NONHSAT090407
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT090407 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intronic(S) |
Length |
3504 nt |
Genomic location |
chr3-:71619406..71623608 |
Exon number |
2 |
Exons |
71619406..71621981,71622646..71623608 |
Genome context |
|
Sequence |
000001 AAATGTTAAG GAGGCTTATT TAAATATTCA GGGCTTCAAC TAAAGATCTA ACCACTAAGA TCAAAAGAGT TATTTAAATA 000080
000081 AAAGTTGTTG AGACATTTTT TCATCTGTAT TAATAATGTG GCTTTTGAAG TTACCCGGTA ATAATGTGTC CATAATGCCC 000160 000161 ACACCTAATT TTTAATTTCC ATTTTGGCTT TAGGTGTGGC TTTATTTTAA TAGCTGCCAA AAAGTTGGCA ATTGTTTTTA 000240 000241 CGTTTAGAAC TTCACAGTTT GCTTTTCTGT AGGTTTAGGT AGCATTGGGG ATATTCGTCT AATAAAAACT TTTAAAATTT 000320 000321 CTGTTCTGAC CCTGAGGCAC TTAAAAAAAA CTCTTATGGG CCAAATTTTA AAAGTAGAGT GTCTCTACTA CTGCATAAAG 000400 000401 AATTTCTATA AAAGATGAAA CATGGAGCTG ATTGAAAGAA TAGACGGCGC AATGGTAGAG GACACATAGT TACCACTGTC 000480 000481 ACTGGTAATC TACAGCTTGA TGCGAAGTCA TTCCGCCTTG TTTGTTGAAA TGTTAATCAT TTCATTAAGA AAGGTTAAGT 000560 000561 AATTAACTGA TATTTCATTA GGGAATCAAT GACAGACCTT TTTTTAGTGA TGTATGGTAG ATATTTTCTA ATAGAAAGTT 000640 000641 TGCCCCATTT AATTATTTGG AAAGAAGCTA GTTGATTGAG CCTTGGGAAG GAGGGGTGGG GCATCTTCAG ATAACATCTA 000720 000721 TGTCCATAAG CAACTTTAAA TAATTTTGGA GAAAATGGTC TATTAGAATA GAAAATCGTT CAGTCCCCAG TTTTCTTTTA 000800 000801 TGGGCTCCAT CAGGCATGTT GTTGCAGACC TGCTGTTGTT TTGCATGCCT TCTCTGGGTT TAAGAAGGGT TCAGCTGCTT 000880 000881 AAATGTGTTC ATCTTATTTT CTAAATAATG GCTTTTGTTG CAGTGTGATG CATGTTGACA GTAAACGCGC AGCCGTAACT 000960 000961 TTGGCACAAA AAAGGAACAA AGAGTAAATC AGTGAGCACC CATGTACCTG TAGCCCGGCT TAAGAGAGAA GACGCTGCTG 001040 001041 GTTCAGGTAG GAGAGGCTCC TGGAATATCC CATCCTCATC TTACCTCTGT CCTTCTTTCC TAGAGGTTAC TTTACCACTG 001120 001121 TTCGCAGCTG GGTGGTTTTC ATCTTGTGTA GTTCTTCATA TTTTTAATAT GTATGCATGT ACAGGATTCC TCAAAATACA 001200 001201 GGATTTTGTT TTGCACGTTC AAGGTTTGTT CTGATAGCAT CCTACTATAT ATGTTTTTTA GTAACTTGCT TTTTTAAAAA 001280 001281 ATAAACAACA GTAAAATTCA TCCATGTGGA TACATGTAGC TATAGCTTAT TGATTTTTCC ATGTGAACCT TTTGAAATAC 001360 001361 TGGATATTAA TTCAAGACAA GTTCTTTAAA TTTGAGCCTA AAACCCAGTA GCACTCTGTA CATTGAAAAT TTCAGATTCA 001440 001441 TAAGAAACCA TCAGTCCTGA CTGGAACTTC ATAATTTGTT CATTTGTCTG TGTTTTGGGG GAAAAAACTT TAAAACCTCA 001520 001521 ACCATTTATC AGGGAATTTG ATTAAAAAAA ATAATCTATC AAGTGGCTGA TCTCTTACAT TAAGGGAAAA AACAGGCAAA 001600 001601 GCATTCATTT GAAGGAGCCT AGCCATTTTC TCTTTCTTAT TTAAAGACTT GGCTTGGAAC TTAGCAGTTA CATATGCAGG 001680 001681 GTAGCGAGTT AAAAAGCCAT GTTTAATTAA CAGGCGCTTT ATACTTCTGT ATCCTTGTTA TGATATAGCA CCTTGTTCTT 001760 001761 CAGTGTAGAA AGTGATTTCT GCATATTTTA AAGGACTGGC ATCTTTATGG TAAGAAAGCC ATATAAATAA AGATATACTT 001840 001841 AGATGAAAAT CGGAACATGT TTTTAAAATA GTGTGTGTCT ACTTTCATCT CTGTTATCAA