NONHSAT091132

From LncRNAWiki
Jump to: navigation, search

Please input one-sentence summary here.

Annotated Information

Transcriptomic Nomeclature

Please input transcriptomic nomeclature information here.

Function

Please input function information here.

Regulation

Please input regulation information here.

Expression

Please input expression information here.

Allelic Information and Variation

Please input allelic information and variation information here.

Evolution

Please input evolution information here.

You can also add sub-section(s) at will.

Labs working on this lncRNA

Please input related labs here.

References

Please input cited references here.

Basic Information

Transcript ID

NONHSAT091132

Source

NONCODE4.0

Same with

,

Classification

intergenic

Length

1554 nt

Genomic location

chr3+:110607663..110640510

Exon number

4

Exons

110607663..110607756,110620481..110620612,110624630..110624748,110639356..110640510

Genome context

Sequence
000001 GGAGGAGCCA AGATGGCCGA ATAGGAACAG CTCCCGTCTG CAGCTCCCAG CGTGAGCGAC GCAGAAGACG GTGATTTCTG 000080
000081 CATTTCCATC TGAGGTTGTA CAAGAATAAT CTGGAAACAT CACACTAAAG AAGAGGAAAG CAGTATAATC TGGAGGACTC 000160
000161 AAATTTAGAG TCACACCAAA GGGATCCAAA TCCCTGATTC AGCAATTATT TTCTGTGTGA ACTCAGTAAG TCATTTGGAT 000240
000241 CCTCACATAC TCCAGCCAGT AATTGAAGAC ATAAGAATCT CCACAGCTTT ACTGCAAGAA GGGGAGTCTT TGAACACATG 000320
000321 TTATACGCAT GTCAGCAAAT TGAAGATTAT TGAAACACCT TTAGCTGACT GAGGATGATA TGGCTGAGGT TAGCTGGAAG 000400
000401 TTTAGAATCC CCTGAAAAAC TTACCACAAA GAATAGATTC TGGACTACAG AGTCAGGCTG CAGATTACGC CTGGGTTTTC 000480
000481 TTAGGCATGG TTTTCTTCCA TGGAAAACTT TCCTGAACCA ACCACCTTGA CACAGTGGGT TTGCCACAAA AAGAAAATAA 000560
000561 ATAAGTAAGC TGTGTGAGCA CATATGTGTT GAGAGTGTGT GTATGTATGT GGCTGCATGA TATTGGGTCC ACTGTCTGCT 000640
000641 GGCAAGGGGT AACCATGGCT GAGGTGACCA CTGCTCAGAA GGCTTCGTCT CCCTACTCAG ACCTACACCT TTGGAATCTC 000720
000721 AGCAGGGCAC AGTGAGAAAG CAGCACCATT TTCAACAGCC AACACCTACC CAGTGAAGCC AGAGACTGCA GACAACCAAT 000800
000801 CAACTGATTT CCTCTTGATG GAATTTGGTT ATAATCTCAA TTACCCACGG AATCTGAGAT AGCCTCTGGA TTATTGAGCT 000880
000881 CTGCTAGAAC AGTGGTATCC TTATAATGCT AAGATGGCTG CTCCAGGTCA AGCTGAATTG AATATTTAAA GAGATATGTC 000960
000961 CCCATTTGGT TCTGAGGTTC ATAAATGCTA GTGAATCTAT GCAAAAATAC ATCATTTAAC ATTTATTCCA AGCTTACTGT 001040
001041 ATGCCAGACA CAGCAGCAAG CACTTCACAC ATATTAACCT TCATCATGTC TTATTCTTAT CTTCACCATG TCATGCTTTG 001120
001121 ACAAAAGATC ACACAATCAT TAAGTGAAAG GCAAGCATTC AAACTCAGTC CCATCTGATT CAAGATCAGT TTGGCAATAT 001200
001201 AGAAGAAATC AGCTAGTATT ATCAATCTCA AATTTCAAAT GCTATTATGA AAATCTCTTA GTAAAGAAAA TAATAAATAG 001280
001281 CTGCAGCCCT GTTCATTTAA GGCGTTAGCT ACTTAATCTC TTAAAATCAA TCCCCTAGGG AGAGTACTGA TTTATTAGAG 001360
001361 AAAAATGAAT GCAGTACAAT ATAAACATTA CATTTTCAGA GAATAATTTC TAAGAAATTC TAAGTGAAGA TCAGTCAATG 001440
001441 ATGTTGTTAG TACACTTAAT ACTTTATCTT TCTATATATT TTACATTGTA TAACCCACCC ACAAAAAAAA AAAAAAAAAA 001520
001521 AAAAAAAAAA AAAAAAAAAA AAAAAAAAAA AAAA
[back to top]

Predicted Small Protein

Name NONHSAT091132_smProtein_374:529
Length 52
Molecular weight 6032.0115
Aromaticity 0.137254901961
Instability index 55.7431372549
Isoelectric point 10.8866577148
Runs 9
Runs residual 0.0222286934576
Runs probability 0.0357121827711
Amino acid sequence MIWLRLAGSLESPEKLTTKNRFWTTESGCRLRLGFLRHGFLPWKTFLNQPP
Secondary structure LEEELLLLLLLLLLLLLLLLLEEELLLLLEEEELLLLLLLLLLHHHLLLLL
PRMN -
PiMo -