NONHSAT086637

From LncRNAWiki
Jump to: navigation, search

Please input one-sentence summary here.

Annotated Information

Transcriptomic Nomeclature

Please input transcriptomic nomeclature information here.

Function

Please input function information here.

Regulation

Please input regulation information here.

Expression

Please input expression information here.

Allelic Information and Variation

Please input allelic information and variation information here.

Evolution

Please input evolution information here.

You can also add sub-section(s) at will.

Labs working on this lncRNA

Please input related labs here.

References

Please input cited references here.

Basic Information

Transcript ID

NONHSAT086637

Source

NONCODE4.0

Same with

,

Classification

intergenic

Length

1864 nt

Genomic location

chr22-:38243456..38245319

Exon number

1

Exons

38243456..38245319

Genome context

Sequence
000001 GCCATATCCA GAAGGAAGAG GAGCCGCGTT CCgtggctca cacctgtaac cccaccagtt tgggaggccg aggcgggcgg 000080
000081 atcacctgag gctgaggccg ggggtttgag accagcctga ccaatatgga gaaaccccgt ctctactaaa aatacaaaat 000160
000161 tagccgggag tggtggcgca tgcctgtaat tccagctact cgggaggctg aggcaggaga gtcgcttgaa cccgggaggc 000240
000241 ggaggttgcg gtgagccgag atcgcgccat tgcactctag cctgggcaac aagagggaaa actccgtcta aaaagaataa 000320
000321 GAGGGTTACA AGTAGCCTGA ATTTTCCTCT CTTCAAATAG GGACTTCTCA AAGAAGGTGA ATCTATAATA GTGGTGTAGA 000400
000401 TTCAGATATA AGGACACGTA TTTGGCGTAA AGGAGAGGCA AAGTTAGAGG AACCAGAAAG AATGCTACAC AAAAGATGGC 000480
000481 CGGCTTCTCG CGTGAAGGAA GATTCGGATA CGGGGGCCTG ATGGATTTAG TTGTAGGCGG TTTGCCTGCA GCGAGTAAAT 000560
000561 TATTCAAACG TTCGGACTTC ACAAGACTAA ACTTACTGGG GATAAAAATT GAGATTTggc cgggcgcgat ggctcacgcc 000640
000641 tgtaatccct acactttggg aggccgaggc gggtggatga tctgagatca ggagttcgag accagcctgg ccgaaatggc 000720
000721 gaaaccccgt ctctattaaa aatacaaaaa ttagccggga gtggtagcgt ccgcctgtaa tcccagctac tcaggaggct 000800
000801 gaagcaggag aatcggtgga acctgagagg cagaggctgt agtgagccga gatcgcgcca ctgcactcca gcctgggcga 000880
000881 cagagcaaga ctccgtctaa aaaaaaaaag aaaaaaaaaa aTTGAGATTT GGTCCCATGC AGTAAGAGGG AATGGAGAAC 000960
000961 AGGAGCCACC CAACTTTGGA CATTAAAGTT GGAGCAGGCA AAGATGAGGC CAGCTGTGTC GCGAAGCCTG GGACATGGGC 001040
001041 AGCTCTTGAG TACACCGGGT TCGAGGCCAG GGGAAACCCT CAAGGTAGAG ATGGGGTTAT AAAGCAAACC AATAAAAACC 001120
001121 GGTGTATGAG TCAAGGAGAG GCCTTAGTTT AGCCATCTGC CCATACACAA CACCTAGTgg aaatccgagt tccagtccct 001200
001201 actccgccac tgatttgctg tgtgaccAGG ACTCTCTGGG TCCCTTTgtc acgccgccct ccttgctttt cccactgagg 001280
001281 cacgctccac ctctgggatt ttgcactcac tgttatccaa gtctagaatc gaatgcagtg gcacccccac tcccattccc 001360
001361 ttccccatcg gtatctgcat ggcaccttca ggtgtctgct ctgatgccat ccactcaaca tcctattgag aattgcaatg 001440
001441 cccagcccca actccctatg ctgcgttctt gttttgtgtt tcttccttgt gctgtcacca GAGGTGACAC AAATTTGGAA 001520
001521 ATAATGGAGC TTAAGCTTTA CCGACCCTCG ATTTGGTTCA GGACCTTCCC TGAACCAAGG AAGAGTCACA gtctcttcct 001600
001601 tggttcaggg agggtcccca acaatgtcct catggtcctt tgcttttgta aaatttgtga aatattttta ttgctgaaac 001680
001681 cacctttgca aaaattgtaa cagtgagaaa ataatgacag tgaaagagat ctgatctaac caaccctcat cttccattta 001760
001761 atcttcagac tgcccttaat cattcctggc tcgaaccgag ctaactttgg gagacattta gtttctagtt taaataataa 001840
001841 cccttctccg aggcctggca cagt
[back to top]

Predicted Small Protein

Name NONHSAT086637_smProtein_1403:1699
Length 99
Molecular weight 11304.4612
Aromaticity 0.0918367346939
Instability index 45.2571428571
Isoelectric point 9.09735107422
Runs 16
Runs residual 0.0242227732214
Runs probability 0.0363562091503
Amino acid sequence MPSTQHPIENCNAQPQLPMLRSCFVFLPCAVTRGDTNLEIMELKLYRPSIWFRTFPEPRK
SHSLFLGSGRVPNNVLMVLCFCKICEIFLLLKPPLQKL
Secondary structure LLLLLLLLLLLLLLLLLLHHHLEEEELLLEEELLLLLHHHHHHHHLLLLEEEELLLLLLL
LLEEELLLLLLLLLLEEEHHHHHHHHHHHHLLLLLLLL
PRMN LLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLL
LLLLLLLLLLLLLHHHHHHHHHHHHHHHHHHLLLLLLL
PiMo oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
oooooooooooooTTTTTTTTTTTTTTTTTTiiiiiii