NONHSAT090907
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT090907 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intergenic |
Length |
5813 nt |
Genomic location |
chr3+:101405571..101411383 |
Exon number |
1 |
Exons |
101405571..101411383 |
Genome context |
|
Sequence |
000001 ATGGGAAGAG ACCTTATAAG GTCGCTGCGG GGATGGGGGC CGGAAATCTC CTCCCCAATA TCCTTCGATG CTCCTGGCCC 000080
000081 TCCTTGATGA CGTAATCATC GCGAGGCGAA AGATCTCGTT TTCCCTGACA GCTGACTTCC TCTGGCGCAA TTCATCCAGA 000160 000161 GGCGCTGGAG GGTTCTCGGG CCCAGAGGGC CTGCCAAAAA GGCAGTCAGA CAGTTGGTTT ATGAGTCATT CTGTCTCTGT 000240 000241 CTCTCCTCTC tttttttttt ttgagacgga gtttcgctct tgttgcccag gctggagtgc agtggcgcaa tctcggctca 000320 000321 ccgtaacctc cgcctcccag gttcaagcga ttctcctgcc tcagcctccc tagtagctgg gattacaggc atgtgccacc 000400 000401 acgtccggct aattttgtat ttttcgtaga gacggggttt ctccatgttg gtcaggctgg tctcgaactc ctgacctcag 000480 000481 gtggtccgcc ctcctcggcc tcccaaagtg ttgggattat aggcgggagc cactgcgccc ggccCATTCT GCCTCTCTTA 000560 000561 CTGCCAAGTA TCCTAGAGCC ATCTTCCGGC TGCAGGGAAT GTGAACTGAA GAGAAAGGTG TCCTCTCTTC TCATAAAGAG 000640 000641 ACCCAAAGAC GAATGCCCCG CAGGTAAAAC CAGTCACATT TTGCCTTCCC TGTTGGCCCA TTTCCTCAAC CAAACAAATT 000720 000721 AATAGTTTCA CCATTTATAA GAAAGTAATG ACAACCGAAC CGTTTCTCAG GCTGTGCGAA TCGAACAGTG CGCGTTGGCG 000800 000801 CTTTGCATTa attataatta acattctttg agcgctttct ctgtgccggg aattatgcca aaggcttttt aaacatgagc 000880 000881 tcattcagtt tccaaaattc ctattaagta CCTGCCTAAG AACTACAATT CGGAGTTGCT GCCTAGTGAA GTTGAGGGGG 000960 000961 TCGGTGGAGC CCCGCTGGGA GGCCAAGGGC TCAATCTGTT GAGCCCTTCT ATGATGCTAC ATATTTCATC GTATGACAAG 001040 001041 GAGTGGCCAG AGGCAATTCT TGAATTCTGT GGGAGGTTGC AGTATATGAC TAGGAAACAA ATGTAATGAC TGAGTTCTGC 001120 001121 TTTCTATGTA TGCAACTCAC CCTAAAAACG TTTTGTAAGG TAGCTGGTTG AAGATATTTG GAATGTCTAA CAAGTTGGCT 001200 001201 GACTAATGTC ATGAAAACTG TACAATTGTG TTGGAGCCAG TCtttttttt tttttttttt ccttgagacg gagtttcgct 001280 001281 ctttcattca ggctggagtg aagtggcgcg gtctcggctc actgcaacct ccgccctctg ggttcaaacg attgattctc 001360 001361 ctgcctcagc ctcccgagta gctgggatta caggcgcctg ccaccacgct cggctaattt ttgtattttt agtagagatg 001440 001441 gggtttcacc atgttgtcca ggctggtccc aaactcttga cctcaggtga tccactcgtt ctcccaaagt gctaggatta 001520 001521 caggcgtgag ccaccgcgcc gggccTGGAA CCAGTCTTAA GAATGATGTT AGGTggccag tcatggcggc tcatgcctgt 001600 001601 aattacggca ctttgggagg ccgaggtggg cggatcacct gaggttagga gttccagccc agcctggtca aaatggtgaa 001680 001681 accccttctc tactaaaaat acaaaaatta gctgggcgtg gtggcgcacg cctgtaatcc cagctcctcg ggaggctgcg 001760 001761 ggaggagaat cgcttgaacc cgggaggcag aggttgcatt tagccaagat cgcgccacta cactccagcc tgggcaagaa 001840 001841 gagcaaaact ccatatcaaa aaaaaaaaaa aaaaGGAggc cgggtgcagc ggctcacgtc tgtaatcccg gcactgtgga 