NONHSAT091077
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT091077 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
sense |
Length |
6796 nt |
Genomic location |
chr3-:107762145..107773586 |
Exon number |
2 |
Exons |
107762145..107766139,107770786..107773586 |
Genome context |
|
Sequence |
000001 AGATATTTTC TTGTTCAATT TAAGGAGAGG TAAATTTGGT ATCAATAGAA AAAATGTTTC TGAAAAATTT AAACCCTGGA 000080
000081 AATGTATTTA TGGCATGGAG TCAGATGTTT CAGGGAGAGA AGAACAAATC AAGAAGCATT GCAAGTATGC TCATATGGAA 000160 000161 TGCTTAAGGC TTGTGGTTAA AAAATATATA TATATGGCTG TCAATGTCTT AGGCTCATGG TAGCAGCAGA AATCGTAATA 000240 000241 ATTCTTTTGT CACATGGGTT ATATCCATAT TGGAGAGAAT TAACTCAGGT GAAATTAACT TGTACACTGT TTGGTTTTAT 000320 000321 AATATTTAGA GGGATCACAA CTGACTGATG TCCCTTTGAA GTACCATTCT TCATAAATCT TTTTTTTTCA GAATGGGCCA 000400 000401 GCCAACTGTG ACATCCCTTG GATCGGAGAT TTAGAACTAG AAAGTATTCT TTCTACATTA TTAGGGAAGA AAAGGAGTTA 000480 000481 CTTGGCGGTT AGCAATATTC TATTTTGttt tgttttgttt ttagagacag ggtctcatta tgttgaccag gctggcctcg 000560 000561 agctcctggg ctcaagcaat gctcccacct cagcctccca agtagctggg actacaggca tgtgccacta cacctggcAG 000640 000641 TGTTTATTCT GATAAATACA TTTATGAGCT CAAAAATGTA ACTCTAAAAC CTTATCTCTG AACTTCCATA TTACCATCAG 000720 000721 AAATTTAGAT AGTTGTTTAG TTCTCTTTTT CTTTGTAGAA CATAGATATA AGGCATGGTT TCATTGAAGT CAGTTGTATA 000800 000801 TACATGTAAC TATCCTGATG TTCCCAAATA AAGCTCTGTA TTTCTGCTTA GTTTATTGGG GAGGCTGCTA AATGTAGTGC 000880 000881 ATCCCAACCC ATTTTACCCT GTTCTACTTT AAAAAGAGGT TGGCTTCTTG TTTGGATACA AGGACCAAGT CACTCCCCCA 000960 000961 GGTTCCTCCA CAGTAAGGGA GGCCTATTTA AAGCCGCCCA TGGCACTAAC AGAAACTGGA CTCCTATGAG CTCAGATACA 001040 001041 TAACTGGGCC TCACAGGGGT GGGACAGTAT GTAGTCTAGG AATTGGAAGG ATCCATTCCA TATCAAAGAA CTGAAGCATC 001120 001121 GTGTTGCCCT CTCAGCAGCA AGAGTAAGGT GATGCCCCTG TCAGTTATAG TTCCTGAGTT CCTCTGTCTT TGATTCTTTG 001200 001201 CCTATTAGCC AGCTAGCTCA CCCTCTTGTT TATGCCACTG TTTTTTATCC TATTCATGCC TTCTCACAGA CAACTTTTCT 001280 001281 TACCTACAGC TTTGGACTCA TCCTTGTCTC CTTTCTGTTT CTTTTTCACT TTCCCTTCCC ATCACCAACT TTCTGGGTTT 001360 001361 TTTTCTGTTT CTTCTTAGAG TCCAGTGGCA GGGAGAAACT TGTCAGTCCA GTCTGTTGCC ATTTTTCCTG TTTGAGAAAG 001440 001441 ACTCACCAGC TTTTGGCTGG CTCACAGATT GGCTTTCCTT GGGTCAGGAC CCACCCTTTT CCCTGCCAGC TTTGGAAGCT 001520 001521 TGACAGAATT CGAGTGTGCA GTGGTGGTAA ATAAATAGTA AGGAACACAG AGCAGTCCTG GAGGCGTGCC TCCATCTGCT 001600 001601 GATGAGAAAA TCCAGTGCTG TCATCCAGCC CAGGTCCCAG CGGAATGGGC