NONHSAT094238
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT094238 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intergenic |
Length |
1859 nt |
Genomic location |
chr3-:195439814..195442003 |
Exon number |
3 |
Exons |
195439814..195440230,195440438..195440847,195440972..195442003 |
Genome context |
|
Sequence |
000001 gcttatcagg gtattaaatg tgtttctgac ttacagtatt tttgacttac cacgtgttta ttgggacgta accccttcct 000080
000081 aagatgaaga gcatctgTAT ACATCCAGAA Tcctgtggag caactcataa cccatgagga atggaagccg acagacagac 000160 000161 tcatccccag gacaggtggt tctcactaca tctcataaag cttcttagaa gatcttacag gattgagcaa ccagccagcc 000240 000241 acagcagggg ccaactggat aacacgtctt tgcataggct ctccctctgt ccctgtcacc ctcccctttt cctaaccttg 000320 000321 ttccttggga ttatgttttg aaataaatta TTCAGAGAAA TGAAGCCAAA GCTGACCCAT TAGCCAATAG CTAGGTTCTG 000400 000401 TGATGACAGA GCTTCTGGGC TATAATCGTT TACTGAGAAG CCAGCGTTCC TGAGGGGATA ATGGCTCGTT CCATTCAgct 000480 000481 gcagcatagg agtgagggca gggcattagc agaagataac accagaaacg tgctctgggg cctgttgatg actttctgtg 000560 000561 ccaagcacag acatttagcc tttattctgt atgtgatggg aagccagtgc cagtggtggg tttgagcagg gaaCCAGCAA 000640 000641 CCAGTGGTGG GTTTGAGCAG GGAACCAGCA ATACTCAAGC TCTGCTTGGA TGGAGGCCAG TCAGGGAGGA GTTAGGGCAG 000720 000721 GAGGACCAGT CAGGGAGGAG ACTTAGGGCA GGAGGACCAG TCAGGGAGGA GACTTAGGGC AGGAGGACCG GTCAGGGAGG 000800 000801 AGACTTAGGG CAGGAGTACT GGTCAGGGAG GAGACTTAGG GCAGGAGGAC CGGTCAGGGA GGAGACTTag ggcaggagga 000880 000881 ccggtcaggg aggagactta gggcaggagg accggtcagg gaggagttag ggctggagga cgggtcaggg aggagactta 000960 000961 gggcaggagg accggtcagg gaggagttag ggctggagga ccggtcaggg aggagttagg gcaggaggac tggtcaggga 001040 001041 ggagttaggg ctggaggacg ggtcagggag gagttagggc tggaggaccg gtcagggagg agttagggca ggaggacagg 001120 001121 tcagggagga gttaggggag gaggaccggt cagggaggag ttagggcagg gggattggtc agggaggagt tagggcaggg 001200 001201 GGATTGGTCA GGGAGGAGTT agggcaggag gaccggtcag ggaggagtta gggcaggagg accggtcagg gaggagactt 001280 001281 agggcaggag gactggtcag ggaggagtta gggcaggagg accggtcagg gaggagttag ggcaggagga ccggtcaggg 001360 001361 aggagactta gggcagggGG ATTCGTCAGG GAGGAGTTag ggcaggagga ccggtcaggg aggagttagg gcaggaggac 001440 001441 tggtcaggga ggagttaggg caggaggacg ggtcagggag gagttagggg aggaggactg gtcagggagg agttagggct 001520 001521 ggaggaccgg tcagggagga gttagggcag gaggaccggt cagggAGGAG TTAGGGCTGG AGGACCGGTC AGGGAGGAGT 001600 001601 Tagggcagga ggaccggtca gggaggagtt agggcaggag gaccggtcag ggaggagact tagggcagga ggactggtca 001680 001681 gggaggagtt agggctggag gaccggtcag ggaggagtta gggcaggagg actggtcagg gaggagttag ggcaggagga 001760 001761 caggtcaggg AGGAGACTTA GGGCAGGAGG ACCGGTCAGG GAGGAGACTT AGGGCAGGAG GACTGGTCAG GGAGGAGTTa 001840 001841 gggcaggagg accggtcag |
Predicted Small Protein
Name | NONHSAT094238_smProtein_140:340 |
Length | 67 |
Molecular weight | 7827.0236 |
Aromaticity | 0.0909090909091 |
Instability index | 60.0621212121 |
Isoelectric point | 9.49005126953 |
Runs | 7 |
Runs residual | 0.0445472690982 |
Runs probability | 0.0196204607969 |
Amino acid sequence | MEADRQTHPQDRWFSLHLIKLLRRSYRIEQPASHSRGQLDNTSLHRLSLCPCHPPLFLTL FLGIMF |
Secondary structure | LLLLLLLLLLLLHHHHHHHHHHHHHHLEELLLLLLLLLLLLLLLLLLLLLLLLLHHHHHH HHHHLL |
PRMN | - |
PiMo | - |