NONHSAT087919

From LncRNAWiki
Jump to: navigation, search

Please input one-sentence summary here.

Annotated Information

Transcriptomic Nomeclature

Please input transcriptomic nomeclature information here.

Function

Please input function information here.

Regulation

Please input regulation information here.

Expression

Please input expression information here.

Allelic Information and Variation

Please input allelic information and variation information here.

Evolution

Please input evolution information here.

You can also add sub-section(s) at will.

Labs working on this lncRNA

Please input related labs here.

References

Please input cited references here.

Basic Information

Transcript ID

NONHSAT087919

Source

NONCODE4.0

Same with

,

Classification

intergenic

Length

1948 nt

Genomic location

chr3+:10322636..10335133

Exon number

7

Exons

10322636..10322686,10323823..10323918,10325205..10325287,10327432..10327537,10329098..10329165,10329629..10329790,10333752..10335133

Genome context

Sequence
000001 ACATGGAAGT CTCCAAGCCT GTGCCATCCA CCTGCCAAGG AAAAGCACAA GCTCAAGGCT GTAGGAGGAA GAAAAATCTA 000080
000081 GTCCCTGGGG GTACTGATGA ATCAGTTGGA TGGTGGGCGT TGGACTGTGA ATTCCTGATG CCTCTGGGCA GTAGAGCGAG 000160
000161 GGAAGCTGCA ctggctgaga ggctgtggaa ccggatgaaa aagcagcccc tgagtcctgt ggcgttggct CATACAGTTT 000240
000241 GAACATTTAT TCGCCTCCTG AGCTTGTACA ACAGTCGTGG GAGTTGCTGC AGAAGCAAGC GAAAAGCCAG ATGAGCGCTT 000320
000321 CTAAACTTAG AGAGAGGGAG AGCGCCTCAT CTCTTCCATT TTCCAGGTAT TCCTGAGATG ATTTATTGGA GCTCAAAGCT 000400
000401 TTGGGAGAGT TGGGGCCTTC CATTCCCTCC AGTAAATACT TGTTTTTCTT CCACCGCTGA GGCAAATGCG GGGTGGCTGA 000480
000481 TCACCTGGCA GACATCTTAG GAAACAGGAG CACCGGTCTG GGAAACTGCT GGCCTGGCCT AACACCTGGC GCTGTGGTGC 000560
000561 AGGCAAGAGG GCAGCCACTG AGGATTCTTG AGGAGAGAGA Gaccatagaa tgaatgaaag agttggaaag actttaaagc 000640
000641 tctgggaggc tgaatccttt atttcgctgg aagaaaaact gaatgccaag agggcctcac tttccccaaa gctatacagc 000720
000721 catcaggggc aatgctggga ttcccccatg gatctcttga ctcctaatac agtgctcttt ctgatatgcc atctgGCTCC 000800
000801 ATAATGAACA TTGTGTTCCA GGAAAATCAG TCTGCGCTGA ACAGGATGGA ATTGGGGCAG GACGTCCAGT GAGGAGGACA 000880
000881 TTGAGGCAGT AGAGCAGTTG ATTGCCGAAT GACCACCTAC CCTGACTTAA AAGATCAACC TCAGGGAGGA TTGGAGCTTT 000960
000961 CTAGAGTCTC TTGGGACAGC AGAAGCACAG GCCGGGTTGG ACTGAATCTT TAAGTGGACA TGAGGGACAA AGTACCTCCT 001040
001041 GTTGGTAAAC ATCTCACCAC CAACCCACTG TGGTGGCTAA AATCCCACCT TTAGTCCCAG CAACATATGA GCATGTCACC 001120
001121 AGGAGGTCTT CACAGGCCTG TCTGCCACCT GAGTGTAGAC ATCTTTTGGC CCTGGAGCCC AGAGAGGCTG AATGTGGAGA 001200
001201 GGGTGGAGAG AGGTCTGTAG TCCTCAGAGA AGACTTGCAG CTTTTTCAGA GCCACCAACC CATAAAAAAA AAAATCCCCA 001280
001281 AACAGAAAAA TCCTAACTGT GGTGACCAGG TACCTCCTGA GACATGAAGC CTCCACTTAC CTGGACCCTG GAGGCCTCTC 001360
001361 CGGGCACAGC TGCCAATGTT GATCTTAGAT AAGACCACCA GCAAGTAAAC ATCCACTGTG CAAAGCTGTG TTATCTTTGG 001440
001441 GGAACTGAAA TGTCCCCTGG GAGTTGGAAA CTCCCCTAGC CACATACCAC AGAGTTGAGG AAGGAAGAGC TGATGGACGG 001520
001521 AAGAACCATG GCGGGAGGAG TCATCCGGAA GCTACCTCGC TGCCCTGTCA GTTACGGAAC AGAGGAGAGA TGCCGGCTGG 001600
001601 AGGACACAGC AAATTTGAAC CAAGAGGAGC TTGGAGGAAG CCCGAGCGAC CTGGAGGGGA CTGGCTGACC TTCCTCATTC 001680
001681 TTTTCAAGTG TGAATAATAA CCAAGCCCAG TTTGGCAACT CCTTGAGGGT GAGGACGAAG CCCCATTCTC CTTTTTGGAA 001760
001761 CTTGGTGGGG CTCAGGAAGC AGGTTCTCTC CAGTCGGTGG CTTTCCTTTC TGTTGCGGGT CTCTTGAGGG CCTGCCTTCA 001840
001841 TGAAGGCACA TGAGTGACTC ATCATTTGTG AATTAATTGC TATATGTGAA GGGCATCTGA GAACAAATTA TCTTCATAGA 001920
001921 CTTTTCATTA TAATTTTATT TGTACTGA
[back to top]

Predicted Small Protein

Name NONHSAT087919_smProtein_2:241
Length 80
Molecular weight 8690.0347
Aromaticity 0.0506329113924
Instability index 49.3632911392
Isoelectric point 9.56793212891
Runs 11
Runs residual 0.00104040228889
Runs probability 0.0465786642257
Amino acid sequence MEVSKPVPSTCQGKAQAQGCRRKKNLVPGGTDESVGWWALDCEFLMPLGSRAREAALAER
LWNRMKKQPLSPVALAHTV
Secondary structure LLLLLLLLLLHHHHHHHHLLLLLLLLLLLLLLLLHHHHHHLHHHHLLLLLHHHHHHHHHH
HHHHHHHLLLLLLLEEELL
PRMN -
PiMo -