NONHSAT084532
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT084532 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intergenic |
Length |
8467 nt |
Genomic location |
chr22+:27063123..27072436 |
Exon number |
2 |
Exons |
27063123..27063273,27064121..27072436 |
Genome context |
|
Sequence |
000001 GAatttagca agtcccttca ttcagcaccg gcatggacca agcaacttct ctgagccaga tgctggggac gcagaggtga 000080
000081 acccagagac atgatcccat ctgctcAGAT CTTCATGTCA GAACACGCTT TATTACAGTC TCGGCAAGGG GGTGGCTCCA 000160 000161 TCTGGGCCGC ATCTCCAGGA CTCCTGGCCT GGACTTCTCT TTGGACCTCG GGTGACCTTG GATTCTGGCC ACAGTGACTT 000240 000241 AGCGGTCAGA CTCCGGTGGT TTTCTAGCCC GCTGGGTGAC TCCCTGAAGA TCTCATCCTC TTCACACCTG TTGGGATGGA 000320 000321 GCCTCCCATG GATAGGAACT CTTCCTGGTT GATGCTCAGC AGATGACTGA TCTGGCTCTG GAGGACAGCT CCAGGGGTAT 000400 000401 GAGGGAGGCC TGGCAGCCCA CTACTCCCTC CTCACCTGCT CGGGCCCTGC CTGCTGGGCC CTATTGTCTG GGTCTGGGGG 000480 000481 CCCTTTCCTG CCCCATGTGA ACTTGATTCC TCCTCGCGTT TCTGCCGGTG ACCAGACAGA GCCTGGCCTG GGCCAAGTCC 000560 000561 CCACTGACCA CACTTTCCCC AAGGCTGGGT CTCAAAGGAC CCTACAGGAT GGGGACAGGA ACAAGGATGG GAGTCGGGGA 000640 000641 GGGGCTGTCA GGCAGAGGGC AGATGCAGCT CCTCGGGTGC CGCTGGCTGG AGTCCTTTGT CTCCATTTGC TCAGTGCGTA 000720 000721 ATTGTCATTT TGTGGGGGAC TTCCTTGGTG GGGCTTTTCC ATGCTTTTCC TCTCCCTGAT GGTTACAAAG AGGAGACAGT 000800 000801 CAGGATCTGG GAGGAGCTGG AGCCTTCCCC CTGTGCTGTT GAACTCTGGG AGGGGCAGCC AGAGGGGCTG AGAGTGCACC 000880 000881 ATCCTGAAAA GAGAGGGTCT TTAAGAGATA AGATTTAGGC TAGGGAAATT CACTAGAAAG AGACAGGTGG CCCTGGGTTT 000960 000961 TTTTTCCTGC CATCCAAAGG GAACCAGTCT TACCCAAAGG CTTAAGGGGT CACCTTAGCC CAGTCTCAGG ACACTCTTCT 001040 001041 CCAATCAGAT CGCTGCTTCT AGTTGCACTG CTCCTGGATT CTGTTCTTGG GGAACAGAAG GTGGCAGGAC AGGCCCCACA 001120 001121 ATCTGCAATT CCAGCTCCCT CCAGAGGAGA CAGTCCCAGC GTTTGCAAGA GAGCAGCTTG TGGCCTCCCT TAGGCAAGTT 001200 001201 TAAAAGCCAG ATGTCCTTTT TCCCAGAATG CGGAGTGGTG TGTACtattc atcagcttgg gctgccacag caccatgcca 001280 001281 gactggatgg cttaaacatc aggaatttat tttctgccag ttctggaggc tggaaagtcc agatcaaggt gttaagactt 001360 001361 ggtttctggt gaggcctctc tccttggctt gcaggtggca ccttctcact atgtcctcac atggcctttt ctctgtggag 001440 001441 agggacagag agcatgagca ggctctggtg tctcctcctc ttcttataaa gacactaata tcaccatatt agggcttaaa 001520 001521 cctatgacct catttaacct taacccctta aaggtcccat ctccaaaaac agtcacatag caggctactg cttcaacata 001600 001601 tgcatttggg ggaggggaca ccattcagtt cttaacaGGG