NONHSAT087772

From LncRNAWiki
Jump to: navigation, search

Please input one-sentence summary here.

Annotated Information

Transcriptomic Nomeclature

Please input transcriptomic nomeclature information here.

Function

Please input function information here.

Regulation

Please input regulation information here.

Expression

Please input expression information here.

Allelic Information and Variation

Please input allelic information and variation information here.

Evolution

Please input evolution information here.

You can also add sub-section(s) at will.

Labs working on this lncRNA

Please input related labs here.

References

Please input cited references here.

Basic Information

Transcript ID

NONHSAT087772

Source

NONCODE4.0

Same with

,

Classification

intergenic

Length

1834 nt

Genomic location

chr3-:9430537..9439174

Exon number

3

Exons

9430537..9432181,9433389..9433510,9439108..9439174

Genome context

Sequence
000001 GCCGCCGGGG CCGCCTAGAG AAGAGGCTGT GCTTCGGCGC TCCGGCTCCT CAGAGAGCCT CGGCTAGGTG TGGAAACAGG 000080
000081 AAGAGAACTA GAACTGGAAG TAAAGCATTG AAGATGTGAC TGAATTGCTG CAATCTCATG ATCAAATTTG AATGGATGAG 000160
000161 GAGTTGCTTT TTAGGGATGA GCAAAGAAAG TTGCTCCTTG AGGGCAGGAC AGTTCTTATG GCTTTATCCG TTGCGTAAGC 000240
000241 ACAGAGAGGT CTGCGAGGTC AAAACTATTG TCATGATAGC AAGATGCCTG TCTTTTTCAT TTATTCTCAC GGTGTGCAGA 000320
000321 GGCTACATGA TGTGTGATGA CATCCTCATT GATGTTAATG AATGGTGCTA TACTTGAATT TTCTAAGGTG TCATTAGGTA 000400
000401 GGTTTAGGTA TGCATACTTG TTTTTAGAAA TTATTTTTTT CCTTTTTCCC ATTTTTAGAA ATCAACTCAT TTTTTAGGTT 000480
000481 ATGCCTTCAG TAATCTTTGC AACCTCAATA TTGTGTAATG GTTACTTTAA AATACTGTAG TTTTCTTTGT GCCTAAGTAT 000560
000561 AAACATAAGT ACATTTTGTT GTTTTGTTTG CAATAGTGGT TTAAATATTT TCCCAAAATA TCCAAATTTA AAAATTCTAC 000640
000641 AACTTTAGAA TTTAATAAAT TTATTCTAAA ATATTTATAT ATTTTTTCAT TTAAGAATGG ATCGGCTTAA AAAGACTGCT 000720
000721 TCTCATTTAC TTACTGGCTA TACCATCTGT ATACTAATAA AAAACAAGAT TTGATTTGGA AGGACTGACT CAAACTAACG 000800
000801 AAAATATGAA ACCTGTCTTT CTGCTTTGGA GATATTTACC TAATCATGTT CTGCAGTAGA ATAATTTAGT TCTTTTGTCT 000880
000881 TTTTTTGGAG ATGAGGTCTT GCTGTGTTGC CCAGGCTATT CACAGCTGCC ATCATAGTGA ACTACAGCCT GAAACTCCTG 000960
000961 GGTTCAAGAG ATCCTTCTGC CTCAGCCTCC TGAGTAGCTG GAACTATAGG CATGCGCCAC CAAGCCTGGG CTTTTAAAAA 001040
001041 AATTTTAAAA AGAATTTTGA GACAGGATCT TGCCATGTTG CTCAGGCTAG TCTTCAACTC CTAGCCCTGA GTGATCTTGC 001120
001121 TTTGGGCCTC TCAAAATGTT GAGTTAATAG GCGTGAGCCA CCATACCCAG CCAAAAATTT TTTTAGAGAT GGGAATGGAA 001200
001201 TGATCTTGAA TAGTGTTGGT GCCACCTATG TTGTGGCATC ATTTTGAAAC CAATCATTCA GAGTGCTTTT TTTGGTAAGG 001280
001281 CATTATTTTT TAATGCAGGT ATGCCACTAC TGGGAAAAAA AAAAAAACAG GTTTTAAAGC TAGAAATGAA AAGCTACTTA 001360
001361 AGTATCTTAA AGGATAAGTT ACTTTATTAT ACACTAGAAA CATACACAAT AGCTGAAAAA CTTAAAAAAT CTCACACTGC 001440
001441 TGAATGTCTC TGCTGGCTGA AGTGTAAGTA AAAGATCATA GTAGTGCCGC TGTTGAGTGA TAAAGCAACT TGTCATTAAA 001520
001521 GATGTGTGTG CAGACATGGA TTCTGAGTTA ATATCTCATC TGTAGAAGTA TATATTTGTC CCTTGCTTTG GGATTGGTTT 001600
001601 CTGGACAGCA CTCCCCCACC CTTGCTGGCC ATTTGCCAAG GACACCAAAA CCCAAGGATG TTGAATTCCC TTTTATAAAA 001680
001681 TGGCGCTGTA TCTGCATACA ACTTACACAC ATCCTCCCAT ATACTTTAAA TCATTTCCAG ATTTCTTATA CTTCATACAA 001760
001761 TGTGAATGCT ATATAAATAG TTGTTACATT GTGTACTTAT ATTTGTACTA TTGTATTAAA TATTCTCAAA TATT
[back to top]

Predicted Small Protein

Name NONHSAT087772_smProtein_137:376
Length 80
Molecular weight 9447.2784
Aromaticity 0.139240506329
Instability index 49.1810126582
Isoelectric point 8.19940185547
Runs 14
Runs residual 0.0369342812554
Runs probability 0.0731571908043
Amino acid sequence MIKFEWMRSCFLGMSKESCSLRAGQFLWLYPLRKHREVCEVKTIVMIARCLSFSFILTVC
RGYMMCDDILIDVNEWCYT
Secondary structure LLLLHHHHHHHLLLLLHHHHHHHLLEEEEELLLLLLEEEEEEEEEEELLLLLLEEEEEEL
LLEEEEHHHHHHHHHHHLL
PRMN LLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLHHHHHHHHHHHHHHHH
HHHLLLLLLLLLLLLLLLL
PiMo iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiTTTTTTTTTTTTTTTT
TTToooooooooooooooo