NONHSAT087010
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT087010 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
sense |
Length |
1309 nt |
Genomic location |
chr22+:42394797..42399467 |
Exon number |
4 |
Exons |
42394797..42394884,42397104..42397341,42397525..42397703,42398664..42399467 |
Genome context |
|
Sequence |
000001 CGGGGCGGCA GGAGGCCCGA AGCAAGATGG CGGTGAATCA GAGCCACACC GAGAACCGCC GCGGAGCCCT CATCCCTAAC 000080
000081 GGTGAAAGAC AAGCACAAAA GCACCACCCA TGCCTCTGAG AACACTGGAC CATGCACCCT TGAAAACAGC TTTGCTTCCT 000160 000161 TCATCATGAG TAATCTTCCT CCAGCAGTCA AATGTGCCTG TGTACATGAT GTCAGTTCCT TTGCATCCTG ACTGCATCAT 000240 000241 CATGTAGCAG CAAATGGTGT TAAATGAATA GGAAGTCAAC CCAGCAACGG CAGTGACAGT CTGTGCATCA TCCAACTGAT 000320 000321 GACAATCTCC AGCTTTGCCC ACATCAGCTG CTACACGAGT ATGGGCAAAA TCAAGAGGGT ACACAAAACA CAAGGATGTG 000400 000401 GCCCCAGTGG CACCGCCTGA TGCCAGATTC CCTGCAAAGT AGCGCCAAAA CTGGGATCTC TTGTCCACAC CATCCAGGAA 000480 000481 GATCTGCTTG TATTTATCTT TGAAGgtggg aaaacaaaaa gaagtcattt gcttaaagcg catgtgggag agcttggatt 000560 000561 tggaTTTGAA CTTAGGTACT GTGCATAAAC TCCTGTACTC CAGCTGTCCC TCTAGAAAGA AAAGGACTCT TTCTCTGTTT 000640 000641 TCTTCTCACC AAAGAAGATC CTATTAGTAC CCTAGCTTCC TGGATAGAAA CTACTTTAAA GAACCAGAGA TAgtggtgca 000720 000721 catctgtagt cccacctatt cgagaggcta aggtgggagg atcacttgag gccaggagtt caagaccacg ctgagcaaaa 000800 000801 tagtgggacc tcatctcaca gaataaaatt taagaaaaga aaaaaaagaa actatagcca ggcatggtgg cacatgcctg 000880 000881 taatcccagc tgcttgggag actgaggcag gagaatcgct tgaacccaag gaggcagagg ttacagtgaa cagagatcac 000960 000961 gccattgcac tccagcctgg gcaacaagag tgaaactcca tctcaaaaaa aaaaaaaaaG TGCCAGCTTA TGAGGTAATT 001040 001041 ACATTGGTTC TCTCCAGAGG GGTAACCTGC CAAGAAGAGA TGCTATAGAT GTTACTCTTA TACTGTAAAA CATTGTGAAA 001120 001121 TCAGATTGCT TAAAAATGAT GTATTACAAA GTTATGGAAA AAAGCAGTTG TGACTATGGA AGCCCAAGGC TTATATCCTA 001200 001201 GCTCTGTCTT ACACTAAATG TGGGTACAGT GTTTCCACTT TTTGTAAAAT GGGAGCTAAT ATCCTCCAAC CTGTGTGCCT 001280 001281 GACATGGTGA TTAAAAGGAT TAATCGAAA |
Predicted Small Protein
Name | NONHSAT087010_smProtein_395:502 |
Length | 36 |
Molecular weight | 3992.5911 |
Aromaticity | 0.0857142857143 |
Instability index | 99.5085714286 |
Isoelectric point | 8.88787841797 |
Runs | 7 |
Runs residual | 0.0188861985472 |
Runs probability | 0.0147374265021 |
Amino acid sequence | MWPQWHRLMPDSLQSSAKTGISCPHHPGRSACIYL |
Secondary structure | LLLLHHHLLLLHHHHLLLLLLLLLLLLLLLEEEEL |
PRMN | - |
PiMo | - |