TGGTCACCGC AAACATGGAA AGTCAGAGCC TTCTCCCCTT 001680 001681 CAGAATTCCC GCCCCCACCC AGGGATGGGG AGGAGGAGCA GAGAGGTATG GGAAGCAGAC ACGGAGAGTG GCAGGTACCA 001760 001761 TGCTGGGGTG GCTCAGGAGT GCTTCGGAGG ACATATGGAA CTGGCAGGGC TCAGTGCAGG GAGGCGGAGG CCCTGGGAGA 001840 001841 GCCGTGTCCT GAGAAGGGCC TGGGCTACAa ccctgggcaa gttacttcac ctctgagcct ccgatgctct gtgaaatgga 001920 001921 aggaatgtgc ttgcctgtca ggtgcaggga gaattcagtg agattgtgtg cctagcacag tgcctgactc ccagtaggtg 002000 002001 ctcagcaaat gCTCCCATCC ATCTGGGAGT ATAGACTTAG GGTTTATCTA TTTTTTTTTT TTTTTGGCTC TCTGGACTTT 002080 002081 AAAACTCAGC ATCTTCTGAA CCAGAGGCAT TTCTGATTAG CCCTTCCCTA CCTATTTTCC TAGTATCACT CTTTAATCAG 002160 002161 CTTGGGGAGG TGGCAGCATT TCATGGCCTC CGTAGTAACT CACAATGCTT CCTGGGGTAT TTAAATTCTA CTCTCTCATC 002240 002241 AGCactgagc acctactttg ggccctttcc cgtgctagcc atttggggga aatataggtg aaGAGTGGCT GGGGTTTGAA 002320 002321 CCTTTAGGAT TTCACAGCCA TGCTGGATGG GATAAAACCA GCTCACATGG AGAATCAGAG AATGGGACAG TGCCACAAAA 002400 002401 CAGTCTACTG AGGCACAAGT TCTGAGTGCC TGGGAAGTGG TAGAGAGACC CCAGAGAGGG CTGCTGCAGT CTGGAACAGC 002480 002481 TTCCTAGCAA GCTGTACCAA ACAGGGCCTT GAAGGATGAG AAAGATCTGG CTGAGATGAT ACCCGACCCT CTAGGGAAAT 002560 002561 TCTTAAAGTA ACTTCTAGGA AATGTCATTG CTCCTTaaaa aaaaaaaaaa aaaaaaaaaa GCAGGTTCTA ATTCAAATTC 002640 002641 CGCTGCACTA CTGAAGtagt gcaggactta tcagaacctt taaaatgcta atggcaattt caaatactca gggacagggc 002720 002721 ataggatgaa gtgttccttg acttttatgg ccgtagaatc tttttctcat ggaacatcGT TTAGAACTGT GGGAGATGCT 002800 002801 AGGCTGGGGT TTCTATGGGA AAAGTACAGC AGTGATAGAA GATGGCATAA TTAGGGTACA CTTAGGTGCT TTGTAGCATT 002880 002881 GGCTGAAAAG GAAGCAGACC GGGTGGGCGT GGGGGAGTCT CAACTTGGTT CCAGGAGCCA GGCCAGCTTG ATGCGTTTTT 002960 002961 TTTTTTTCTA ATGGTGGGAG GGCAGGCCAA TAGTTGGAGA AACTAGAGGC CTGACAGTCG GTGATGGAAG AGATGTCTAC 003040 003041 TAAGCACGGT TGTCAGATCT TTTGCGGAGA GATGCGGGTG TGCGTGTGTC TGTCAGAGTG TAACAGGATC CAGCCCTCTG 003120 003121 GGAAGGGGCT GACCAGAACC AGGCAGGGGG TTTCTGTCTA GGACAAGTAG GGTCCATTTT CAGGGGAGCT GAAATATTTG 003200 003201 CAGGGGGTGC TCTGAGACCC ACAGCCAATA AATAGGGAAG CAACATGCTT TTGGGCAGGG TCCATGTGGT TAGGGTTGAT 003280 003281 TTTGATGGGG CTGGGGGGCT TAGAGTTAGA CCCCCTGCCC TGGTCAGGCC CCACTCCCTG GCTGGTGGGG GCGGGAGGCC 003360 003361 TCTGAAGCTG CAGCTGGAGG GGCCGGGGCA GTGTTGCATG GTGTGATTAA CCTACTAACC CAGGGCTCAG CCGGGACGCT 003440 003441 GTGGCGTGTG ACGAGGTGCC TGGCCTTCTG CCAACCAACT AACCCACTAA CCAGGCCCGA GCATGCCCTA