NONHSAT089837
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT089837 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
antisense |
Length |
3290 nt |
Genomic location |
chr3+:50396941..50400230 |
Exon number |
1 |
Exons |
50396941..50400230 |
Genome context |
|
Sequence |
000001 ACAAACAGGG GTGCTGCGCC TGCGCGTCCC CGGCGGCAGC GGGCTGTCCT CTAAGCGCCT GTCTTCCGGC TCCTCTGCAT 000080
000081 GCTGGGATAC GGAGTCCTTG GTTGCAGCCG GGGAAGAGTT GAACAGGGTT CTGGCTAGAA CTACAAGTCC CAGGAGGCCA 000160 000161 TGAGCACGGA CCGGTCCCGT TGTGGTGAGC GCGGGGTGTG CTGGGAGTTG TAGTTCTCAG GGACCGTTTC CGTCGGTTCT 000240 000241 CAGGAGGTGG GAAGGGATGA ATTAGCATCT CTAACCCCTG AAAGCGGCGG TGAGGGTTCG GGAAGCAACA CAGCTCTAGC 000320 000321 CCCCACACTT GCTGAATTCC CTAGGAAGAG TAGCTCTATT TGTGCGTGTA CCTCTGAGCG AGTGTGTCCT TGTTGGCTGG 000400 000401 CGTGTGGGTA GGTGTCACTG TGTGAGAAAC AGAACCTCCG TGGTCTGGTG AATGGGACCT gacccaggct ggaacccttg 000480 000481 ctctgcctcg gaggctgtgt ggcattggtt ggttaagttc ctgaaccttt ttgaaactca gtttcatggg ccataaaatg 000560 000561 tagctgatga catgatcttc ctgtcctaat aatcaaaggg gaaaggggtg taaaatgcca gtccaccctg ggtgctcagc 000640 000641 gagtgctGCA CATGTTGCCT TTTTTTGTTT GTTTTCTCCC ACTTGGAAAA GTTTTTTGTT TGTTATTTCA CGTTGCCCTT 000720 000721 TTTCCAAGTG AGGTGGACCT GGAGCACGAA CCTAGGGCTC CCTCCCGCAT AGGGACGAGG CTGGGCAGCC CTCAGTGACC 000800 000801 CTCCTCCCCA CCAGGGACTT CTGATAACTG CGGAGGATGA GAGGTCTCTC TACAAGCCAG GTCTCTCCAC AAGCCTGGGC 000880 000881 TAGGCCTGTT CTGGTCCCAC TTCACGCCAC AGTGACTTCT GACAGGTTGT GTTCTGTGTC TTTTTTTTTT TTTTGTATAT 000960 000961 GGAGTTACTT TTAAAAAACT GTACATATAg gctgggcacg gtggctcacg cctgtaatcc cagcactttg ggaggctgag 001040 001041 gcgggcagat cacctgaggt cgggagtttg agaccagcct gaccaacatg gataaacctc atctctacta aaaatacaaa 001120 001121 attagccagg tgtggtggca catgcctgta atcccatcta ctcgggatgc tgaggcagga gaatcgcttg aacccgggag 001200 001201 gcggaggttg cggtgagcca agatcatgcc attgcactac agcctgggca acaagagcga aactttgtct caaaacaaaa 001280 001281 caaaaaGCTG TCCATATAAT TAAAATAATT CTATGACAAA GTGCTTTTAT AAAACACAGG ATCCCTTCCT TTCAGCCACT 001360 001361 GATTTCAGTG TGTGCTGATG TGTGCATGGC CTACAGGTTA AAAAGGGTGC TGATGCTTTT TTTCTGGGGT CTGGGTTCCC 001440 001441 ACTGGTTGCC ACATCTGGGt aaggttgcca gttttagcaa atcaaaataa ggatgctcag tcaaatttga attccagata 001520 001521 aacaatgagt aatcttcgag tataatcatg tccccctgcc cccttttttt tttttttttt tttttgagac agggtctagc 001600 001601 tttgtccaag gctggagtgc agtggcacaa tcatagctca ctgccacctc taactcctgg gctgaaggga tcctccagcc 001680 001681 tcagcctcct gattagctgc gactacaggc acacactact gtgcccagct