CTCTCTGTTC AGTAGGATCC CCCTCCTGCT 001680 001681 GAGTGGTTCA TGGCATGTTT CTGTTCAACG CTTTTCCATC TGTAGGATTC TTATTCTGTA tttatttgtt tttttgggtt 001760 001761 tttttatttt ttgagatgga gtctcgctct gtcgcccagg ctggagtgca gtggcacgac cccagctcgc tgcagcctct 001840 001841 gcctcccagg acgagggaga tcctcccacc tcagccttcc acgtagctgg gactacaggc atgcaccaca ggcatgcacc 001920 001921 accacgccag ctaatttttg tatttttggt agagacaggg ttgcatcatg ttgcccaggc tggtcttgaa tgcctgagct 002000 002001 caagcaatct atttgccttg gcctcccaaa gtgctgggat tacaggcatg agccaccacg gccagccTTC TCATTTGTTT 002080 002081 TTTTTATAAG GAAGCTATCT CTTCTTCCCT CCCCAACTAG GGTATTCTTT TTCCCTTTCG TCACTTTGCT CATGTACTGT 002160 002161 ATTCCTTCAA CTTCATTAAT GAATCCATTT GGAAGCAGTG AAAAAGGCAA CTCAGAAAGC TAAGAAGAAA TAGATAGAGG 002240 002241 AATACTCAGA GCTATCTGAG TATTTTCTTT AGTTTGTTAG CTCTTTGGAG CTTTGAAACT GGAAAGACCC AGGGAGTGAT 002320 002321 GTGGAGAAAG AGACTGAGCT TGTAAGACAC AGGAGCAGTG AGCTAAGGGA GATGGAGTAG TGGGGACAAA TTCTGGCACA 002400 002401 TTCTGTCTAC ACTCTGGGTA GATAGAGGAG GGAGGATGGA GCACCCATGG TGGGGGTATG TTGGTGACAG CATTTTCCCA 002480 002481 CCAGCCAGTG TAACAAGTGG CTGATTTGGG GGAAAGATGG CATAAACAAA TGAGAGAATG TGTTTACTAT TTGATGTAGA 002560 002561 TGGGTTATTT GCTTCATTTT TCAAATCAGT GTATATAATC AAGAATATTC AGCATGTTTG AATAGACTGT CAGAGCTGGA 002640 002641 ACTCTTTCAT TAACATCTCT GGCACCTTTA GTTTTAGCCC TGAACATTTT ATCTTAAAAT TAAACATTAC CAAATGCCTT 002720 002721 AGtttatttc atttattaaa tttatattct tatttgttat ttatatCAGC TTCCAATCAG AAGACTATAC AACCTCCTAG 002800 002801 GAATAACTGA AGTGAAGTGA TGGACTCCGA TTTGGAGAGT AGTAAGACGT GAAAGGAATA CACTTGTGTT TAAGCACCAT 002880 002881 GGCCTTGATG ATTCACTGTT GGGGAGAAGA AACAAGAAAA GTAACTGGTT GTCACCTATG AGACCCTTAC GTGATTGTTA 002960 002961 GTTAAGTTTT TATTCAAAGC AGCTGTAATT TAGTTAATAA AATAATTATG ATCTATGTTG TTTGCCCAAT TGAGATCCAG 003040 003041 TTTTTTGTTG TTATTTTTAA TCAATTAGGG GCAATAGTAG AATGGACAAT TTCCAAGAAT GATGCCTTTC AGGTCCTAGG 003120 003121 GCCTCTGGCC TCTAGGTAAC CAGTTTAAAT TGGTTCAGGG TGATAACTAC TTAGCACTGC CCTGGTGATT ACCCAGAGAT 003200 003201 ATCTATGAAA ACCAGTGGCT TCCATCAAAC CTTTGCCAAC TCAGGTTCAC AGCAGCTTTG GGCAGTTATG GCAGTATGGC 003280 003281 ATTAGCTGAG AGGTGTCTGC CACTTCTGGG TCAATGGAAT AATAAATTAA GTACAGGCAG GAATTTGGTT GGGAGCATCT 003360 003361 TGTATGATCT CCGTATGATG TGATATTGAT GGAGATAGTG GTCCTCATTC TTGGGGGTTG CCATTCCCAC ATTCCCCCTT 003440 003441 CAACAAACAG TGTAACAGGT CCTTCCCAGA TTTAGGGTAC TTTTATTGAT GGATATGTTT TCCTTTTATT CACATAACCC 003520 003521 CTTGAAACCC TGTCTTGTCC