NONHSAT091001
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT091001 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intergenic |
Length |
2732 nt |
Genomic location |
chr3-:106555658..106959479 |
Exon number |
8 |
Exons |
106555658..106557629,106558322..106558439,106639813..106639907,106640905..106640940,106646682..106646841,106758922..106758963,106848735..106848839,106959290..106959479 |
Genome context |
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Sequence |
000001 GGCGTTGGCC TCCGCGGCCC GTGCGAGTGC GCCCTTCTCG GGTCCCCTAG GTCGCGGGGC AGCCGGGGCG GAAGGGGCTT 000080
000081 GTTCATTATT TTGAGAGTTT GTTGTGAACG TCATAACCTT TCGTCCTTAA ATATTGCCGA TACTTGACCT ACGCAAGAGA 000160 000161 CAATGTCATG TGATTCAGCC TAATATCTCA GAGGATGCAG CATTCAAGGT TCTATCTTGG AAGCAGAGAC TGTGCCCTCA 000240 000241 CCAGATGCTG AACCTGCTGA GCACCCTGAT CTTCCACTTC ACCTTCATCA GAACTGTTTT CGTATCAGGA TGATGCTGGC 000320 000321 CTCATACAAT GAGTTAGGGA CGCGCATGAA ATTTGGTGCC GTGACTCGGA TCGGCGGACC TCCCTTAGGA GATCAATCCC 000400 000401 CTGTCCTCCT GCTCTTTGCT CCATGAGAAA GATCCACCTA CGACCTAAGG TCCTCAGACC AACAAGCCCA AGAAACATCT 000480 000481 CACCAATTTC AAATCCGAAA TACTTCATCT AATCTGGCAA ACACATGTGG CAGGTTTTTC TCACCGCATA AAATATGTTA 000560 000561 TAGAGTAGTC CATCTATTTC TCTTCCATGG AAGAGTTCAT CTGGTAGATT GGACTACCAC TTTTCCTTGT GGAGACCTAT 000640 000641 TCTGTTGGGT TAGAGATGAC AGAAAATCTT ATTTGTCGGT TGGTTGGTTT GTTCAAGAAT ACACTGACCT TCTACAAGAA 000720 000721 AGGAGAGCTC TTTGACACCT GGAAATTTTA CAGAAGCTTG GGACAGCTCT GAATGGCAAC ACGGTCCTGA GATATGTGAT 000800 000801 TACCTGGGAC TTTCATTGGA CCTGCATTTC AGCTCTACTC TCCTCACTGC CCTATGCTGC TTTGACCCTA AAAGTGAAGC 000880 000881 CAGCTTGGCC AGGTGCAGTG ACTCACACCT GTAATCCCAG CACTTTGGGA GGCCGAGGTG GGCAAATCAA GAAGTCAGGA 000960 000961 AATCGAGACC ACCCTGGCCA ACATTGTGAA ACACCATCTC TACTAAAACA CAAAAAAATT AGCCAGGTGT GGTGGCACGC 001040 001041 ACCTGTAGTC CCAGCTACTC GGGAGGCTGA GGCAGGGGAA TCACTTGAAC CCGTGAGGAG GAAATTGCAG CGAGCCAAGA 001120 001121 TCGCGCCACT GCACCCCAGC CTGGGCGACA GAGAGAGACT CCATCTCAAA AACAAAACAA AACAAAACAA AAAAAACAAA 001200 001201 AAGTGAAGCC AACTCAATCG TCTCATAGAA CTGATCTTTA CGGTGTTTTT AAATAAACAT AGAAATTGGC CCTCCCAGTC 001280 001281 TTAAAACTTC AAAAACTTAC ATTTGTCTTA CCTCAGTTCC TTTCTCAGGA ATCCAATCAT CAAGGCTCCC AGATAGTATC 001360 001361 