggc aggcaagcag gACAGCCAGC TTCCTCCTAG TCCGCAGTTT CGCGGAGCAG CCTGGAAAGG 000560
000561 GAGGCCCAGG CTTCCCTGTC TCGTCGCACG TGTGTCTGCA GTGTCTGTGC TATCTCCCAG GGGCCTGGAT GTCGATGGAA 000640
000641 TGCCTGAGGG TGGAGAGAGC TGTGGCTGAG GCCTACCCTG GCGGCCTCAG CATCTGTGGA GATGTGTAGA GACAGGGAGA 000720
000721 GTGAATGGGG ACCAACCTCA GGAGATGCTG GGTCCCAGAA GCACCATGTG CTTCTCCTTT GGTGAGACTT AATTACTCTC 000800
000801 TAAAATGTAA GGCTACTCCC ACTTATCAAA TTATAGATGA GTTTAATTAC AGCACACTGA GTAACCACAC TGGGCTCCTT 000880
000881 CAGAAATAGC AGCAGGCTGG TTGCTCTTCT CAGCTTCAGC TGTAGCCACC CCAGTTTCAG GAGGAAGTGC CCGTGGTTCC 000960
000961 TGGGGCCTGG AAGTGCCGCT CAACTCTGCT GCCAGACAAG TGCGGGCGTG GTGGACTGCA CTGGGTACAC TGCTGTACCG 001040
001041 GCCACCACCC TCCGGCCACT CTCAGCCGGT GAGTGCTCTG CGGGGCCATC TGGCCACGTG TTCTGTGACT GGGTCATTTA 001120
001121 CTCTGCTGCA ACCTCTCTTT CTCCTACCTA CATCGTGTTC TGGATAAAGG TTTTGGCTCA TAATGTCCGA CCAGAGGTGG 001200
001201 ACAAAGTGGT GTGGGACCTG CCGTAAGAAA CAGGGAGCAT GGTGCGGGGA GAGAAGCCTG TGCCTTATGG AGACTCGGGG 001280
001281 CACCTTCAGG AAGCAGGGTC AACAGCAGCA GGCCGCTAGG GAGTCGGGAG AGCTCGGTGA TGTCACGAGG GGCATCAGAC 001360
001361 TCTTCCCTGC AGGCTGGCGG GACTGATGGG CTCTCGTTCC AATGGAGGTA CAATGGGACT TCCGGGGCTG TGATGGGAAG 001440
001441 GGCGGAGGAG CTGCCGATGG TCCCAGTGCC ATATTAGTGT CACATTCTGA GGGGCAGCCC TGTGCCGGAC GGCAGCTGCT 001520
001521 ACCTCTCCCT CTGCCCCTTT ATTACTTGAA TCTCTTCGTT GTGCCCTGTC TAGGCACGGT CGTCCGACAG CAGGCAGCCC 001600
001601 ACTGCCCTCC CAGAGCTCAC TGTCTAGCCC AGGGTGACAC AGGGTAACCG TGGGCATGAC TTGGGCCGGG AAGTGAGAGG 001680
001681 CTCGATTCCA TCACATGTAA ATAAAAATAC TCATTTTCAA TCT
[back to top]

Predicted Small Protein

Name NONHSAT094406_smProtein_239:529
Length 97
Molecular weight 10069.0823
Aromaticity 0.0520833333333
Instability index 62.553125
Isoelectric point 10.022277832
Runs 9
Runs residual 0.040485395189
Runs probability 0.0428958370135
Amino acid sequence MGFRYVGQAGLEPLTSGDPPASTSQSAGITGVSHCTQPHLTSIPAAPSFTLRLPQSPHWG
PELGWTQRSQNLALHVAKERQAGRQAGRQAGQPASS
Secondary structure LLEEEEELLLLLLLLLLLLLLLLLLLLLEEEEEELLLLLLLLLLLLLLEEELLLLLLLLL
LLLLLLLHHHHHHHHHHHHHHHHHHHHHHLLLLLLL
PRMN -
PiMo -