NONHSAT092521
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT092521 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intergenic |
Length |
1759 nt |
Genomic location |
chr3+:142849528..142851286 |
Exon number |
1 |
Exons |
142849528..142851286 |
Genome context |
|
Sequence |
000001 GGTGCAAAAC GGACTCAACT AGATTGAGAA AATCAGGAAA TTAGCTGGAA AAGATGGGAA AGCCCACACA ATTGGAAGAA 000080
000081 CAGTTGAAGA ACCAGGTGGG ATATTCTGGT TTCCTCCCTC CCTCCCCAAT CCCTCCATCC CTGCCCTCCC TCTTCCTTCC 000160 000161 GTGTTTCTTT CCCCTTCCTC CTTCCCTCTC TTTCTTTGTT GTATTTCACA CATTTAGAAT TCAAAGTCCT GGAAGAGAGA 000240 000241 GTTGGATCAG CTGAGGCTGG GTCAGGTGTT TGTGCCTTGG CACCTGAGCA AGCTACCTTG ACTGATAGTC TCACCAATCT 000320 000321 GCACACAATG TGGGCAAGTG ATTTTTCACA AGAAAATCAG GCTGCAATGA TCAAAAGTAG GGGAAGTGCA TGCCAGGTGG 000400 000401 TCTTAACCAA TAAATGTCTT CTGTATTCAT TAATATACTT TACTATTATT CTCCTGCTAC GTTGACTAAT TGGGGGTTAT 000480 000481 TTTCTTTAGA GTCCACTACA TACAAGGTTT TTCACTCTGC ATTGCTATGT TAAAATGTGG GCAGAGATGT GCCTCAGTAG 000560 000561 TTAATTGGGC CACCATGCTT GTTGGATATA AATAAGACCA TTCACTTACT TAGCCTTAAG TAATGCAGAT AAATGGGACA 000640 000641 CCAGATGGAA TTCATGTAGT GAAATTCATG CAGATACTGT ATTTTATGAT ATGCCTTCTT TCAGGGTTTA ATGATCATGC 000720 000721 CGCCTTATAC TTTTATAATG CTTCGTAAGT TTAACAAGTA CAGCAGATAT TGCTGATTTC CCACCCACTG CCCATTCTCC 000800 000801 CCTTCTTTCT TATTCGTAGA ACCTTGATTT TGTTCAGGGA GGCAATATGC TCAGCTAAAA ATATTTCCCA GTTTCCCTTG 000880 000881 TAGGTAGGAA TGATCATGTG ACAGCCAATG AGATGTAAAT GGAATTCTGC TGGGGATATC TGGGTAAGTT TTATATATCT 000960 000961 GATATAGGCA GAACTTTTTC TTGCCTGTTT TGTCCTTTTT CTTTCCTTTT TTTTTTTCTG GCTGGTCTGC AGATTGAGTA 001040 001041 TGGAAGTGGG GCCTCTACCT TGTGACTGAG AGGGAGCCAG GGAGTAAAAG CTGCTTGCAG AAAGAGGAGC CAGGGATATT 001120 001121 GATGACATCA TGAAGCCACT TCATCAGCGT GGACCACTGG TCTCCAGAAT ACCTATGATG TGGGAACAAT AAACACTTAC 001200 001201 TTGTTTAAGC TGTTGCTGCC GACTTTGTTA CTCACAGCCA AGTACAGTCC TAATGGATAC AGCAAATATT CTCATTAATA 001280 001281 TTTTATTAGA TCATTTGAAA CTTATGATTA CTGGGCAGAA ATAGGATTAT GATCTTTCTC TTATAGAAGA AGCTGAAACT 001360 001361 CAGAAGCTAA GTGACTTGCT CAAGGTCACA GAATATGGTA TGTATCAGAT TTGATGCCCA ATTTAGTGCT CTTTCTACTC 001440 001441 AGCCAGTGGT TCTCAGCTGG GTGTGGGACG GTCCCTGCAA TCTGGTTGGG GGAAAGATTG GGAGACAGCC TTTGGAATTT 001520 001521 TTTTTTTTCC ATGACTAGGG AATGGGACTG GCATTTAGTG GGCTGGAAGC AATAATGCTG AATGTTCTGC CTTGCTGAGG 001600 001601 ACAGTCCCAC ATAATGAATT GTCCTGCTCC AAATGTTAAT AGTGGTCCCC TTGAGAAATA CCGAGCTAAA TTAAGCCAAA 001680 001681 GAAAATTACA CACTGACTCA GAACTGAGAA TAAGGCTGTC TCATAATGAT ACTCAATAAA TGTTAATAAA TGATATCAC |
Predicted Small Protein
Name | NONHSAT092521_smProtein_53:253 |
Length | 67 |
Molecular weight | 7420.5621 |
Aromaticity | 0.151515151515 |
Instability index | 65.0484848485 |
Isoelectric point | 7.95843505859 |
Runs | 7 |
Runs residual | 0.0445472690982 |
Runs probability | 0.0458021046257 |
Amino acid sequence | MGKPTQLEEQLKNQVGYSGFLPPSPIPPSLPSLFLPCFFPLPPSLSFFVVFHTFRIQSPG RESWIS |
Secondary structure | LLLLLHHHHHHHHLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLEEEEEEEEEEELLL LEEELL |
PRMN | LLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLHHHHHHHHHHHHHHHHHHLLLLLLLLLLL LLLLLL |
PiMo | oooooooooooooooooooooooooooooooTTTTTTTTTTTTTTTTTTiiiiiiiiiii iiiiii |