NONHSAT091632

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Annotated Information

Transcriptomic Nomeclature

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Function

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Regulation

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Expression

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Allelic Information and Variation

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Evolution

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Labs working on this lncRNA

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Basic Information

Transcript ID

NONHSAT091632

Source

NONCODE4.0

Same with

,

Classification

intergenic

Length

2041 nt

Genomic location

chr3+:125635444..125648867

Exon number

5

Exons

125635444..125635660,125637707..125637769,125639668..125639748,125643809..125643958,125647338..125648867

Genome context

Sequence
000001 AACACTGCGG CCCCGCCCAC GTCATGGCGC CCGAGGAGAA CGCTGGGACC TAACTCTTGC TGCAGAGTTT GCAGCGCCGC 000080
000081 TTTCTGGCGG CGCGCGCGCT GCGCTCCTTC CCCTGGCAGG TGGGCGGCGG GGCGAGCGGA GAGGCCCGCA GGGCTCGCGG 000160
000161 GAGTCCAGGG GCAGACGGGA TGGGTCTCCG TGCAGAAGCC CCCGACACGC CCGCCACAGC TTAGAAGCAA AATTAACAGA 000240
000241 CTCATCAGAT TCTGAGCTTC TGCGGGATAT TTTGCAGAAG ACTGTGAAGC ATCCTGTGTG TGTGACGCAC CCGCCGTCAG 000320
000321 TCAAGTATGC CCGGTGCTTT CTCTCAGAAC TCATCAAAAA GACGTGCTGT ATTGCCCAGA AGCCATCGTG TTGCTGGTCG 000400
000401 GGGTCCTGCT GAGGCTGGCT GCCTGCCGGG AGCACCAGCG GGCTCCTGAG GTCTATGTGG CCTTTACTGT CCGCAACCCA 000480
000481 GAGACATGCC AGCTGTTCAC CACCGAGCTA GGCCAGGCCA GGATCAGATG GGAAGTGGAA CCTCGTCATG ACCAGAAACT 000560
000561 GTTTCCCTAT GAAGAGCACT TGGAGATGGC AATGCTGAAC CTCACACTGT AGGACTCACA CACGACTCCA ATGGGATTGT 000640
000641 GAGAATCAAG TCACTCTCAA GGGAAGAGGT TTCATATGGG AAAGCTGATA AAACTTTCAC TGGACTGGAA TGTTTGGAGA 000720
000721 ATGTTAATTT CCAAATCAGG AACTACAAAC TGCCCTCTAA TAAGACATCG GCTATCTAAG CGTGTGGGTG CTCCCTTTCT 000800
000801 GCCAGCAGTT CTGGTTCTTA AGGAAATCGC CATCACTCAG ACATGAAAAC TCTGGCTCCA AAAATAGCAT TTTCTTTGTG 000880
000881 CAAATAAAAA CGTGTGTATC AAGTATGTGG ACACACTCGG TTCCTCACAA AGCCAAGCCT GCTGCAGCTG CCACATCCCT 000960
000961 GGACACACTT GGTTCCTCAC AAAGCCAAGA CTGCTGCAGC TGCCACATCC GCGGACACAC TCAGTTCTTC ACAAAGCCAA 001040
001041 GCCCGCTGCA GCTGCCACAT CCCTGGGCTT ACGATGCAGC AGGTGCTTTT TTCAAGACAG GAATCAAAAT GTTAGGAACA 001120
001121 CGGCAGAAAG GTGACACCTG GAGACCAAAC GCAGGATAAG GAGTACTGCA GAGGTCACAG GGAAGTCACA GAACAGTAAT 001200
001201 ACGCTAGCAG GGGCATGGGG CATGAAGAAC AGAAGAAGAG AGGAAGTGTT TCCGAGCCTC CGGAAAAGAA ATCAGAGCCA 001280
001281 AGCACAGCTT CCCGGGTCAC AGAACCAATT CATTCACCAG GCGGCACCAC TGCCGTCATT TCAGCTTCTG GCCACTGGGA 001360
001361 GGCGCTGCTC AAAAGGGTTT GCCCTGAGAC TCCGAGAAGA AGCTGCGGGA AGGACAGCAG GGGTCCCGGG GTTTTAGCCT 001440
001441 CTGGCCCAGG AGTTGTATGT CCATAACCAA AGGGAGCACA GTCTGCACCC AGCTCTCATC CCATCGGAGC TGCTGCGACT 001520
001521 CCCGCAGGTT CTTCCAAAAC TGGTTTAGCT TGCCTGCAGG ATCAGGAAAG TTTGAGAAAA GCATCTGCAA AAAAATAAAG 001600
001601 AGCAGAGCTT ACCTCATTGC CTGTCCCCAC CCCATCCCAG GTCACCACCT GGCTGACCCC AGGTCCCCGA CCCAACAACA 001680
001681 ACCCCTCCCA AGTTCCTAAC TCTCTCACTT GGACTCGAGA CTCTTCACGC CCCAGCAGCG CTCCGCCTCC AACTTGACAT 001760
001761 CATGCTTTCT GGAAACTTCC CCGTATGTCC CACTTTCCCA CACTTGGTGC CCTGGAGCAC CTCCCGGCCT CTAACGTGCT 001840
001841 GTATGTTCCC CTGCGAGCAC CCTCCTCTTG GCCTCTGGCC AAGTCCCACC CATCTGTGGG TAACAAGGGG GTGTCGGTGT 001920
001921 TCTTTTCAGC CTTGCTAAAC TCTCTGAATc aaggatcaca aactacagcc tgcaggccaa atccagccca cagcctgtgt 002000
002001 ttgtaaataa agttttattg gaacaaagcc acacccctta a
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Predicted Small Protein

Name NONHSAT091632_smProtein_1214:1465
Length 84
Molecular weight 8658.6737
Aromaticity 0.0120481927711
Instability index 75.334939759
Isoelectric point 8.98675537109
Runs 11
Runs residual 0.00749665327979
Runs probability 0.0341330635448
Amino acid sequence MGHEEQKKRGSVSEPPEKKSEPSTASRVTEPIHSPGGTTAVISASGHWEALLKRVCPETP
RRSCGKDSRGPGVLASGPGVVCP
Secondary structure LLLLLLLLLLLLLLLLLLLLLLLLLLEELLLLLLLLLLEEEEELLLHHHHHHHHHLLLLL
LLLLLLLLLLLEEELLLLEEELL
PRMN -
PiMo -