NONHSAT091291

From LncRNAWiki
Jump to: navigation, search

Please input one-sentence summary here.

Annotated Information

Transcriptomic Nomeclature

Please input transcriptomic nomeclature information here.

Function

Please input function information here.

Regulation

Please input regulation information here.

Expression

Please input expression information here.

Allelic Information and Variation

Please input allelic information and variation information here.

Evolution

Please input evolution information here.

You can also add sub-section(s) at will.

Labs working on this lncRNA

Please input related labs here.

References

Please input cited references here.

Basic Information

Transcript ID

NONHSAT091291

Source

NONCODE4.0

Same with

,

Classification

intronic(AS),antisense

Length

1943 nt

Genomic location

chr3+:114341289..114343219

Exon number

1

Exons

114341289..114343219

Genome context

Sequence
000001 CCTCGTGCCA GCCCTAATAA AACTCTGAGA CTATTTTCTA TCACAATGAC AGCTGATGAA TTTAATGTGC CTCACAAACT 000080
000081 ATAGGAATTG TGATAGGAAG TTGACTCTGT CCTAGAGGCC ACTGACAAAC CTGATAAGGC TGTAGCAGGG GTCAGTCTCT 000160
000161 ATAGGAAACT TGGGCTATAT GAGCATGTAT GAGTTCTGTG GTTAAGAATC TGAAGCACTC AGTATAGCAA ACAAAATTCC 000240
000241 AAAGCTGAGT ACCAATGTAA TACGCTGGAT CGCTGTACCT ACTTGGACAA GAGTACATGC AACAGGCACA TACAATATAC 000320
000321 ATCTGGTTAA ATGTAAAATC ATCCATTGCT AAAGCATTTT AAACTTCTAG GAGAAATCTA CTGGCAATGT GTTAACAGCA 000400
000401 AGGACAACCA AAACAATAAA ATAACATCTC TTTCCTAAAA TTTAAGAACA TCAAGTAAGT GCCCCTTAGG CTGGGTTGTG 000480
000481 ATTCCTGGAA GTTTCAGCCT ATGAGAACCA TATTGGCGAC ATCAAAGACT CCCCCTCTTT CCAAAAAGCA ATTCACTTCA 000560
000561 GATGCTGCCA CACAATCGAA TGCTTTTATG GCCACCATGT TTTTTTGGTT TTTGTTTCGT CTTTTGTTTT TTCCATGCTT 000640
000641 AATGAACATG CCAGATTCTT GAAATAGAAA GAAGATGAGA AAACCCAGTA AGATGGAATA CCTCTAGAAA AGAAACTAGG 000720
000721 CAGGGACCTG ATGGTAAAGG ATAAAAACAC ATTCCAACAG GAATTCTACT TTTAGGGAGA GTATGAGTTA TTAAGAAGGA 000800
000801 TGTGGAAGGC ACATTTTGGC TATGAAAGCT GGTCCGTGGA CTCCTCTGCC AGTCTCACAT CAGACAGGAT GCAACCATCC 000880
000881 CCACTCCATT CCTTCGACAA CTTCCCAGAG CACATTCAAT CAGTGTCCCT TAAATTGAGG ACAATACTAT ATTTGGGTTT 000960
000961 AATACTGTGA GGACAGTCAT TTAGTTTTCC TGTGGCAGGA TGATAAATTT CCTGGGAACC AAATAAGGAT TCTCATTGCA 001040
001041 TTCTTCTGCT TGATACTATG AATGCAGAAG AATAAAGAAG AGGGTGTGAC AAATCATATT TTCCAAAGGT CGGGTGTGGG 001120
001121 GAGGTTCCCT AACGTTTAAA AGCAACCAGT TGTTAGCAAA GTGATCTTTA GAACAGTATT AGCAAGAATG TTTGCTCTAC 001200
001201 ATCCACTATA GATATTCTCT CCTGCTTAGC TAGGCATGTA AGTACTGTGA GCATAATGTA AATACTCAGA ACAGAAATGC 001280
001281 ATGGAAAGCT GGTGGAGTGA AACTCCAAAT GAACAATTAA TTCCACTTTC ACTTCCCCCA TCTACCTCCC TGAATACTAC 001360
001361 CTCCCTGCCC CCACTCACCT ATCTTCCTCC CCCCAACAAG CATGTTTGCT AGGCATGTCA AGGCTGACAT CCATCGGTGG 001440
001441 CAGTATGAAA CCTATGCCTA CAGGCTGCTC CTGAGCATAG CCTCAAGGCT CTGCCATTGT CCGTAGAGTG CTCTAAGTTG 001520
001521 TGCCCGCTAA AAATCTTCAT CATTCCATTT GACTGTTTGG TAGTATTTCT TTAATTGTAT TTTTTGTTTG TTTGTTTTAA 001600
001601 AAACACCCTT TATTTCCTGC TTGCCTTAGA GACACCAAGA ATAAAATCCT TGACACATCA AATTCTGGAA CCTCACCACT 001680
001681 CACCAGGACT ATGGTTCCTG ATCCAAGGAG TGACGACTGA GAATCAGCAC ACAGTCTCTT GAGGGTGTCC AGGCCTGGCT 001760
001761 GTTAAGCTCC CTGCTCTGAT TAGTTTGTCG AGTTCACAGT GTTCCAGAGT GCTGAAGCAC AGAAATTAGG GAGGGGAGGT 001840
001841 GGAAGGAAAA TCACTGGAGC CTCTTACGAT CTAACTTCCA CTAACTGGGA GGAAATGTCT TATAAATAAA CAACAGTAAG 001920
001921 AGAAACAAAA AAAAAAAAAA AAA
[back to top]

Predicted Small Protein

Name NONHSAT091291_smProtein_500:661
Length 54
Molecular weight 6130.2286
Aromaticity 0.169811320755
Instability index 44.2377358491
Isoelectric point 9.78204345703
Runs 7
Runs residual 0.0281868384722
Runs probability 0.0350140056023
Amino acid sequence MRTILATSKTPPLSKKQFTSDAATQSNAFMATMFFWFLFRLLFFPCLMNMPDS
Secondary structure LEEEEELLLLLLLLLLLLLHHHHHHHHHHHHHHHHHHHHHHHHLHHHLLLLLL
PRMN LLLLLLLLLLLLLLLLLLLLLLLLLLLLHHHHHHHHHHHHHHHHHHLLLLLLL
PiMo iiiiiiiiiiiiiiiiiiiiiiiiiiiiTTTTTTTTTTTTTTTTTTooooooo