NONHSAT090907

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Annotated Information

Transcriptomic Nomeclature

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Function

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Regulation

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Expression

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Allelic Information and Variation

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Evolution

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Labs working on this lncRNA

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Basic Information

Transcript ID

NONHSAT090907

Source

NONCODE4.0

Same with

,

Classification

intergenic

Length

5813 nt

Genomic location

chr3+:101405571..101411383

Exon number

1

Exons

101405571..101411383

Genome context

Sequence
000001 ATGGGAAGAG ACCTTATAAG GTCGCTGCGG GGATGGGGGC CGGAAATCTC CTCCCCAATA TCCTTCGATG CTCCTGGCCC 000080
000081 TCCTTGATGA CGTAATCATC GCGAGGCGAA AGATCTCGTT TTCCCTGACA GCTGACTTCC TCTGGCGCAA TTCATCCAGA 000160
000161 GGCGCTGGAG GGTTCTCGGG CCCAGAGGGC CTGCCAAAAA GGCAGTCAGA CAGTTGGTTT ATGAGTCATT CTGTCTCTGT 000240
000241 CTCTCCTCTC tttttttttt ttgagacgga gtttcgctct tgttgcccag gctggagtgc agtggcgcaa tctcggctca 000320
000321 ccgtaacctc cgcctcccag gttcaagcga ttctcctgcc tcagcctccc tagtagctgg gattacaggc atgtgccacc 000400
000401 acgtccggct aattttgtat ttttcgtaga gacggggttt ctccatgttg gtcaggctgg tctcgaactc ctgacctcag 000480
000481 gtggtccgcc ctcctcggcc tcccaaagtg ttgggattat aggcgggagc cactgcgccc ggccCATTCT GCCTCTCTTA 000560
000561 CTGCCAAGTA TCCTAGAGCC ATCTTCCGGC TGCAGGGAAT GTGAACTGAA GAGAAAGGTG TCCTCTCTTC TCATAAAGAG 000640
000641 ACCCAAAGAC GAATGCCCCG CAGGTAAAAC CAGTCACATT TTGCCTTCCC TGTTGGCCCA TTTCCTCAAC CAAACAAATT 000720
000721 AATAGTTTCA CCATTTATAA GAAAGTAATG ACAACCGAAC CGTTTCTCAG GCTGTGCGAA TCGAACAGTG CGCGTTGGCG 000800
000801 CTTTGCATTa attataatta acattctttg agcgctttct ctgtgccggg aattatgcca aaggcttttt aaacatgagc 000880
000881 tcattcagtt tccaaaattc ctattaagta CCTGCCTAAG AACTACAATT CGGAGTTGCT GCCTAGTGAA GTTGAGGGGG 000960
000961 TCGGTGGAGC CCCGCTGGGA GGCCAAGGGC TCAATCTGTT GAGCCCTTCT ATGATGCTAC ATATTTCATC GTATGACAAG 001040
001041 GAGTGGCCAG AGGCAATTCT TGAATTCTGT GGGAGGTTGC AGTATATGAC TAGGAAACAA ATGTAATGAC TGAGTTCTGC 001120
001121 TTTCTATGTA TGCAACTCAC CCTAAAAACG TTTTGTAAGG TAGCTGGTTG AAGATATTTG GAATGTCTAA CAAGTTGGCT 001200
001201 GACTAATGTC ATGAAAACTG TACAATTGTG TTGGAGCCAG TCtttttttt tttttttttt ccttgagacg gagtttcgct 001280
001281 ctttcattca ggctggagtg aagtggcgcg gtctcggctc actgcaacct ccgccctctg ggttcaaacg attgattctc 001360
001361 ctgcctcagc ctcccgagta gctgggatta caggcgcctg ccaccacgct cggctaattt ttgtattttt agtagagatg 001440
001441 gggtttcacc atgttgtcca ggctggtccc aaactcttga cctcaggtga tccactcgtt ctcccaaagt gctaggatta 001520
001521 caggcgtgag ccaccgcgcc gggccTGGAA CCAGTCTTAA GAATGATGTT AGGTggccag tcatggcggc tcatgcctgt 001600
