NONHSAT091398

From LncRNAWiki
Jump to: navigation, search

Please input one-sentence summary here.

Annotated Information

Transcriptomic Nomeclature

Please input transcriptomic nomeclature information here.

Function

Please input function information here.

Regulation

Please input regulation information here.

Expression

Please input expression information here.

Allelic Information and Variation

Please input allelic information and variation information here.

Evolution

Please input evolution information here.

You can also add sub-section(s) at will.

Labs working on this lncRNA

Please input related labs here.

References

Please input cited references here.

Basic Information

Transcript ID

NONHSAT091398

Source

NONCODE4.0

Same with

,

Classification

intergenic

Length

1179 nt

Genomic location

chr3-:119382857..119384615

Exon number

3

Exons

119382857..119383529,119384098..119384323,119384336..119384615

Genome context

Sequence
000001 CAGAAAAGTA ATTTACCTCC CTGTTAGGAA GTTTGGAAAT TAAAAGCTCC TGGTTTGAGA TAGTGGCTCA GTGGTGCTTT 000080
000081 CAAGAACTTA GTCTTGGCTG GGTGTGGTGG CTCATGCCTG TAATCCCAGC ACTTTGGGAG ACTGAGGCCA GAGGATTGCT 000160
000161 TGAATCCTGG AGTTCAAGAC TGGCCTGGGC AACATAGTGA GAACCTGTCT CTACAGAAAA TAAAAACATT AGCTCGGCAT 000240
000241 GGTGGTACAT GCCTGTAGTT CAGTTACTTG GGAGGCTGGG CTTGAACCCA GAGGACTGAG GCTGCAGTGA GCCGTGATTG 000320
000321 TGCCGCTGCA TTCCAGCCTG GCTGACAGAG CAAGGCCCTG TCTTAAAAAA GCAAGCAAAC AAAAAAACCT AGGCTTGTTC 000400
000401 TATTTTTCTG CTCTTTACCC TTCTCATCCT TAGGCATATC CTATCTCATG ACTATGGTAA CTTCAAGCAT TACATCGTCA 000480
000481 CGCAACTATT CAAGCCTGGA TGAAAGCATG AACCAGCATG GACAAGTAAC AAACAGTTTG AAGACCAGGC TGAGTTCATG 000560
000561 ACCACACTTG TTGACTCTGG TGACTTCATA AGATGGCCCC CGCCTGCCTC GCCTGCCTCT TGTCTGCTGC TCCTTTTGAT 000640
000641 TCACCTACAA CAAGCTGTTC TCTGTTACCA GAATATGCCA CGTATTTTGT TTTACTTCTG GGACTGACTT TACAATCTGT 000720
000721 TCTTTCTTCC TGGAATGCCC TCCTCTAGCT GGGGAAAACC TACTCATCTT TTTAGACCAG ATTAAAAGTC ACCTTCCCTG 000800
000801 TGATGTTTTC TCGTGGAAAA AAATATTTTT TTAAGAGACA GTGGTCTCAC TATGTTGCCT AGGCTGGTCT CAAACTCCTG 000880
000881 GGCACAAGTG ATCCTCCCAT CTCAGCCTCC CAGAATACTA GGATTATAGA CATAAGCCAT CACGCCCCCA ACCTCATGAA 000960
000961 TTTTAGTTAG GTTATAGCAG TATAGTAAAA GTCCCTATGG ATTGAATTAT TTGCTCCCTC ATAAGTGTTT TTTCTTTGAA 001040
001041 TCCTAAGTAC ACTTATTTTA TTGGATTACA GTTTCTGAGT CAGTATCCGG GATAGACTGA AAGTTTCTTG AAGTGATAAT 001120
001121 TGTCTTATTC ATCTTTATAT CCCCTGTTCT TGGAACACAT AGTCTGTCCT GAATAAATG
[back to top]

Predicted Small Protein

Name NONHSAT091398_smProtein_557:706
Length 50
Molecular weight 5695.6977
Aromaticity 0.142857142857
Instability index 86.6104081633
Isoelectric point 5.41937255859
Runs 8
Runs residual 0.00121345835632
Runs probability 0.0158761702879
Amino acid sequence MTTLVDSGDFIRWPPPASPASCLLLLLIHLQQAVLCYQNMPRILFYFWD
Secondary structure LEEEELLLLLLLLLLLLLHHHHHHHHHHHHHHHHHHHHLLLLHHHHEEL
PRMN LLLLLLLLLLLLLLLLLLHHHHHHHHHHHHHHHHHHLLLLLLLLLLLLL
PiMo ooooooooooooooooooTTTTTTTTTTTTTTTTTTiiiiiiiiiiiii