aatttttaaa atttttttat tttgtagaga 001760 001761 catgggcagg ggcggggtgg ccatcctacc caggctgatc tcgaactcgt gagctcaagc gatcctcctg catcagcctc 001840 001841 ccaaagtgtt gggattacag gcgttagcca ctgtgcccag cccccagttt ttcagtatag gtatgtccca cacaatagtt 001920 001921 gaaacacttc catactaaaa actcgttcat gatctgaaat tcaaaatagg gtgttctgta ttttatctta caaccctaTC 002000 002001 CAAGATTGCA CGGTCTCTTG CAGGCCATGG GAGCTGTCTT GGGGGTTGTG GATTAGGCAT TGCTCTGCAG CCGAACCCTG 002080 002081 CAGAGGAGAC AGAAAAAGTC TCCATCTTGG CTGAGGCCTC GAAGCCCCTT CATCTATTTA GCATCCAAGC TCCCCAACCC 002160 002161 TTGGTGGCCA CCTCTTCTCT AAAATctttg ctggttttta gccttctcac ctggggggaa aggctttctc ctcttagttt 002240 002241 gctcatctgt ggtatgggga tacactagta cccaccccag agactgtggc gaggactcag ccaggtcagt gcgcagagag 002320 002321 cAGAGTGTTG GGAGGAGAGA GAGGACTGTG GTGGGAAGGC AGGGACACCT GTGCTCTGGT GGTTACAGGT TATAATTCTC 002400 002401 TCCACATGAG AAGATCGCAA AGGTCACACC TTCTAGGGTG AAAATGAACT AGGGCCTAAG CTTGAGAGGA TTCACAAAAA 002480 002481 TGAAGTTTGG CCTATGGCTC CAGTTTAAGC AGCTGCGGCC TCAAGCTCCT GTGGGCCAGG AGGGAGCCGT TGCTGCACTT 002560 002561 GTGGTCAGGG CTTCCTGGGC CGTAGGGACA CTGGCCAGGT GCTCACTCAT AGCTCCCGGC AGAGGCCCTG TCAGGCCCTG 002640 002641 GTGGTCTGAC CAGACTGCCA GATCCACCTC CCCACTAAAC CAGCATCTCT GATCTGTCTT CTTCCCTCCA GGGTCCTGGC 002720 002721 TTTCAGGCTC TGGGAGGGTG tttgttttgc ttgtattttt tttttttctg agacaagagt ctcgctcggt catccaggct 002800 002801 ggggtgcggt ggcgcaatct tggctcactg caacctccgt ctcctggggt caagcaatta tcctgcctca gcctcctaag 002880 002881 tagctgggat tacaggcgca tgccaccatg cctggctaat ttttttgtat ttttagtaga gacggggttt caccatgttg 002960 002961 gccaggctgg tctcaaactc ctgacctcaa gtgatctgcc cgcctcggcc tcccaaaatg ctagattaca ggcatgagcc 003040 003041 accgcaccca gccTGTCTTG CTTGTTTTTA AAAGACAGCT TTTTGAGATG TTATGAGACA ATGTATGTCA AGGGCCTGGC 003120 003121 ACCTATTATA ACTGGTGGAA GCAAGTGCCA TGCCCTGTGG TTGACAGGGA CCTGGGCTAC CATGGTCTTC ACCCCCTGCA 003200 003201 GAGCACTAAG TGGGACTCTG AGGTCTTGGC CAACTGTCTT CATAGCTACC CAGTCCTCAC CCCCAAGCTG ATACAGTGGA 003280 003281 TGGGAACCAT |
Predicted Small Protein
Name | NONHSAT089837_smProtein_1547:1738 |
Length | 64 |
Molecular weight | 6998.138 |
Aromaticity | 0.142857142857 |
Instability index | 63.0095238095 |
Isoelectric point | 9.10015869141 |
Runs | 9 |
Runs residual | 0.00210560414642 |
Runs probability | 0.0356827415652 |
Amino acid sequence | MSPCPLFFFFFFLRQGLALSKAGVQWHNHSSLPPLTPGLKGSSSLSLLISCDYRHTLLCP ANF |
Secondary structure | LLLLHHHHHHHHHHHHHHHHHLLLEEELLLLLLLLLLLLLLLLLLEEEEEELLLLLEELL LLL |
PRMN | - |
PiMo | - |