NONHSAT090409
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT090409 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intergenic |
Length |
1759 nt |
Genomic location |
chr3+:71633700..71635458 |
Exon number |
1 |
Exons |
71633700..71635458 |
Genome context |
|
Sequence |
000001 TTTGCCATCA GTGACAGTTG AAGGAGAGCG GGGTGGGAGG TGGTGTTTTC AACCCCCTTT CTCCCTCTCT CCCGTCCTCC 000080
000081 CTCGGTCTCT CCTCTTTCTT TCTGCACTTT GTCCAATGAA AGAAGGCGAG TTCGGGAGGT GAAAGTTCAG CAGAAGGACA 000160 000161 AACCCCTGTT TGCAAGGAAA CAGAAACCCC GCCAGCCAGC GAGGGGTTTT CTCCCCTGTT TCTCGGAATC AGGAGAGTGT 000240 000241 GAATGTGGGA CGAGCTTCTG CCCCCTTGTC AGAGCCACTG CAGGAATGTG CAATCGAGTC CACTTTGGGG GAAGGTGGCT 000320 000321 GCATCAGGAA CTGTGTTCTT GCCACGACTC CTCTTAGGAA AACGCCTGGG GGCTAGCATG TCAGTCCGTT GTTTAACACA 000400 000401 AATTACCTGC TCTCCCAGTG ATCAGTCACG TGCAAAAAGC TTTGTCCAAT TCTTTGAAAA GGTGAGATTT TTTTTTTTCT 000480 000481 TTTTGCGGTT TTTGAAGTTT GGTTGAATTT AGAAATTCGA AGGAATAAAC TAAGAGCCTG AATTAAATGT TTTGAAATAT 000560 000561 ACATACATAA AACAAAAGAC ACTAGTATTT CTTTCACTTT TATCAATACG CATAGAGAAG GAAGCAGAGT ATGTGTTTCC 000640 000641 AAAACGTGAC TTGGAAAGCT GTAAGACCTC TATGTCttgt tgttgttgtt gttgttgttg ttAACAGAAG TAAATTTTTT 000720 000721 CAGACCCACC ACCACAGAAG TGGCCAGACT CCCAAACCAG CATTTCCAGC TACTGGCTGG CTGGTGTACA CCAGGCCAAT 000800 000801 TCTTTATGAG AATATATTAA AAGTCACCCC TGTGGATTCC TACAAAGTAC TTCCCCTTGC GGGGAGGGGA GAGGCTTACT 000880 000881 GTCCCTTTGG TCTTGAGACC AGCACAGTTG TAGATAATAT CCTGAAAAGG TTATTATTAA ATTCTTTCGC GTAATGCCCC 000960 000961 TTTACAAATA TTGTTAAACA TTAATTTACA GAAGAACTTA AATCTTAATT TCAAGGGTGG CATAAGACTA TCGCTTTGAA 001040 001041 ATTGTATCTT TCGCAAGTTA AAAAAAAAAA ATAACAAAGC CATTCGCTGA TGCTACAGAA TAAAAGAAAG GGAGGCTGCT 001120 001121 AAGGTAATTT CAGCCTGGTA GAATTCACAT TGCATGCATG CTGCATAAAG TTCCATGCTA TCCAGATAAG ACTATTCACT 001200 001201 GAATCTTTTA GACTAGAATC TAGACCAATA AAATGCATTT TAGTTTGTAT GGAATGTCCT AGCTTCCTAG AGGCTAGGGT 001280 001281 TCGACGTCTT GTTTGTCAAG ACATAAAGGG Attaatgaca tacccactgt gtgctagacc acagagtggg cacagaggga 001360 001361 tgaaaaaata aaaattcctg cccttgagga gctcacagtc taAGCTGTCA ATaataacat ctaacattta ttaaatacta 001440 001441 tgatctaggc actgaactaa aagctttatg tcaactcagt taatactgcc aacaactctt tgaCATCACT GGAAATTCCA 001520 001521 TATGCTGAAT TCACACGGAA TTAAGTGGAA ATCTACAAAG TAGCCAGTCT ACTGGTTCTG TAGTGGTCAA CCTATTAAAA 001600 001601 ATGGTTTTTA ATTTCTAAAG TACTTTATGC CAAATATAAC ATGTTTATGG TATATGCCTG ACTGTAGAAT TATAACTCAG 001680 001681 GGGAATAACG ACTTATTTAA ATGTAACAGA TCTATTCATA GTCTGTAAAG AACAATTCAT CCTCTGATCT TGTTTTTCA |
Predicted Small Protein
Name | NONHSAT090409_smProtein_242:505 |
Length | 88 |
Molecular weight | 9980.6686 |
Aromaticity | 0.149425287356 |
Instability index | 53.4298850575 |
Isoelectric point | 10.2182006836 |
Runs | 10 |
Runs residual | 0.0233169129721 |
Runs probability | 0.0194930224342 |
Amino acid sequence | MWDELLPPCQSHCRNVQSSPLWGKVAASGTVFLPRLLLGKRLGASMSVRCLTQITCSPSD QSRAKSFVQFFEKVRFFFFFLRFLKFG |
Secondary structure | LLLLLLLLLLLLLLLLLLLLLLLEELLLLEEEHHHHHHLLLLLLEEEEEEEEEEEELLLL HHHHHHHHHHHHHHHHHHHHHHHHHLL |
PRMN | - |
PiMo | - |