NONHSAT093872
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT093872 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
antisense |
Length |
3591 nt |
Genomic location |
chr3-:186569675..186579157 |
Exon number |
4 |
Exons |
186569675..186571031,186571567..186571661,186571922..186573905,186579022..186579157 |
Genome context |
|
Sequence |
000001 AGCGGAGTGA TTCTCCTGCC TCAGCCTCCT GAGTAGCTGG GATTACAGGC GCCAGCCACC ATGCCCGGCT AGTTTTTGTG 000080
000081 TTTTTAGTAG AGACGGGATT TCACCATGTT GCCCAGGCTG GTCTCAAACT CCTGATCTCA GGCTCAAGCT ACCTTCTTGA 000160 000161 TGAAAAATTC TGGACGTGTT CTGAAAATCA CAGTCATCCC TAACTTCAGT GGAAAAGATT CATATTGTCC AGCTGAACAA 000240 000241 GGATTGATAC TTAAAACCAG GGATTTCCTA AAATGAAAAT GTTTCTGTGG ATAAAACTGA TTACATGCAG AGACTGGAAT 000320 000321 GGAGTTAATT CTGGGTAGAT ATGGGATTCA AGAGATTGGT CTTCATGAGG CATTTATCAA GGATCTGCAA GGGATTTAGA 000400 000401 GGTGACGGAA GCACAGTCCT TCCTGGGCAG TTGCCTCTAG CCTGGTGGGA GGTGTTCCTC ACACCCAGGA CTCTCATCCA 000480 000481 TGGCAAAATA AAAAGTGAGA TATCGACTGG GCATGGTGGC TCACGCCTGT AATCCCAGCA CTTTGGGAGG TCGAGGCGGG 000560 000561 TGGATCACCT AGGCCAGGAG TTCGAGACCA GCCTGGCCAA CATGACGAAA CCCCATTTCT ACTAAAAATA CAAAAATTAG 000640 000641 CCATGTGTGG TGGAATGCAC CTGAAGTCTC AGCTACTCGG GAGGCTGAGG CACAATAATT GCTTGGACCC AGGAGAAGGA 000720 000721 GGCTGCAGTG AGCCGAGGTC GTGTCACTGT ACTCCAGCCT GGGTGACAGA GTGAGACTCC ATCTCAAAAA AAAAAAAAAA 000800 000801 GTGGATATCA CATCAGAGAA GCTCCTGGCC AGGTGGCCTT GAGGAACAGG GATGAGTTCA GCACTTAGAG ATGGAGTTGG 000880 000881 CTTTCCCCGT TGGAGGGAAA GGCATGAGAA GGGACATAGG TAAGAGGAAG TAGAGTAGTG CAGGGGCCAT TGAGTAGTAG 000960 000961 TCCTTCCAAG ACAGGACTTC ATCATAGAAC CACTTTCTCT GAGGAAGCTC TGCTTGGGGG AGGTTTTAAT TCATGAGGAA 001040 001041 GGCAAATTCA ATGGCTCTCA GGTGAGGTGG GAAACAGACA CCTACCAACA CTCCAAAGAG AACATGTACC TCTATAAAAG 001120 001121 GGCACAGTCT AGTGAACAAA GTCCACAGCT CTGGGTTTGA TTTCTAGCAC TGTCACTTAA TACTGTGTGA CCTTAGACAT 001200 001201 TCACTTAACT CTCTCAGCCT CAGGATACAA TCTGTAAAAA CAGGAGAATG CTTGTTCCCT GTGCCTTATA GGATTGATAT 001280 001281 GAGCATCAGG AGAGACAGTG GGCACAAAAT AGCACTGTCA ACTACTTCTT TCTAGTCAGT TATCTGGTCA TGTTTGTGAA 001360 001361 GCTCCCCAGG ACTGGGAACA TAGCATATGA TTTTTTTAAA GTTACTTGAT GAATGAATGA ATAAATGAAT GAGTAAATGA 001440 001441 ATGAATAATA TCTAAAGGCC TCCAACTAAA TAATAATCAA CTTCCTAACC GTACTGAAAG CCTTTAATTG ACTTTGGGGC 001520 001521 TGTTTGGCCT GGAGGAGGCT CTGAGTTAGT GGTGATCAGT TGGTGTCATG GTAGAGAAGA AAGCCTGTGA AGGTGGAGTC 001600 001601 ATTGTCATTA TCAGCATAGA GTCCATTACG CTCTCCTTCC CCATACACCT GGAGCCAGAC TTGGTCGCCC ACCTCCAGAT 001680 001681 GCAGGAGCAC AGAGCCGGAG GCCTGGTCCA CATTATTTTC CTGGTACTGA TCATAGGTGA AGAGCATAGC CTTGTCCTTC 001760 001761 TTGAAGAGGC TGACCTTCAC ATCCTTCATA TAGACTGTGA TGTGGTAGGC AAAGTAGTAC AGCCCAGGAA TGTTGCAGTG 001840 001841 GAATTTACCA GTGGAGCCAT CATAGTGGTT TTGCTGATTG TAGAAGATCT TGGTAAAGCG AATGGGCATG TTGGGGATAG 001920 001921 TAACGTAAGT