NONHSAT087772
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT087772 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intergenic |
Length |
1834 nt |
Genomic location |
chr3-:9430537..9439174 |
Exon number |
3 |
Exons |
9430537..9432181,9433389..9433510,9439108..9439174 |
Genome context |
|
Sequence |
000001 GCCGCCGGGG CCGCCTAGAG AAGAGGCTGT GCTTCGGCGC TCCGGCTCCT CAGAGAGCCT CGGCTAGGTG TGGAAACAGG 000080
000081 AAGAGAACTA GAACTGGAAG TAAAGCATTG AAGATGTGAC TGAATTGCTG CAATCTCATG ATCAAATTTG AATGGATGAG 000160 000161 GAGTTGCTTT TTAGGGATGA GCAAAGAAAG TTGCTCCTTG AGGGCAGGAC AGTTCTTATG GCTTTATCCG TTGCGTAAGC 000240 000241 ACAGAGAGGT CTGCGAGGTC AAAACTATTG TCATGATAGC AAGATGCCTG TCTTTTTCAT TTATTCTCAC GGTGTGCAGA 000320 000321 GGCTACATGA TGTGTGATGA CATCCTCATT GATGTTAATG AATGGTGCTA TACTTGAATT TTCTAAGGTG TCATTAGGTA 000400 000401 GGTTTAGGTA TGCATACTTG TTTTTAGAAA TTATTTTTTT CCTTTTTCCC ATTTTTAGAA ATCAACTCAT TTTTTAGGTT 000480 000481 ATGCCTTCAG TAATCTTTGC AACCTCAATA TTGTGTAATG GTTACTTTAA AATACTGTAG TTTTCTTTGT GCCTAAGTAT 000560 000561 AAACATAAGT ACATTTTGTT GTTTTGTTTG CAATAGTGGT TTAAATATTT TCCCAAAATA TCCAAATTTA AAAATTCTAC 000640 000641 AACTTTAGAA TTTAATAAAT TTATTCTAAA ATATTTATAT ATTTTTTCAT TTAAGAATGG ATCGGCTTAA AAAGACTGCT 000720 000721 TCTCATTTAC TTACTGGCTA TACCATCTGT ATACTAATAA AAAACAAGAT TTGATTTGGA AGGACTGACT CAAACTAACG 000800 000801 AAAATATGAA ACCTGTCTTT CTGCTTTGGA GATATTTACC TAATCATGTT CTGCAGTAGA ATAATTTAGT TCTTTTGTCT 000880 000881 TTTTTTGGAG ATGAGGTCTT GCTGTGTTGC CCAGGCTATT CACAGCTGCC ATCATAGTGA ACTACAGCCT GAAACTCCTG 000960 000961 GGTTCAAGAG ATCCTTCTGC CTCAGCCTCC TGAGTAGCTG GAACTATAGG CATGCGCCAC CAAGCCTGGG CTTTTAAAAA 001040 001041 AATTTTAAAA AGAATTTTGA GACAGGATCT TGCCATGTTG CTCAGGCTAG TCTTCAACTC CTAGCCCTGA GTGATCTTGC 001120 001121 TTTGGGCCTC TCAAAATGTT GAGTTAATAG GCGTGAGCCA CCATACCCAG CCAAAAATTT TTTTAGAGAT GGGAATGGAA 001200 001201 TGATCTTGAA TAGTGTTGGT GCCACCTATG TTGTGGCATC ATTTTGAAAC CAATCATTCA GAGTGCTTTT TTTGGTAAGG 001280 001281 CATTATTTTT TAATGCAGGT ATGCCACTAC TGGGAAAAAA AAAAAAACAG GTTTTAAAGC TAGAAATGAA AAGCTACTTA 001360 001361 AGTATCTTAA AGGATAAGTT ACTTTATTAT ACACTAGAAA CATACACAAT AGCTGAAAAA CTTAAAAAAT CTCACACTGC 001440 001441 TGAATGTCTC TGCTGGCTGA AGTGTAAGTA AAAGATCATA GTAGTGCCGC TGTTGAGTGA TAAAGCAACT TGTCATTAAA 001520 001521 GATGTGTGTG CAGACATGGA TTCTGAGTTA ATATCTCATC TGTAGAAGTA TATATTTGTC CCTTGCTTTG GGATTGGTTT 001600 001601 CTGGACAGCA CTCCCCCACC CTTGCTGGCC ATTTGCCAAG GACACCAAAA CCCAAGGATG TTGAATTCCC TTTTATAAAA 001680 001681 TGGCGCTGTA TCTGCATACA ACTTACACAC ATCCTCCCAT ATACTTTAAA TCATTTCCAG ATTTCTTATA CTTCATACAA 001760 001761 TGTGAATGCT ATATAAATAG TTGTTACATT GTGTACTTAT ATTTGTACTA TTGTATTAAA TATTCTCAAA TATT |
Predicted Small Protein
Name | NONHSAT087772_smProtein_137:376 |
Length | 80 |
Molecular weight | 9447.2784 |
Aromaticity | 0.139240506329 |
Instability index | 49.1810126582 |
Isoelectric point | 8.19940185547 |
Runs | 14 |
Runs residual | 0.0369342812554 |
Runs probability | 0.0731571908043 |
Amino acid sequence | MIKFEWMRSCFLGMSKESCSLRAGQFLWLYPLRKHREVCEVKTIVMIARCLSFSFILTVC RGYMMCDDILIDVNEWCYT |
Secondary structure | LLLLHHHHHHHLLLLLHHHHHHHLLEEEEELLLLLLEEEEEEEEEEELLLLLLEEEEEEL LLEEEEHHHHHHHHHHHLL |
PRMN | LLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLHHHHHHHHHHHHHHHH HHHLLLLLLLLLLLLLLLL |
PiMo | iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiTTTTTTTTTTTTTTTT TTToooooooooooooooo |