ACTTGCTGCA TAAGCCAGAG 001920 001921 TTGATGCTCT GTGATTATGC TAATGACCAA AAGAATCGAT GATGCGAGAC TAGATGAAAT CAGTGGTATA ATCGGGGAAA 002000 002001 GTTATCAGTT TTTTTGTCAT TAAGTATTAG TGATAAATAA TACACTGTTC ATTTCGAGTG GATAGAACAT ATTTAATTCT 002080 002081 GATGTACAGA GTTTCATTTT AGTCAGGCTC ATTGCTGAGT AAAATGATCA TCTTTTGTAA TTTAAGAGGA AAGAGAAAAG 002160 002161 GCATTTTTGT CAGCCTGGCT AACTGACTTG GGCCATCTAG AAATGTTTAC CTTGACCAGC CAGGGAAGAT TGGAAAAACT 002240 002241 TAATTTTTTT TCCTCCTAGA CAACTTGCTT ATTTGTACTG ACATTTTATT AAGAATATCA GATACTCAGT AAATAGCATA 002320 002321 AATGACTAGA GATGTTAAAC AAAATGAGTA TAAAGGTAGA TAGTGTTTCC CTGAAGAATG GGGAAAATGA TAACAAAGGG 002400 002401 GCAATGTTTG GATAATGCTC TTTTTAAATG ACTAGTCTGC ATTAACCAGG GGCTATTAAA GTCGGTATCA CCCATTAGAC 002480 002481 AGCAGTTTTA ATTTTTTTTA ATTGAGTTTT TCATATCAAA TAAGATCATA CTTAGTAATG GTTTACTTAA AGAGAAGTAA 002560 002561 TACTTGTAAC TTAGAATCTT TTCCTGGGTT ACTAAAACCT TAAGGGAAAA CACTGATTCT ACCTTCCTTG TCAACAAAGC 002640 002641 GTTTCTAACA CAATTCTCTG TAACAGACAT TTCTCTGTGG ATAGAGTTTA GCACTTGTTT TACTACTGTA TGACAGTACC 002720 002721 TGGTGACAAG AGAGAAAATA AAAGAATAAT TAGCAATGTT CTGTAGGACA TGAAAAGTGA TTGAAGTCTA CGAGAGAAGG 002800 002801 AAATCAGATC GATGTTATTT TAAAAAAATG CATCACAAAA ATGATTCTCT TCAAAGCAAA GCCTCCTACC CAGGCTGGGG 002880 002881 CCAGCTGTGC TCTGCCATTT CCCTGCCACA GCCCTGTCCG TCCACGTTGG CTCTTACCAG CAGTACCATC TGCTGCTCCA 002960 002961 GCAGTGGCCT TCTCTATGGT AAGGCAGGCC AATTGGGTCA AATCTTGTGA TATGGCAGAT GTCCACTGAG AGCTAAGATT 003040 003041 GGGCCAGGCT CATTTTTATG TGTGTCCAAA GCCAAGATTT CAACTTGGTG AAAGGCTGTG GAATTTATTT CCCCAAGTGT 003120 003121 TGCCCAAACT CTGTTCTTTT CTTCAACTGC CTCCTTGGGC TGAGATGATT GCTTAATGCT CTTAATTATG CTGGATCCCT 003200 003201 CTGTATTTTC GAACACCTGT GGGTAATTCA GATCATGAGT GGTCACAGAG GCTGGCTCGA CAAACGGCTT CCCTTTCCGA 003280 003281 ATGGGAAAAT CCCAGGGAGC TGGACCATGC ACCGTGTGTC AGGGAGCTGA GTGGAGGCTG AAAGAGGATG GAACACTTCC 003360 003361 CTTGAACTTG AACTGGCATT GTGTTGTGTC CAAGTATCCT TCACCCTTGG ATTGGGGAGA GTCTTACAAT GAATAACTCA 003440 003441 GAAAAAAGTT TTCAAAATAA TCCTAGATTG TAAGATATCT ACGACCATTA TCCATAGCCA TATC |
Predicted Small Protein
Name | NONHSAT090407_smProtein_2840:3028 |
Length | 63 |
Molecular weight | 6672.871 |
Aromaticity | 0.0806451612903 |
Instability index | 78.9822580645 |
Isoelectric point | 9.49774169922 |
Runs | 7 |
Runs residual | 0.0407373271889 |
Runs probability | 0.0403765109647 |
Amino acid sequence | MILFKAKPPTQAGASCALPFPCHSPVRPRWLLPAVPSAAPAVAFSMVRQANWVKSCDMAD VH |
Secondary structure | LEEEELLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLHHHHHHHHHHHHHLHHHHHHHLL LL |
PRMN | LLLLLLLLLLLLLLLLLLLLLLLLLLLLLLHHHHHHHHHHHHHHHHHHLLLLLLLLLLLL LL |
PiMo | iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiTTTTTTTTTTTTTTTTTToooooooooooo oo |