001601 aattacggca ctttgggagg ccgaggtggg cggatcacct gaggttagga gttccagccc agcctggtca aaatggtgaa 001680
001681 accccttctc tactaaaaat acaaaaatta gctgggcgtg gtggcgcacg cctgtaatcc cagctcctcg ggaggctgcg 001760
001761 ggaggagaat cgcttgaacc cgggaggcag aggttgcatt tagccaagat cgcgccacta cactccagcc tgggcaagaa 001840
001841 gagcaaaact ccatatcaaa aaaaaaaaaa aaaaGGAggc cgggtgcagc ggctcacgtc tgtaatcccg gcactgtgga 001920
001921 atgccgaggc gggcggatca cgaggtcagg agtttgagac cagcctgggt aacacgatga aaccccgcct ctacaaaaaa 002000
002001 aaaaaaaaat tagcctggtg tggtggtgcg cgcctgtagt cccacctact cgggaggctg aggcaggaaa atcgcttgaa 002080
002081 cccgggaagc ggaggttgca gagagccaag atcgcaccac tgcactccag cctgggcgac agagcgagac tccgtgtgaa 002160
002161 aacaaacaaa caacaacaac aaaaaaCCAA AACAAAACAT CTTTCAGAAA TAGTCCTGGC TTCTACAAGA TCCAAGGCAC 002240
002241 AGCTGAGTTT AGGTAGCCGG TGGAACCAAG ATCCACCTGA AGGAATGCAG TCCTTTTTTG TTCCACAGAA CCTCAGAATT 002320
002321 TATAGTCCCT TCCCAATATT TTAGAAAGAT TTTGTTTTAT TGTTCTTTAA AATTACGTTT GGCCTGACTG GTTCTGTGGA 002400
002401 AGAAATGCAG GAAACTGGAC CTTAGGGATT TTGGCTGTAT TTCACTCTTT ACTGGAGGGC CTTCTTGTCA GGGTTCCTTG 002480
002481 TAACACACTC CCATAACAAA CAAATTGTGC TCAAAATGCT CTTAGAATAG GGAGAAATTT TGCAGAGAGA GACCTCTAAA 002560
002561 TGAATTTATA TTATACAGTG TCATAAAGTA GAGCTTCTGA CACCATCCGT AAATTATTGC TGACTTTATC CATGCTTTTG 002640
002641 CTTTTATCAT AGGCAAAAGG TTCAGCTACA CTCTATTCTC TTTTTATTCA TTTATGGAGC AATACTGAAC CAAACTTGGT 002720
002721 GCCCTTTTCA GCCTCTGTCC CTGTGAGAAC AGTGTGTTGC TTCCCTTCAC AGTTTCGTCA CCCATTTGTA CATATTTCCC 002800
002801 TGCtatatta gtttcctgta gttgctgtaa caaattacta tggacttggt aacaacacag atacatattt tctcacagtt 002880
002881 ctggaggcag taagttcaaa atcagtatca ctaggctgaa atcaaggtat ctttgtgctc tctggatcaa ggatctaagg 002960
002961 cagaacgtgt tccttgctct tccaatttcc actcatctaa accactcttg aattcctaac ccatagaaac tgttagatca 003040
003041 taaatgtgtg ttgttttaaa ctgtttaggg gagtaatttg ttaatataga aataggtaaT ATAGGAGGTA AGGAAAAATT 003120
003121 GACAATGAGG ACTTGGTGAA TCGTGGTATC ATTTGTCAAG AGTTGACAGA TAAGAGGAAG GGAGTAGGTT TGTCAGGGAA 003200
003201 AGGGTTAAtt tttttttttt ggagacttgt tgcccaggct ggagtacaat ggcatgatct tggctcacca caacttccgc 003280
003281 ctcctgggtt caagtgattt tgctgcctca gcctcccgag tagctgggat tacaggcatg tgccaccaca cccagctaat 003360
003361 tttgtatttt tagtagagat gggatttctc catattggtc aggctggtct cgaactcctg acctcaggtg atccacccgc 003440
003441 ctcggcctcc caaagtgctg ggattatagg catgaaccgc tgcgctcagc cCGAAAGGGT TAATTTTGAA AAGGCTGGGT 003520
003521 TCAAGATGCT GATAGGGATA TTAAGGTACA ACTGTGTAGT GGGAAGTTAA ACATGTTCAG AAGAGTGTTT GTAATATGAt 003600
003601 ttattttatg ttttaatttt tttttgagat agggcctcac cttgtctccc aggctgaagt gcagtggatg atcagggttc 003680
003681 actgcagtcc ctacctcctg ggctcaagtg atcatcccac ctcagcccca tgaatagctg ggactatagg tgtttgccac 003760
003761 catggccagc taattttttg tatttttggt ggagatgggg tttcaccatg ttgccttggc aggtcttgaa ctggactcaa 003840
003841 gcgagcagcc cacctcagcc ttccaaagtg ctgggatcac aagcgtgagc caccatgtcc agccAAGGAT ATATTTTAGT 003920