CTCCAATCCC ACACTGAATG CTGAGCGGTA TACATAGGCA CCTTCTCCAG GTTCTCCTTT CCTGCCTTGG 002000 002001 ATTCCCGGAA AGCCTCGGGG ACCTTCAGCC CCGGGTACTC CGGTTTCACC GATGTCTCCC TTAGGACCAA TAAGACCTAA 002080 002081 GGAATGAGAA GACCTCAGTG ACTACAAAGA ACAGAACTCC TGCCTAGGAT GTCTCTCCTC CTCTATTCTG CCTACCCATC 002160 002161 ATTCAAGGCC TAGCTGAAGC TCTGCCTCCT CCTTGAAGCC TTCATTCTTC ATCAGGTCCA CGGGGTGCCA TCTCTGCCAT 002240 002241 CACGGCCTGG GGCCCCATTA TGGCCCGGAT GCCCTGGGAT GCCCGCCATC CAACCTGTGC AGGCCCCCTT GGGCAGGGGA 002320 002321 AGCAGGACTC CGGGCCCTTG AGTCGTGGTT TCCTGGTCAT GACCGGGCAG AGCTAATAGC AGTAGAACAG CTCCCAGCAA 002400 002401 CAGCATCCTG AGCCCTGGAA TCCACATGTG CACTGTCAGC CATGGAGAGA CAGACCCCAC ACACACACCC AGTTGGGACC 002480 002481 TACAAAGGAC TCCGTCCATC TCAGCAGAGT CTACTTCTAG GAGCTGCTTT CTAAGTATTC AACTTTTCCA GGAAGACTTT 002560 002561 TCTGAATATT GCAGCCCACC TTGATCTCTT TCTGCCCTGA AATCTGTAAT ACTTAGCATT ATTCCCTGTG TGTAGTCTCC 002640 002641 TTTCCTCACC AAGATTATGA ATTCAGTGAT TGCACAGATG ACACTCCTCT AATTTTCCCA TGTCTGAGCA CAGGACCAAG 002720 002721 CACAGGGAAA GCTCCAAGAG TCGACTTGCC AAGAATCCAT CCTTGGGTTT CCCAAGTACG ATGACACAGA TTGCTCCATT 002800 002801 CAATGCTAAC CAGCTTCTCT CCTCTGGCTC CTTTCTTCTT TTTCTTTCCC CCCTTCTCTC TCATTTTCTG TGTCTATTCC 002880 002881 TCCTTCTTAC TCTCTCATTC TCTTTCTTCC TCTACCCCTC TCCTGGGGCA CATGTTTGAC TATTGGGTAT ATTACATTTG 002960 002961 CACACATGCA CACACACAAA CACACACAGA GAAAAAGAGA GAGAGAGGGA GGGAGAGACT CACCTTGTGT TAAGCAGACA 003040 003041 ACGAGAGACA CATCATCCCA TGAACATATC CCCTGGCCCT TTGTTTGCCT GAGCCATCTT TAGCTGCCCC TCCTCCCCTG 003120 003121 TCTAATCTCT ATTCAGCCTT CAGGACCCAG TTTGGATGTC ATCTGTTTCA AGAAGTCCTC CTTGTTCTCC ATCTCACTCC 003200 003201 TTGGCTGGTT CTTTCCCCTC TGTGTTTCTC CAGTGCCCTG GTAATATGGT TTGGGTCTGT GTCCCCACCC AAATAGCACG 003280 003281 TCGACATGTG TTGGAGAAGG GGCCTGGTAG GAGGTGACTG AATCATGGAG GCAGACTTAT CCCTTGCTGT TCTCATGATA 003360 003361 GTAGGTGAAT TCTCACAAGA TCTGGTTGAA AGTGTGTAGC ACTTCCCCTA TATTCTCTCT CTCTCTCTTT CTCTCTCTCT 003440 003441 CTCCTGCTGC TGTGTGATGT GCTTGCTTCC CCTTCGCTCT TTCTTCCACC ATGATTGTAA GTTTTCTGAG GCCTCCCCAG 003520 003521 CCATGCTTCC TGTACAGCCT GTGGAACTGT GAGTCAATTA AACCTCTTTT CTTTATAAAA AAAAAAAAAA A |
Predicted Small Protein
Name | NONHSAT093872_smProtein_2699:2938 |
Length | 80 |
Molecular weight | 8814.1777 |
Aromaticity | 0.126582278481 |
Instability index | 50.3227848101 |
Isoelectric point | 10.0244750977 |
Runs | 13 |
Runs residual | 0.0242760534073 |
Runs probability | 0.0624651801123 |
Amino acid sequence | MSEHRTKHRESSKSRLAKNPSLGFPSTMTQIAPFNANQLLSSGSFLLFLSPLLSHFLCLF LLLTLSFSFFLYPSPGAHV |
Secondary structure | LLLLLLLLLLLHHHHHLLLLLLLLLLLHHHHLLLHHHHHHLLLHHHHHHLHHHHHHHHHH HHHHHLLEEEEELLLLLLL |
PRMN | LLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLHHHHHHHHHHHHHHHHH HHHHHHHHLLLLLLLLLLL |
PiMo | iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiTTTTTTTTTTTTTTTTT TTTTTTTTooooooooooo |