NONHSAT087010

From LncRNAWiki
Jump to: navigation, search

Please input one-sentence summary here.

Annotated Information

Transcriptomic Nomeclature

Please input transcriptomic nomeclature information here.

Function

Please input function information here.

Regulation

Please input regulation information here.

Expression

Please input expression information here.

Allelic Information and Variation

Please input allelic information and variation information here.

Evolution

Please input evolution information here.

You can also add sub-section(s) at will.

Labs working on this lncRNA

Please input related labs here.

References

Please input cited references here.

Basic Information

Transcript ID

NONHSAT087010

Source

NONCODE4.0

Same with

,

Classification

sense

Length

1309 nt

Genomic location

chr22+:42394797..42399467

Exon number

4

Exons

42394797..42394884,42397104..42397341,42397525..42397703,42398664..42399467

Genome context

Sequence
000001 CGGGGCGGCA GGAGGCCCGA AGCAAGATGG CGGTGAATCA GAGCCACACC GAGAACCGCC GCGGAGCCCT CATCCCTAAC 000080
000081 GGTGAAAGAC AAGCACAAAA GCACCACCCA TGCCTCTGAG AACACTGGAC CATGCACCCT TGAAAACAGC TTTGCTTCCT 000160
000161 TCATCATGAG TAATCTTCCT CCAGCAGTCA AATGTGCCTG TGTACATGAT GTCAGTTCCT TTGCATCCTG ACTGCATCAT 000240
000241 CATGTAGCAG CAAATGGTGT TAAATGAATA GGAAGTCAAC CCAGCAACGG CAGTGACAGT CTGTGCATCA TCCAACTGAT 000320
000321 GACAATCTCC AGCTTTGCCC ACATCAGCTG CTACACGAGT ATGGGCAAAA TCAAGAGGGT ACACAAAACA CAAGGATGTG 000400
000401 GCCCCAGTGG CACCGCCTGA TGCCAGATTC CCTGCAAAGT AGCGCCAAAA CTGGGATCTC TTGTCCACAC CATCCAGGAA 000480
000481 GATCTGCTTG TATTTATCTT TGAAGgtggg aaaacaaaaa gaagtcattt gcttaaagcg catgtgggag agcttggatt 000560
000561 tggaTTTGAA CTTAGGTACT GTGCATAAAC TCCTGTACTC CAGCTGTCCC TCTAGAAAGA AAAGGACTCT TTCTCTGTTT 000640
000641 TCTTCTCACC AAAGAAGATC CTATTAGTAC CCTAGCTTCC TGGATAGAAA CTACTTTAAA GAACCAGAGA TAgtggtgca 000720
000721 catctgtagt cccacctatt cgagaggcta aggtgggagg atcacttgag gccaggagtt caagaccacg ctgagcaaaa 000800
000801 tagtgggacc tcatctcaca gaataaaatt taagaaaaga aaaaaaagaa actatagcca ggcatggtgg cacatgcctg 000880
000881 taatcccagc tgcttgggag actgaggcag gagaatcgct tgaacccaag gaggcagagg ttacagtgaa cagagatcac 000960
000961 gccattgcac tccagcctgg gcaacaagag tgaaactcca tctcaaaaaa aaaaaaaaaG TGCCAGCTTA TGAGGTAATT 001040
001041 ACATTGGTTC TCTCCAGAGG GGTAACCTGC CAAGAAGAGA TGCTATAGAT GTTACTCTTA TACTGTAAAA CATTGTGAAA 001120
001121 TCAGATTGCT TAAAAATGAT GTATTACAAA GTTATGGAAA AAAGCAGTTG TGACTATGGA AGCCCAAGGC TTATATCCTA 001200
001201 GCTCTGTCTT ACACTAAATG TGGGTACAGT GTTTCCACTT TTTGTAAAAT GGGAGCTAAT ATCCTCCAAC CTGTGTGCCT 001280
001281 GACATGGTGA TTAAAAGGAT TAATCGAAA
[back to top]

Predicted Small Protein

Name NONHSAT087010_smProtein_395:502
Length 36
Molecular weight 3992.5911
Aromaticity 0.0857142857143
Instability index 99.5085714286
Isoelectric point 8.88787841797
Runs 7
Runs residual 0.0188861985472
Runs probability 0.0147374265021
Amino acid sequence MWPQWHRLMPDSLQSSAKTGISCPHHPGRSACIYL
Secondary structure LLLLHHHLLLLHHHHLLLLLLLLLLLLLLLEEEEL
PRMN -
PiMo -