003921 AGTAATGAAC TTATGGTGAC AGAATATGTG GGATAACGTC ACCTACtgtc acaagctggc ttctctggaa acagttactg 004000
004001 agactgactt tggggttcaa gatatttgtt acagatcaag tcttgtgaag ggaaggggga gaaaacagtg ttaggcagag 004080
004081 gaagaagttg catatgttat aggcccaact aaacctcagt cAGgccgtgt gtggtggctt atgcctgtaa tgccagcact 004160
004161 ttgggaggcc aaggtgggag gattgcttga gcacaggagt ttgaggcTGA AGTGAGCTAT GATCGCACCA CTGCAATCAA 004240
004241 TCAATcaata aacttcagtc aaccctgcca ggagctatgg aacaattatt gtttgttgga gtgttctgtg ttgggctaaa 004320
004321 tgtgaagcct ctttatactt ctaccttact cagtcaccat atgggggctg ccccagagag gtcatgacct caagtgagga 004400
004401 agtactcagc agctgagcca ggccctactg atagctggag gatgctgctg cccatgctgc ccactgtgag gcagcaagcc 004480
004481 cttgcttgaa gggggatctg gatagtatgt ttctgtgtct accacCCCTA GAAATGGTGC CTAGAGTGAG TCATCACAAA 004560
004561 AAGAATCAGG Atagcttggt gtagtggcag gtgcctataa tcccagctac tcaggagact gtggcaggag aatgacttaa 004640
004641 accagggagt tggaggttgc agtgaggtga ggtcacacaa ctgcactcca gactgggtga cagagtgaga ctccatctca 004720
004721 aaaaaaaaaa aaaaagaaaa gaaaagaaaA AAGAAAAAGA ATCAGGAAAT ACTAATATTT AAAGGATAGG TGAATGGAGG 004800
004801 AAAATAATCA ATTGAAGGAG GCTGAGCAGA TGAGGTCAAA GAAGATAGAG ATCCATAACA GTAACCTCAT AGAAGCTTAT 004880
004881 GGAAGCATTT TGACAGTGCT AAAAGCCACA TAAAGTTCAA GTAAGACAGT TTCAGAAATG TATAAACATG AATGCCTTTG 004960
004961 CAGTGACTTA AGTGTGATTC TGTTGTTTCC TTCTAAAAAT ACTGCCTTCT CAGGTGTGGG AAGGATTCTA TCTTTTTAGG 005040
005041 CTTTACCACC ATAGTTCTCT GCAGGCTTGC AATCCTGAAT CAGGCTTGAC TTCAGAAAGT GCTTTAAAAG GGAggctggg 005120
005121 cgcggtggct catgcctgta atcccagcac tctgagaggc tgaggTtgtg gggaaaagca agagagatca gattgttact 005200
005201 gtgtctgtgt agaaagaagt agacatagga gactccattt tgttctgtac taagaaaaat tcttctgcct tgagattctg 005280
005281 ttaatctatg accttacccc caaccccgtg ctctctgaaa caggtgctgt gtcaaactca gggttaaatg gattaagggt 005360
005361 tgtgcaagat gtgctttgtt aaacaaatgc ttgaaggcag catggtcctt aagagtcatc accactccct aatctcaagt 005440
005441 acccagggac acaaacactg cggaaggccg cagagacctc tgcctaggaa agcaaggtat tgtccaaggt ttctccccat 005520
005521 gtgatagtct gaaatatggc ctcgtgggaa gggaaagacc tgaccgtccc ccagcctgac acccgtaaag ggtctgtgct 005600
005601 gaggaggatt agtgtaagag gaaggcatgc ctcttgcagt tgagacaaga ggaaggcatc tgtctcctgc ccgtccctgg 005680
005681 gcaatggaat gtctcggtat aaaacccgat tgattgtacg ttccatctac tgagatagga agaaaacgcc ttagggctgg 005760
005761 aggtgtggga caagccggca gcaatactgc tttgtaaagc attgagatgt tta
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Predicted Small Protein

Name NONHSAT090907_smProtein_3794:3955
Length 54
Molecular weight 5764.3295
Aromaticity 0.0943396226415
Instability index 40.9452830189
Isoelectric point 5.24237060547
Runs 11
Runs residual 0.047284859641
Runs probability 0.0458560164443
Amino acid sequence MGFHHVALAGLELDSSEQPTSAFQSAGITSVSHHVQPRIYFSSNELMVTEYVG
Secondary structure LLLEEEEEEEEEELLLLLLLHHHHLLLEEEEEELLLLEEEEELLEEEEEEEEL
PRMN -
PiMo -