CTAACCACCC 003520 003521 CCCCGCAGCC AGATCCTACT AACTGTGCAG CTCATGGGCC TTTCAAGGGG CTGGGATATG GGGGCAGCCA AGGCTCCAGA 003600 003601 AGGCTCTGCC TATGGGCTGG GATCTTTGTG CAGACCCACG TTCCAGGACA GAGAATGCAA ATAAGACTCA CCAActctgc 003680 003681 cacttcctgt tgagtgagtt tgagtaagtc acctcacttc tctcaacctc agtttcctca gtggtagaat gcgagttctg 003760 003761 ataccttaca ggttgcagtg aggattCCCG TCAATATAAG GGTCTCAGCA CATGGCAGAC ACCTAAAAAA AAAAAAAGTA 003840 003841 TGAGGATGGA GGAAGGCCCC TCAAACCTGG TTGAACACGT CTGCTGCCTA GGCCCTGGCC TCTCTGGGTG TTCTGCACAC 003920 003921 AGATCCTTCT GCCTGGGGCA AGACACTTGG CTTTGAATCC ATGTCACTTC CCCACATTCT TCCTCCGTCT CAGCTTTCTT 004000 004001 TTCTGTAGGC AGCTCTTTTG TTCGATTACT AACCCGTCTA ACCCCTGGGG TGCCTCAACT GCACCCCGAT CATCCCTTAA 004080 004081 CAAACTAACG GACCTGCGTG CGTTCTTCCT TTTCTCTTAG CGACTCCTGT GTGTGTCTGC TGAGGTGCCC TGTCCGCTGG 004160 004161 TGCTGTGCTC TGACTTACTA ACCCAGCCCC TACTAACCCT GTTTTCTCTT CTTACTAACC CCAGCCCTGC CGAGCTCTGG 004240 004241 GCTCCCCCCG GGGGCTGGTC CCCCTCCTTT TGGCAAGCAG ATGACCTGGG GCTACTGGCC CTGTAGACAG ATGTCCCACT 004320 004321 TTGCTGCCCC ATATTGGCTG TAAGATCAGA GTCCACTGGG CCAGGTCTAA GGCAGGGGAT GGCCCTATTA ACAAGACTCA 004400 004401 GAGGAGGAAG AGGTGGTCCT GTGGATGTGG GAGGCTGGAC TCTGAGTATG ACATCTCTCC TATGTGCAGA AGTCTGGTTG 004480 004481 CCACTGGGAG TAGGTGGGAC CAGGGAAATC TCTGGGACGT GAGTGTGGAG GCCTGTTGGT CTAGACTCTA GACTGTGGAG 004560 004561 CTCTGAGCTT TTGTGTCCTC TGGAAGGAAG CTGGGGAAGA ATCCTCTCCA TTGTTAAGTG ACGGGGATAG AAGCTGTCCT 004640 004641 GCACAGGAAG TCACGAGGGG GGCGTATCCC ACGAGGAAGG CAGGAGGGGG CGTGCCCCTC ACCGGAAATT AGCAGAGGGG 004720 004721 CGTGTCCCAC ACCGGAAGTC AGAAAGCGGA GCCTTTCTTA CACCGGAAGT CAATGAAGCG GGTCTTTCCT ACGCTAAAAA 004800 004801 CCACTGAGTG GAGTATTTAG TACACAGGAA GTCGGCCAGA GAAACATTTC TCATATTTGA AGGCCGGAAA GAGGGACATT 004880 004881 TCTGACACCG GAAGTCAGTG AGAGGACTCT TTCCCACACA GGAAGTCAGC TAGAGAGCCG TCTCCCCTCT CTGGAGCCGA 004960 004961 GAGAGGCCGG TTTCCCCCAC CGTAAGTAGA CGTGGGGCCG TGACCGGAAG TCCTTGGGAA AGATCCGTCC CATTCCCGGA 005040 005041 AGCTAGAGGG CGTTAGTTGT CGGGTTGAAA AGGGGTGTGG GGAGGGGAAG CAGCTTTACC CCGGGCTCGG AGTTTGCAGG 005120 005121 AGAGAGAAGT GGGGAGCAAG AAGTGAACCT CAGGGGCTCA CAGGGTTCCC GCAGATGCTC AGGCCGGCCA GGAATGCATC 005200 005201 TCTGGCTCTC TGTTCCCACG GACGTCACTG CCTCAGCCAG CCTCCCCCAG AGCCCGCCAG CCGCTAAGCC GGGGCCACAC 005280 005281 CTGGGGGTGA TTTCATGCCT CACCTCCAGT AGGCACCTTG GTTTCTTTGG GCTAATCTCT GGCTCCCTTG CGCTAACTCT 005360 005361 TGCTCTCACC CAGCTAATCC