TCCTGTTACT TGCTTCTGCT GTACAAGATG TAGCACCTTT TCTCCTCTTT GAACATGGTC 003600 003601 TAGTGACACG GTAGCACCAG TTGCAGGAAG GAGCCAGACT TGTTCTCAGA GCACTGTGTT CACACTTTTC AGCAAAAATA 003680 003681 GCTATGGTTG TAACATATGT ATTCCCTTCC TCTGATTTGA AGGCAAAAAT CTACAGTGTT TCTTCACTTC TTTTCTGATC 003760 003761 TGGGGCATGA AAAAAGCAAG ATTGAAATTT GAACTATGAG TCTCCTGCAT GGCAACAAAA TGTGTGTCAC CATCAGGCCA 003840 003841 ACAGGCCAGC CCTTGAATGG GGATTTATTA CTGTTGTATC TATGTTGCAT GATAAACATT CATCACCTTC CTCCTGTAGT 003920 003921 CCTGCCTCGT ACTCCCCTTC CCCTATGATT GAAAAGTAAA CAAAACCCAC ATTTCCTATC CTGGTTAGAA GAAAATTAAT 004000 004001 GTTCTGACAG TTGTGATCGC CTGGAGTACT TTTAGACTTT TAGCATTCGT TTTTTACCTG TTTGTGGATG TGTGTTTGTA 004080 004081 TGTGCATACG TATGAGATAG GCACATGCAT CTTCTGTATG GACAAAGGTG GGGTACCTAC AGGAGAGCAA AGGTTAATTT 004160 004161 TGTGCTTTTA GTAAAAACAT TTAAATACAA AGTTCTTTAT TGGGTGGAAT TATATTTGAT GCAAATATTT GATCACTTAA 004240 004241 AACTTTTAAA ACTTCTAGGT AATTTGCCAC GCTTTTTGAC TGCTCACCAA TACCCTGTAA AAATACGTAA TTCTTCCTGT 004320 004321 TTGTGTAATA AGATATTCAT ATTTGTAGTT GCATTAATAA TAGTTATTTC TTAGTCCATC AGATGTTCCC GTGTGCCTCT 004400 004401 TTTATGCCAA ATTGATTGTC ATATTTCATG TTGGGACCAA GTAGTTTGCC CATGGCAAAC CTAAATTTAT GACCTGCTGA 004480 004481 GGCCTCTCAG AAAACTGAGC ATACTAGCAA GACAGCTCTT CTTGAAAAAA AAAatatgta tacacaaata tatacgtata 004560 004561 tctatatata cgtatgtata tacacacatg tatatTCTTC CTTGATTGTG TAGCTGTCCA AAATAATAAC ATATATAGAG 004640 004641 GGAGCTGTAT TCCTTTATAC AAATCTGATG GCTCCTGCAG CACTTTTTCC TTCTGAAAAT ATTTACATTT TGCTAACCTA 004720 004721 GTTTGTTACT TTAAAAATCA GTTTTGATGA AAGGAGGGAA AAGCAGATGG ACTTGAAAAA GATCCAAGCT CCTATTAGAA 004800 004801 AAGGTATGAA AATCTTTATA GTAAAATTTT TTATAAACTA AAGTTGTACC TTTTAATATG TAGTAAACTC TCATTTATTT 004880 004881 GGGGTTCGCT CTTGGATCTC ATCCATCCAT TGTGTTCTCT TTAATGCTGC CTGCCTTTTG AGGCATTCAC TGCCCTAGAC 004960 004961 AATGCCACCA GAGATAGTGG GGGAAATGCC AGATGAAACC AACTCTTGCT CTCACTAGTT GTCAGCTTCT CTGGATAAGT 005040 005041 GACCACAGAA GCAGGAGTCC TCCTGCTTGG GCATCATTGG GCCAGTTCCT TCTCTTTAAA TCAGATTTGT AATGGCTCCC 005120 005121 AAATTCCATC ACATCACATT TAAATTGCAG ACAGTGTTTT GCACATCATG TATCTGTTTT GTCCCATAAT ATGCTTTTTA 005200 005201 CTCCCTGATC CCAGTTTCTG CTGTTGACTC TTCCATTCAG TTTTATTTAT TGTGTGTTCT CACAGTGACA CCATTTGTCC 005280 005281 TTTTCTGCAA CAACCTTTCC AGCTACTTTT GCCAAATTCT ATTTGTCTTC TCCTTCAAAA CATTCTCCTT TGCAGTTCCT 005360 005361 CTTCATCTGT GTAGCTGCTC TTTTGTCTCT TAACTTACCA TTCCTATAGT ACTTTATGCA TCTCTGCTTA