NONHSAT087789
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT087789 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intergenic |
Length |
2606 nt |
Genomic location |
chr3-:9433389..9438342 |
Exon number |
2 |
Exons |
9433389..9433510,9435859..9438342 |
Genome context |
|
Sequence |
000001 GGGGGCGGGC TGCCGGCCGA GACTTCTGGA TGGCGGCGGC CGCGGCTCCG CCCCGGGTTC CCACCGCCTG AAGGGCGAGA 000080
000081 CAAGCCCGAC CTGCTACAGG CACTCGTGGG GGTGGGGGAG GAGCGGGGGT CGGTCCGGCT GGTTTGTGGG TGGGAGGCGC 000160 000161 TTGTTCTCCA AAAACCGGCG CGAGCTGCAA TCCTGAGGGA GCTGCGGTGG AGGAGGTGGA GAGAAGGCCG CACCCTTCTG 000240 000241 GGCAGGGGGA GGGGAGTGCC GCAATACCTT TATGGGAGTT CTCTGCTGCC TCCCGTCTTG TAAGGACCGC CCTGGGCCTG 000320 000321 GAAGAAGCCC TCCCTCCTTT CCTCCTCGCG TGATCTCGTC ATCGCCTCCA TGTCGAGTCG CTTCTCGATT ATGGGCGGGA 000400 000401 TTCTTTTGCC TAGGCTTAAG GGGCTAACTT GGTCCCTGGG CGTTGCCCTG CAGGGGAGTG AGCAGCTGTA AGATTTGAGG 000480 000481 GGCGACTCCG ATTAGTTTAT CTTCCCACGG ACTAGAGTTG GTGTCGAGGT TATTGTAATA AGGGTGGGGT AGGGAAATGG 000560 000561 AGCTTAGTCA TTCACCTGGG GCTGATTTTA TGCAACGAGA CTGCGGATTA TCACTACTTA TCATTTTTGG AGCATTTTTC 000640 000641 TAGAGACAGA CATAAAGCAT GATCACCTGA GTTTTATACC ATTTGAGACC CTTGCTGCAC CACCAAAGTG TAGCATCAGG 000720 000721 TTAAATCTTA ATAGAAAAAT TTTAGCTTTT GCTTGAGAAA CCAGTGCTTC CCTCCCTCAC CCTCTCTCCC CAGGCTCTCT 000800 000801 ACCCCTTTGC ATCCCTACCA GGCATCTTAG CAACTCTCAC TCATACTTGA TCCCATTTTC CATTTGTTGT ACTTGCTCCT 000880 000881 CTAGTATTCA GACATAGCAC TAGCTTTCTC CCTCTCTTGA TCTTGGGTAG CCTGGTGTCT CGCGAAACCA GACAGATTGG 000960 000961 TTCCACCACA AATTAAGGCT TGAGCTGGGG CTTGACTCTT ACCCAGCAGT GCTTTTATTC CTCCCTAGTT CACGTTCTTA 001040 001041 AATGTTTATC TTGATTTTCA TTTTATCCTT TTTCCTTAGC TGGGATTCTG TCCCTGACCG TCTTCACAGT CCAGGTGATC 001120 001121 TTGACTACTG CTTTACAGAG AATTGGATCT GAGGTTAGGC AACATCTCCC TTTTTCTTCC TCTAAATACC TCTCATTTCT 001200 001201 GTTCTTACCA GTTAGTAACT GATCTCAGAT GCCTGTGTGA TAGCTTCCAA ATTGCTGTCT CTGTCTTTAG TGTTATCTTT 001280 001281 TGATCCATCT TACATCTTGT TAGGATGATT GTCCTAAAGG AAGATAGAGC ATGAAAATGA CAGGTGAAAC TCCATTACTG 001360 001361 GCTTGTACTG TTTACAGCAA GTTGTCTAAC CCGCGGGCCG CATGGGACCC AGGACAGCTT