NONHSAT087454
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT087454 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intergenic |
Length |
2933 nt |
Genomic location |
chr22-:50602498..50605670 |
Exon number |
3 |
Exons |
50602498..50604475,50604596..50604619,50604740..50605670 |
Genome context |
|
Sequence |
000001 ctgacctcat gatctgccca cctcagcctc ccaaagtgct gggattacag gcatgagcca ccacacccag cAAtttttac 000080
000081 tattatcttt tgagacaagg tctcactctg ttgcccaacc tggagtgcag cggtgggatc ttggcttact gcatcctcca 000160 000161 tctcctgggc tcaagggatc ctcccacctc agcctcctga gtagctggga ctgcagacat gcaccaccac acctggctaa 000240 000241 tttttttgag agatggggtt tcgccatgtt gcctaggttg gtctcgaatt cctgggctca agtgatcctc ctgcctcagc 000320 000321 ctcccaaagt gttgggatta caggcataag ccactgcacc tggccttaaa atttttttat ctgtagaaac ggggtctcac 000400 000401 tatattgccc aggatggtct caaactcctg atccccccac ccccacccaa cccagccttg gcctcccaca gtgctgggat 000480 000481 tgcaggcatg ggATTACAGG TGTGAGCCAC GCTGGGACTG CAGGCATGAG CCATGCTGGG ATTGCAGGCG TGAGCCACGC 000560 000561 TGGGATTGCA GGCGTGAGCC ACGCTGGGAT TGCAGGCGTG AGCCACGCTG GGATTGCAGG TGTGAGCCAC GCTGGGATTG 000640 000641 CAGGCTTGAG CCACGCTGGG ATTGGAGACG TGGGCCACGC TGGGATTGGA GACGTGGGCC ACGCTGGGAT TGGAGACGTG 000720 000721 GGCCACGCTG GGACTGGAGA CGTGGGCCAC GCTGGGATTG CAGGCTTGAG CCACGCTGGG ACTGGAGATG TGGGCCACGC 000800 000801 TGGGACTGCA GGCGTGGGCC ACGCTGGGAC TGCAGGCGTG GGCCACGCTG GGACTGCAGG CGTGAGCCAC GCTGGGATTG 000880 000881 CAGGCGTGGG CCACGCTGGG ATTGCAGGCT TGAGCCACGC TGGGATTGCA GGCTTGAGCC ACGCTGGGAT TGCAGGCTTG 000960 000961 AGCCACGCTG GGATTGCAGG CGTGAGCCAC GCTGGGATTG CAGGCGTGGG CCACGCTGGG ATTGCAGGCT TGAGCCACGC 001040 001041 TGGGATTGGA GACGTGGGCC ATGCTGGGAT TGCAGGAGCC ATGCTGGGAT TGCAGGCGTG GGCCACGCTG GGATTGCAGG 001120 001121 CTTGGGCCAC GCTGGGACTG GAGACGTGGA CCATGCTGGG ATTGCAGGCG TGAGCCACGC TGGGACTGCA GGCTTGGGCC 001200 001201 ACTGCACCTA CTGCATTTGT TTTGCATGTT ACGCCCCTGC CTGGGGCAGC ATCTGGGCCA CAGCACCTTT TCAGTGAACA 001280 001281 ACGATGGTTA TGAGTGGGTG TGATCTTGCC TGCCTGTTGA GCACCACTGG CCAGTCACTG TCTCGCAGAG GAAGCGGTGG 001360 001361 GAGCTTGACA AGAAGAACGC CTGTGGCAGA GCCAGGGCCT GGACTCAAAA CTCGGCAACT TGGCTGCCAT CCTCATTCCC 001440 001441 GGTGAGTGGA ACGGTGAGCA AAGGTCCATG ATGACACCCT GGCCGCCCAG CCTGTTACCC TCCTCAGGAG GATGTGTGGC 001520 001521 AGGAGTGAAG GGTCCACCCC TGCGGTCTTC ACACTCCAGT GGCCCAGACT GGAGGACAGT CTTCCCAAAT CCCGTATTAT 001600 001601 GGGAGCAGCT GCTTCTTTCt cttggtgata cattaacatg agatttcaac acatggaagg atcttgaaga cgatgcgtgc 001680 001681 tgtgcaaagc ttgtattccc atctctctct ttaagcgaac aagctttctg agcttctata tccatgaaga tgaaaaacag 001760 001761 gaaaaaaaac tgacaacctg tctcatttcc gccctaagta atatcttccc atgatgacat taactatttg caaataagcc 001840 001841 ccatacggat aataatgcat ttctggccag gtgtggtggc tcacgcctat aatcccagca ctttgggagg ctgaggtggg 001920 001921 cagatcactt gaggtcagga gttcaagacc agcctggcca acatgatgaa accacgtctc gactaaaaat acaaaaatta 002000 002001 gccaggcatg gtggcatatg cctgtaatcc cagctactca ggaggctgag gcaggggaat cgcttgaatc caggaggcgg 002080 002081 aggttgcagt gagccaagat tgcaccactg ccctccagcc tgggcgacag aatgaaactc catctcaaaa aaaaaaaagc 002160 002161 atttctagct caattttatt tttgtttatt atgaaaattg gaaatgtatg cgtatcattt tgattgggta tttataataa 002240 002241 tcgtaagaat aacaatcGGC CAGATTGTTC CCATGTTAAG CCTCAGTGCT TGTATTTTGT CAGGGTGCGC TGAGACTGGT 002320 002321 GTTTGGTAGG GACAGGCCAG ACCATGCCAC AGTAATAGAC GTCAACAACA GCCCAGGTTG TTTGGCCCCA CACACTGCTC 002400 002401 ACAGGGAGAC TGGGGGCTCT GTCCCGCCAT CCTCAGCCTG ACACGTGGCG GCCCTCGCCC CCGGTGTCCG GTGGGGAGTG 002480 002481 GGGGGTGAGC TGCCCTCTGC CTTCAGAGCC TTCGCATCAG CGATGTCACT GGCTTTACAC ACCTGTGGTG GTGAGGGAGG 002560 002561 TGGGGGTGAA ATCCCGTTCT GTGCCCAGGA GAGGAACAGA AAATATTTGT GATGCCCACA Cctttcaaac ctaacacatt 002640 002641 ttgcattagg atacaaatat gggggggagt ggaatagaaa tatgagttca aggaaaagaa gaaataaact ttctagctgt 002720 002721 gaaagaacag cttgctggtg tcctctaagt ggatgatggt atcaaactgt aatggcattt tttgttgcac tggatacact 002800 002801 gaaaaggaaa atggcaagat ttgggccggg cgtggtggct catgcctgta accccagcac tttgggaggc cgaggcaggt 002880 002881 ggatcaccag gtcaggagat ggagaccatc ctggctaaca cggtgaaacc ccg |
Predicted Small Protein
Name | NONHSAT087454_smProtein_1283:1444 |
Length | 54 |
Molecular weight | 5522.3137 |
Aromaticity | 0.0 |
Instability index | 84.8660377358 |
Isoelectric point | 10.6427612305 |
Runs | 8 |
Runs residual | 0.00931891394386 |
Runs probability | 0.0459503621269 |
Amino acid sequence | MVMSGCDLACLLSTTGQSLSRRGSGGSLTRRTPVAEPGPGLKTRQLGCHPHSR |
Secondary structure | LLLLLHHHHEEELLLLLLLLLLLLLLLEEELLLLLLLLLLLLLLEELLLLLLL |
PRMN | - |
PiMo | - |