001920 001921 atgccgaggc gggcggatca cgaggtcagg agtttgagac cagcctgggt aacacgatga aaccccgcct ctacaaaaaa 002000 002001 aaaaaaaaat tagcctggtg tggtggtgcg cgcctgtagt cccacctact cgggaggctg aggcaggaaa atcgcttgaa 002080 002081 cccgggaagc ggaggttgca gagagccaag atcgcaccac tgcactccag cctgggcgac agagcgagac tccgtgtgaa 002160 002161 aacaaacaaa caacaacaac aaaaaaCCAA AACAAAACAT CTTTCAGAAA TAGTCCTGGC TTCTACAAGA TCCAAGGCAC 002240 002241 AGCTGAGTTT AGGTAGCCGG TGGAACCAAG ATCCACCTGA AGGAATGCAG TCCTTTTTTG TTCCACAGAA CCTCAGAATT 002320 002321 TATAGTCCCT TCCCAATATT TTAGAAAGAT TTTGTTTTAT TGTTCTTTAA AATTACGTTT GGCCTGACTG GTTCTGTGGA 002400 002401 AGAAATGCAG GAAACTGGAC CTTAGGGATT TTGGCTGTAT TTCACTCTTT ACTGGAGGGC CTTCTTGTCA GGGTTCCTTG 002480 002481 TAACACACTC CCATAACAAA CAAATTGTGC TCAAAATGCT CTTAGAATAG GGAGAAATTT TGCAGAGAGA GACCTCTAAA 002560 002561 TGAATTTATA TTATACAGTG TCATAAAGTA GAGCTTCTGA CACCATCCGT AAATTATTGC TGACTTTATC CATGCTTTTG 002640 002641 CTTTTATCAT AGGCAAAAGG TTCAGCTACA CTCTATTCTC TTTTTATTCA TTTATGGAGC AATACTGAAC CAAACTTGGT 002720 002721 GCCCTTTTCA GCCTCTGTCC CTGTGAGAAC AGTGTGTTGC TTCCCTTCAC AGTTTCGTCA CCCATTTGTA CATATTTCCC 002800 002801 TGCtatatta gtttcctgta gttgctgtaa caaattacta tggacttggt aacaacacag atacatattt tctcacagtt 002880 002881 ctggaggcag taagttcaaa atcagtatca ctaggctgaa atcaaggtat ctttgtgctc tctggatcaa ggatctaagg 002960 002961 cagaacgtgt tccttgctct tccaatttcc actcatctaa accactcttg aattcctaac ccatagaaac tgttagatca 003040 003041 taaatgtgtg ttgttttaaa ctgtttaggg gagtaatttg ttaatataga aataggtaaT ATAGGAGGTA AGGAAAAATT 003120 003121 GACAATGAGG ACTTGGTGAA TCGTGGTATC ATTTGTCAAG AGTTGACAGA TAAGAGGAAG GGAGTAGGTT TGTCAGGGAA 003200 003201 AGGGTTAAtt tttttttttt ggagacttgt tgcccaggct ggagtacaat ggcatgatct tggctcacca caacttccgc 003280 003281 ctcctgggtt caagtgattt tgctgcctca gcctcccgag tagctgggat tacaggcatg tgccaccaca cccagctaat 003360 003361 tttgtatttt tagtagagat gggatttctc catattggtc aggctggtct cgaactcctg acctcaggtg atccacccgc 003440 003441 ctcggcctcc caaagtgctg ggattatagg catgaaccgc tgcgctcagc cCGAAAGGGT TAATTTTGAA AAGGCTGGGT 003520 003521 TCAAGATGCT GATAGGGATA TTAAGGTACA ACTGTGTAGT GGGAAGTTAA ACATGTTCAG AAGAGTGTTT GTAATATGAt 003600 003601 ttattttatg ttttaatttt tttttgagat agggcctcac cttgtctccc aggctgaagt gcagtggatg atcagggttc 003680 003681 actgcagtcc ctacctcctg ggctcaagtg atcatcccac ctcagcccca tgaatagctg ggactatagg tgtttgccac 003760 003761 catggccagc taattttttg tatttttggt ggagatgggg tttcaccatg ttgccttggc aggtcttgaa ctggactcaa 003840 003841 gcgagcagcc cacctcagcc ttccaaagtg ctgggatcac aagcgtgagc caccatgtcc agccAAGGAT ATATTTTAGT 003920 003921 AGTAATGAAC TTATGGTGAC AGAATATGTG GGATAACGTC ACCTACtgtc acaagctggc ttctctggaa acagttactg 004000 004001 agactgactt tggggttcaa gatatttgtt acagatcaag tcttgtgaag