GTTCTATTAG 005440 005441 TTTTTTGGCC TTGCTCTTCT CCTTGATTTT AAAATTCCTT CTATAGCTAG AGCTTTTCTT TCTTTCATTC TCTCTTCCTG 005520 005521 CAGTGTTTTG CATACATCAG AAGCTAGGTA CATAAGTTAA ATGATTGAGA GTTGGCTGTA TTTAGATTTA TCACTTTTTA 005600 005601 ATAGGGTGAG CTTGAGAgtt ttctttcttt ctgttttttt tttttgtttt tttttttttt tttttttttt ttttttttGA 005680 005681 CTAATTTCAC ATGCTCTAAA AACCTTCAAA GGTGATTATT TTTCTCCTGG AAACTCCAGG TCCATTCTGT TTAAATCCCT 005760 005761 AAGAATGTCA GAATTAAAAT AACAGGGCTA TCCCGTAATT GGAAATATTT CTTTTTTCAG GATGCTATAG TCAATTTAGT 005840 005841 AAGTGACCAC CAAATTGTTA TTTGCACTAA CAAAGCTCAA AACACGATAA GTTTACTCCT CCATCTCAGT AATAAAAATT 005920 005921 AAGCTGTAAT CAACCTTCTA GGTTTCTCTT GTCTTAAAAT GGGTATTCAA AAATGGGGAT CTGTGGTGTA TGTATGGAAA 006000 006001 CACATACTCC TTAATTTACC TGTTGTTGGA AACTGGAGAA ATGATTGTCG GGCAACCGTT TATTTTTTAT TGTATTTTAT 006080 006081 TTGGTTGAGG GATTTTTTTA TAAACAGTTT TACTTGTGTC ATATTTTAAA ATTACTAACT GCCATCACCT GCTGGGGTCC 006160 006161 TTTGTTAGGT CATTTTCAGT GACTAATAGG GATAATCCAG GTAACTTTGA AGAGATGAGC AGTGAGTGAC CAGGCAGTTT 006240 006241 TTCTGCCTTT AGCTTTGACA GTTCTTAATT AAGATCATTG AAGACCAGCT TTCTCATAAA TTTCTCTTTT TGAAAAAAAG 006320 006321 AAAGCATTTG TACTAAGCTC CTCTGTAAGA CAACATCTTA AATCTTAAAA GTGTTGTTAT CATGACTGGT GAGAGAAGAA 006400 006401 AACATTTTGT TTTTATTAAA TGGAGCATTA TTTACAAAAA GCCATTGTTG AGAATTAGAT CCCACATCGT ATAAATATCT 006480 006481 ATTAACCATT CTAAATAAAG AGAACTCCAG TGTTGCTATG TGCAAGATCC TCTCTTGGAG CTTTTTTGCA TAGCAATTAA 006560 006561 AGGTGTGCTA TTTGTCAGTA GCCATTTTTT TGCAGTGATT TGAAGACCAA AGTTGTTTTA CAGCTGTGTT ACCGTTAAAG 006640 006641 GTTTTTTTTT TTATATGTAT TAAATCAATT TATCACTGTT TAAAGCTTTG AATATCTGCA ATCTTTGCCA AGGTACTTTT 006720 006721 TTATTTAAAA AAAAACATAA CTTTGTAAAT ATTACCCTGT AATATTATAT ATACTTAATA AAACATTTTA AGCTAT |
Predicted Small Protein
Name | NONHSAT091077_smProtein_1694:1885 |
Length | 64 |
Molecular weight | 7369.4983 |
Aromaticity | 0.206349206349 |
Instability index | 70.7714285714 |
Isoelectric point | 5.50994873047 |
Runs | 12 |
Runs residual | 0.0455134434726 |
Runs probability | 0.0439778013307 |
Amino acid sequence | MFLFNAFPSVGFLFCIYLFFWVFLFFEMESRSVAQAGVQWHDPSSLQPLPPRTREILPPQ PST |
Secondary structure | LEEELLLLLHHHHHHHHHHHHHEEEEEELLLHHHHLLEEEELLLLLLLLLLLLLEELLLL LLL |
PRMN | LLLLLLLLHHHHHHHHHHHHHHHHHHLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLL LLL |
PiMo | ooooooooTTTTTTTTTTTTTTTTTTiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii iii |