NONHSAT089837

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Annotated Information

Transcriptomic Nomeclature

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Function

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Regulation

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Expression

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Allelic Information and Variation

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Evolution

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Labs working on this lncRNA

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Basic Information

Transcript ID

NONHSAT089837

Source

NONCODE4.0

Same with

,

Classification

antisense

Length

3290 nt

Genomic location

chr3+:50396941..50400230

Exon number

1

Exons

50396941..50400230

Genome context

Sequence
000001 ACAAACAGGG GTGCTGCGCC TGCGCGTCCC CGGCGGCAGC GGGCTGTCCT CTAAGCGCCT GTCTTCCGGC TCCTCTGCAT 000080
000081 GCTGGGATAC GGAGTCCTTG GTTGCAGCCG GGGAAGAGTT GAACAGGGTT CTGGCTAGAA CTACAAGTCC CAGGAGGCCA 000160
000161 TGAGCACGGA CCGGTCCCGT TGTGGTGAGC GCGGGGTGTG CTGGGAGTTG TAGTTCTCAG GGACCGTTTC CGTCGGTTCT 000240
000241 CAGGAGGTGG GAAGGGATGA ATTAGCATCT CTAACCCCTG AAAGCGGCGG TGAGGGTTCG GGAAGCAACA CAGCTCTAGC 000320
000321 CCCCACACTT GCTGAATTCC CTAGGAAGAG TAGCTCTATT TGTGCGTGTA CCTCTGAGCG AGTGTGTCCT TGTTGGCTGG 000400
000401 CGTGTGGGTA GGTGTCACTG TGTGAGAAAC AGAACCTCCG TGGTCTGGTG AATGGGACCT gacccaggct ggaacccttg 000480
000481 ctctgcctcg gaggctgtgt ggcattggtt ggttaagttc ctgaaccttt ttgaaactca gtttcatggg ccataaaatg 000560
000561 tagctgatga catgatcttc ctgtcctaat aatcaaaggg gaaaggggtg taaaatgcca gtccaccctg ggtgctcagc 000640
000641 gagtgctGCA CATGTTGCCT TTTTTTGTTT GTTTTCTCCC ACTTGGAAAA GTTTTTTGTT TGTTATTTCA CGTTGCCCTT 000720
000721 TTTCCAAGTG AGGTGGACCT GGAGCACGAA CCTAGGGCTC CCTCCCGCAT AGGGACGAGG CTGGGCAGCC CTCAGTGACC 000800
000801 CTCCTCCCCA CCAGGGACTT CTGATAACTG CGGAGGATGA GAGGTCTCTC TACAAGCCAG GTCTCTCCAC AAGCCTGGGC 000880
000881 TAGGCCTGTT CTGGTCCCAC TTCACGCCAC AGTGACTTCT GACAGGTTGT GTTCTGTGTC TTTTTTTTTT TTTTGTATAT 000960
000961 GGAGTTACTT TTAAAAAACT GTACATATAg gctgggcacg gtggctcacg cctgtaatcc cagcactttg ggaggctgag 001040
001041 gcgggcagat cacctgaggt cgggagtttg agaccagcct gaccaacatg gataaacctc atctctacta aaaatacaaa 001120
001121 attagccagg tgtggtggca catgcctgta atcccatcta ctcgggatgc tgaggcagga gaatcgcttg aacccgggag 001200
001201 gcggaggttg cggtgagcca agatcatgcc attgcactac agcctgggca acaagagcga aactttgtct caaaacaaaa 001280
001281 caaaaaGCTG TCCATATAAT TAAAATAATT CTATGACAAA GTGCTTTTAT AAAACACAGG ATCCCTTCCT TTCAGCCACT 001360
001361 GATTTCAGTG TGTGCTGATG TGTGCATGGC CTACAGGTTA AAAAGGGTGC TGATGCTTTT TTTCTGGGGT CTGGGTTCCC 001440
001441 ACTGGTTGCC ACATCTGGGt aaggttgcca gttttagcaa atcaaaataa ggatgctcag tcaaatttga attccagata 001520