AATGAACGGA AACTTACCAG ATCACGATAT CTGGACAATG AGATGTCAGA TCCCCCTCAT CCATCCTGAT TACCTAACTG 001440 001441 ACTACCTGCT TCCTGTTGGC CAACTACTCT TCCTTACCCC TCCCTAATTC TTGTTTTCCC ACAAATGGTT ACATTTCTGT 001520 001521 CCTGCTATAG AAGCCCTTAA TTTTAATTGG TCGAGGAGAT GGATTTGAGA CTGATTTTTT GCTCTCCTTG GCTGTTGCAC 001600 001601 CTGAATAGCC TTTTTCCCTG GCAATACTTT TTGTCTCAGT GATTGGCTTT CTGTGCAATG AGCAATGGGA CCAAACTTCT 001680 001681 GGTGTTTTGG TAACAAATTT TGGTTTCCTG ACTGTGAATG CATTGCTTGT GACTCAGCTG CCATGAGCTG GGAGAGTTTC 001760 001761 AAAAGCCCTC TAAGCAGCTA CCTGACCATT TTGGCCAGAG GTGGATTTTC GTCTCTCCCC ATTTGGGCCC ACTTCTGCCA 001840 001841 ACCCCAACCA TGTTCCTGAT TGCCTAGGAA GAACAGCCTT TGAAATTTGA CGTCTATGTA CGGAAAGGTG AGTGTCTTTT 001920 001921 ATGGGTACTA GACAGTGGGA ATGGTTCCTC TCCATTTGGG AAATCCCAAA GGCATATCAG TTTGCAGGTT AAACAAGCCA 002000 002001 AACTGATGGA GAGAGGATAA TACCTTGACT GATTCAGTTT GAACACTCTT GGGGCTTGTT CATTGCTACA GAAGTTGGAT 002080 002081 TGTGTTTTGG TGATTGTTTG CTTGTGTATG TCTATGTAGT TATGGGATGT CAGGGTTTGA TCCCAGAGTG CAGCCCACAT 002160 002161 GGGTGCATTC TTTGGGTTAG TCTGTATGTA GTTGTGGGTT GACAGAGCAG GGGAAATTCT ACAGCCATAC CACTCTGAGT 002240 002241 GTGGCTGATC TTGTCTGATC GCGATGTCTT TGCATTGTAG TGCTGTCTTA CAATTGAATT CATTTTGCTG TTGAATGGGA 002320 002321 AAGCAGGATG GAGGTCCATG TATGTATGCT TTTATGCTGC TGCTCTGAAC AGGGTTGGGC CTGATTAGTA CTGTGATGCT 002400 002401 CTTCTGTGGT GCTGTTTGGC CCCAGTGTTC TTTGGAATCC GGGGAATTTT GGCCTTTAAA AGTTAAACTG CCATGGGAAC 002480 002481 TGATTTACCC AGTTTTAGTT CATAGCCTTC ATTGTATTAT CTATCAGGGC AAAAAAGTTA GCCGTGTGAA CATGTTCGTA 002560 002561 AACCAGTGAG TTTGTATTGC TATCTCATGC CTAGAATTCT AAAGTAAAAA CTATTGGGTC TTTGTTTGTA TATATGTATA 002640 002641 TGGGTCTAAA TGTTATGTGT TGTTTTTACA GGGTACAGAT TGGCTCATAA ATAAAAGAGC ACTCATAAAT TAAGTGAAAA 002720 002721 AAAAAAAAAA AA |
Predicted Small Protein
Name | NONHSAT091001_smProtein_1664:1858 |
Length | 65 |
Molecular weight | 7203.2188 |
Aromaticity | 0.1875 |
Instability index | 59.8578125 |
Isoelectric point | 5.46319580078 |
Runs | 10 |
Runs residual | 0.00765625 |
Runs probability | 0.0330242006712 |
Amino acid sequence | MGPNFWCFGNKFWFPDCECIACDSAAMSWESFKSPLSSYLTILARGGFSSLPIWAHFCQP QPCS |
Secondary structure | LLLLLLLLLLLLLLLLLLLLLLLLHHHLHHHHLLLLHHHHHHHHHLLLLLLHHHEEEELL LLLL |
PRMN | - |
PiMo | - |