ggaaggggga gaaaacagtg ttaggcagag 004080 004081 gaagaagttg catatgttat aggcccaact aaacctcagt cAGgccgtgt gtggtggctt atgcctgtaa tgccagcact 004160 004161 ttgggaggcc aaggtgggag gattgcttga gcacaggagt ttgaggcTGA AGTGAGCTAT GATCGCACCA CTGCAATCAA 004240 004241 TCAATcaata aacttcagtc aaccctgcca ggagctatgg aacaattatt gtttgttgga gtgttctgtg ttgggctaaa 004320 004321 tgtgaagcct ctttatactt ctaccttact cagtcaccat atgggggctg ccccagagag gtcatgacct caagtgagga 004400 004401 agtactcagc agctgagcca ggccctactg atagctggag gatgctgctg cccatgctgc ccactgtgag gcagcaagcc 004480 004481 cttgcttgaa gggggatctg gatagtatgt ttctgtgtct accacCCCTA GAAATGGTGC CTAGAGTGAG TCATCACAAA 004560 004561 AAGAATCAGG Atagcttggt gtagtggcag gtgcctataa tcccagctac tcaggagact gtggcaggag aatgacttaa 004640 004641 accagggagt tggaggttgc agtgaggtga ggtcacacaa ctgcactcca gactgggtga cagagtgaga ctccatctca 004720 004721 aaaaaaaaaa aaaaagaaaa gaaaagaaaA AAGAAAAAGA ATCAGGAAAT ACTAATATTT AAAGGATAGG TGAATGGAGG 004800 004801 AAAATAATCA ATTGAAGGAG GCTGAGCAGA TGAGGTCAAA GAAGATAGAG ATCCATAACA GTAACCTCAT AGAAGCTTAT 004880 004881 GGAAGCATTT TGACAGTGCT AAAAGCCACA TAAAGTTCAA GTAAGACAGT TTCAGAAATG TATAAACATG AATGCCTTTG 004960 004961 CAGTGACTTA AGTGTGATTC TGTTGTTTCC TTCTAAAAAT ACTGCCTTCT CAGGTGTGGG AAGGATTCTA TCTTTTTAGG 005040 005041 CTTTACCACC ATAGTTCTCT GCAGGCTTGC AATCCTGAAT CAGGCTTGAC TTCAGAAAGT GCTTTAAAAG GGAggctggg 005120 005121 cgcggtggct catgcctgta atcccagcac tctgagaggc tgaggTtgtg gggaaaagca agagagatca gattgttact 005200 005201 gtgtctgtgt agaaagaagt agacatagga gactccattt tgttctgtac taagaaaaat tcttctgcct tgagattctg 005280 005281 ttaatctatg accttacccc caaccccgtg ctctctgaaa caggtgctgt gtcaaactca gggttaaatg gattaagggt 005360 005361 tgtgcaagat gtgctttgtt aaacaaatgc ttgaaggcag catggtcctt aagagtcatc accactccct aatctcaagt 005440 005441 acccagggac acaaacactg cggaaggccg cagagacctc tgcctaggaa agcaaggtat tgtccaaggt ttctccccat 005520 005521 gtgatagtct gaaatatggc ctcgtgggaa gggaaagacc tgaccgtccc ccagcctgac acccgtaaag ggtctgtgct 005600 005601 gaggaggatt agtgtaagag gaaggcatgc ctcttgcagt tgagacaaga ggaaggcatc tgtctcctgc ccgtccctgg 005680 005681 gcaatggaat gtctcggtat aaaacccgat tgattgtacg ttccatctac tgagatagga agaaaacgcc ttagggctgg 005760 005761 aggtgtggga caagccggca gcaatactgc tttgtaaagc attgagatgt tta |
Predicted Small Protein
Name | NONHSAT090907_smProtein_3794:3955 |
Length | 54 |
Molecular weight | 5764.3295 |
Aromaticity | 0.0943396226415 |
Instability index | 40.9452830189 |
Isoelectric point | 5.24237060547 |
Runs | 11 |
Runs residual | 0.047284859641 |
Runs probability | 0.0458560164443 |
Amino acid sequence | MGFHHVALAGLELDSSEQPTSAFQSAGITSVSHHVQPRIYFSSNELMVTEYVG |
Secondary structure | LLLEEEEEEEEEELLLLLLLHHHHLLLEEEEEELLLLEEEEELLEEEEEEEEL |
PRMN | - |
PiMo | - |