001521 aacaatgagt aatcttcgag tataatcatg tccccctgcc cccttttttt tttttttttt tttttgagac agggtctagc 001600
001601 tttgtccaag gctggagtgc agtggcacaa tcatagctca ctgccacctc taactcctgg gctgaaggga tcctccagcc 001680
001681 tcagcctcct gattagctgc gactacaggc acacactact gtgcccagct aatttttaaa atttttttat tttgtagaga 001760
001761 catgggcagg ggcggggtgg ccatcctacc caggctgatc tcgaactcgt gagctcaagc gatcctcctg catcagcctc 001840
001841 ccaaagtgtt gggattacag gcgttagcca ctgtgcccag cccccagttt ttcagtatag gtatgtccca cacaatagtt 001920
001921 gaaacacttc catactaaaa actcgttcat gatctgaaat tcaaaatagg gtgttctgta ttttatctta caaccctaTC 002000
002001 CAAGATTGCA CGGTCTCTTG CAGGCCATGG GAGCTGTCTT GGGGGTTGTG GATTAGGCAT TGCTCTGCAG CCGAACCCTG 002080
002081 CAGAGGAGAC AGAAAAAGTC TCCATCTTGG CTGAGGCCTC GAAGCCCCTT CATCTATTTA GCATCCAAGC TCCCCAACCC 002160
002161 TTGGTGGCCA CCTCTTCTCT AAAATctttg ctggttttta gccttctcac ctggggggaa aggctttctc ctcttagttt 002240
002241 gctcatctgt ggtatgggga tacactagta cccaccccag agactgtggc gaggactcag ccaggtcagt gcgcagagag 002320
002321 cAGAGTGTTG GGAGGAGAGA GAGGACTGTG GTGGGAAGGC AGGGACACCT GTGCTCTGGT GGTTACAGGT TATAATTCTC 002400
002401 TCCACATGAG AAGATCGCAA AGGTCACACC TTCTAGGGTG AAAATGAACT AGGGCCTAAG CTTGAGAGGA TTCACAAAAA 002480
002481 TGAAGTTTGG CCTATGGCTC CAGTTTAAGC AGCTGCGGCC TCAAGCTCCT GTGGGCCAGG AGGGAGCCGT TGCTGCACTT 002560
002561 GTGGTCAGGG CTTCCTGGGC CGTAGGGACA CTGGCCAGGT GCTCACTCAT AGCTCCCGGC AGAGGCCCTG TCAGGCCCTG 002640
002641 GTGGTCTGAC CAGACTGCCA GATCCACCTC CCCACTAAAC CAGCATCTCT GATCTGTCTT CTTCCCTCCA GGGTCCTGGC 002720
002721 TTTCAGGCTC TGGGAGGGTG tttgttttgc ttgtattttt tttttttctg agacaagagt ctcgctcggt catccaggct 002800
002801 ggggtgcggt ggcgcaatct tggctcactg caacctccgt ctcctggggt caagcaatta tcctgcctca gcctcctaag 002880
002881 tagctgggat tacaggcgca tgccaccatg cctggctaat ttttttgtat ttttagtaga gacggggttt caccatgttg 002960
002961 gccaggctgg tctcaaactc ctgacctcaa gtgatctgcc cgcctcggcc tcccaaaatg ctagattaca ggcatgagcc 003040
003041 accgcaccca gccTGTCTTG CTTGTTTTTA AAAGACAGCT TTTTGAGATG TTATGAGACA ATGTATGTCA AGGGCCTGGC 003120
003121 ACCTATTATA ACTGGTGGAA GCAAGTGCCA TGCCCTGTGG TTGACAGGGA CCTGGGCTAC CATGGTCTTC ACCCCCTGCA 003200
003201 GAGCACTAAG TGGGACTCTG AGGTCTTGGC CAACTGTCTT CATAGCTACC CAGTCCTCAC CCCCAAGCTG ATACAGTGGA 003280
003281 TGGGAACCAT
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Predicted Small Protein

Name NONHSAT089837_smProtein_1547:1738
Length 64
Molecular weight 6998.138
Aromaticity 0.142857142857
Instability index 63.0095238095
Isoelectric point 9.10015869141
Runs 9
Runs residual 0.00210560414642
Runs probability 0.0356827415652
Amino acid sequence MSPCPLFFFFFFLRQGLALSKAGVQWHNHSSLPPLTPGLKGSSSLSLLISCDYRHTLLCP
ANF
Secondary structure LLLLHHHHHHHHHHHHHHHHHLLLEEELLLLLLLLLLLLLLLLLLEEEEEELLLLLEELL
LLL
PRMN -
PiMo -