TGAATGCGAC CCAACACAAA 001440 001441 TTCGTAAACT TTCTTAAAGT TTTAGGAGTT TTTTTTGCGG GGTGTTTTTT TTGTTGTTGT TGTCTGTTTT TTTTTTTTGC 001520 001521 TCATCAGCTG TCCTTTATAT GTGGCCCAAG ACAGTTCTTG CAGTGTGGCC CAGGGAAGCC GAAAGATTGG ACACCCCTGG 001600 001601 TTTACAGGAT GAATTCTGTT CTCGTGAATG TGATGCATAA GGTCCCTGGA TAGACTTTCC TCAATTTAAC AGCTTTTTCA 001680 001681 TTTTTCACTA TTTTCCACAT ACTACACACA CAAATATGAC CTCTCTCCTG AAGTCACATG GAATGAATTG CAGTTACCCA 001760 001761 AATCATAGAG ACGTCATATA TCTTTGTGGG GTGGTTCTTT TTGGAATGCT ACCCTTGCTG CTTTTAATCC TGCAGATTCA 001840 001841 AATGTCATCT CCCCTTTGGT CATGCCTTCC ATGGTCTGTT GTTCTATGAC CCAAACTGCC CTTTTAAAAA AGCAGTTTTC 001920 001921 TTCTGACTCC TGAGCAGTTT GTACTGCGTG GGTCATAGTA ATTCTGGGGT TGTTGTCATT GCTGATTTAA ATTACCTTAA 002000 002001 CTATTCTGAG CTTTTTGAAG GAATAGTGTC TTGTACTCCT GAGCTCCTAG TATACTCTGA TGTCTAGCCA ACTTTAAGTA 002080 002081 AATGGAGTGA GCGACATGTA AATGTCTTTA TGGTTTGACA TTTTATTAAT CTTGAGCATT GGAAAAGTGG CTGGTATGAC 002160 002161 TAAAGAACTG AATTTTTATT TTTTATCTAA TTTGAATTGC AACTGTGGAC AGTATAGCTG TAGCCCCGGA CTTGTTCTGT 002240 002241 GGATTACAGA ATACGTGGAC ATTGATGGTT TTCTCTTTTT ACTGAGCAGT AAGGAAATAA AAGCTGAAGC TCTCTGGCCC 002320 002321 ATTACATTTC ATTTAACTGC TTGTTTTGTT TTATTTATTA TATATTTAGC TGAAAGCTAA GTCCAACAAA CCATTTTTAA 002400 002401 AGATGTGCCT GCCTTGGACA ACAGTGAAAG CAAGCGTTAA TGAGTTTGGA TTTCAAAAAA AAATGCATAA TGAATTTTAG 002480 002481 GGAGGTGTGG AAACAGGAAG AGAACTAGAA CTGGAAGTAA AGCATTGAAG ATGTGACTGA ATTGCTGCAA TCTCATGATC 002560 002561 AAATTTGAAT GGATGAGGAG TTGCTTTTTA GGGATGAGCA AAGAAA |
Predicted Small Protein
Name | NONHSAT087789_smProtein_1715:1888 |
Length | 58 |
Molecular weight | 6432.7919 |
Aromaticity | 0.0877192982456 |
Instability index | 55.0701754386 |
Isoelectric point | 7.76068115234 |
Runs | 8 |
Runs residual | 0.0135964912281 |
Runs probability | 0.035726903374 |
Amino acid sequence | MTSLLKSHGMNCSYPNHRDVIYLCGVVLFGMLPLLLLILQIQMSSPLWSCLPWSVVL |
Secondary structure | LHHHHHHLLLLLLLLLLLLEEEEEHHHHHHHHHHHHHHHHHHHLLLLLLLLLLEEEL |
PRMN | LLLLLLLLLLLLLLLLLLLLLLLHHHHHHHHHHHHHHHHHHLLLLLLLLLLLLLLLL |
PiMo | iiiiiiiiiiiiiiiiiiiiiiiTTTTTTTTTTTTTTTTTToooooooooooooooo |