CTGCCTCACC CTGACTGCCC CAGGGGCTGA CCACTAACAA CCAACCTGGC CCTGTCTGGG 005440 005441 GGTTCCAGGC TCCTGGCCTG GCCCTGACCG GTTCTTAATT AACCTTTCCT TCACCTTGAC TAACTCCTGC CTTCCTGGTC 005520 005521 TGTTCCTTTC AGCAGAAACT AATGGTTTGT GGATTTTTTT CTGACTAACA ACAGGTCTAA CATTCCTCGT TACTGTTAAC 005600 005601 AGCTTGGATG TCGGCATGGC TGGGAAGGGG CTAACACAGC TTTGAACTTG GCTAACACAG GTTTGAACTT GGCTAACACA 005680 005681 GGTTTGAACT TGACTAACAC AGGGAAAAGC ATAGCTAACA ATTTTGGGCG TGGTGGCTGC TCTGAGTCAG AACAATCAGA 005760 005761 AGTCGGTAAA GATGGTAGTT TTCTAAAGGA GGTGCCAGGG CTCTGGTGTG GACCAGGCCT GATGGAGCAG TGGTACCCAC 005840 005841 CAAGGTGGGG TCAGAAGTAT AGCCAGTCTT GCAAGGTTTT GGCCATTGGG CATATCTTCA CTCCTCATAG TCTGCATTTG 005920 005921 GTTTCAGTTC TTAAAAAAAT ATAGCCTTAT AGCTACAGTA GTTTGCACAA GTAGATGCAG CTCTTATAAA CCTTAAAATA 006000 006001 CCTGTCTGGT GTCTACAGAG CATATGCCAT TTTGTATAGA GTCACCCTTC CCCAGGCCAG GGCCTAGAGT CTTCATTTTG 006080 006081 GGGACTTTGT GTTTTGGAAG TTCTAGGACA TAAAGCTTTA GATCAGAGTA TTCAGAAGGG TTATAACTCC GTCAGTCATT 006160 006161 TACATGTTAG TAGTATAAAT TATCTGAGCT TCCTGTTCTA ACTTTTAGCT CTTCTAGCAT AAACTCTTCT GTGCAATTTA 006240 006241 GCTGCACCGA GGAAACGGGA GTTTTTCTGG AAGGGACTTT TGATCTCTTT AGACTGAGGG AACGTCCTTT GGGAGTAGAG 006320 006321 GGGCAGGGAG CATACGCAAG GGATTCCAGG TGCAGGTAAA AGGTGGCACT AGTTCAAGGT TTTGCTGACT CAGTCTGGTA 006400 006401 GTCAGAGTCT GCAGGAGAAG ACAGTTCAAG GCAGGGCCTG GAGGATTGGA TCAGTTTAGG GACAGGTCAA AGGCTGGCTT 006480 006481 ACAGACCTTA GAGGCAGGTT GCTTGGGTCG TTGAATGCTA GTCTGGTGCT GAGAGCCCTT TTCTCTGGCA ACTGTGGACT 006560 006561 CAGAGCTAAC CAATTGTAGT TGGCAGTGGG GGTGAAGGGT GATCCAGAGG CCTGAGCTGC AGAGGGCACA AGAGAGAAAA 006640 006641 GATGTCTTAG AAAGAGCTTT GAGAACATGC CTTGGCTGCT GGCAGGGACC TTGGATGGGG TAGTCTACAC CCGGAAGTGC 006720 006721 CTGCCTGCCA TCCTCTAGTG GCTGCCTTGC TCCATTTCAC TCAAAGCAGG AAGCTCACAC CTCCTATTCC TGAAACTCCT 006800 006801 CTTTGTTTAA CTGCAAAGAC TTGATGCtgc taaggatcta ctatgtgcca ggcactgctc tgggcgctgg gacctgcacc 006880 006881 tgggcttttt cgtcatggtg cttttatagc ctagtgggag agttggtgaa gtagatagtg attcagtgag atgggtgtta 006960 006961 tgattggtca ggggtctgtg ggagCACCAA GGAGACAGAC aagattgatg tgcacctact ctgtgccagg cgtgtgccag 007040 007041 gcattgggga tgtagtggta gttaaacacc atttggtctt caggagcttt aattctagtg tgttgggtgc aggggggtgg 007120 007121 aatggggaca gagagacacc taatccaccc tgtggtggct ttctggagag ggaggcatct aagctgagct gtggctgggt 007200 007201 ggagtgtggg tggggatgag ttccgggcag cgagaGTGGT GGACACCAGT TTCTGGGGAT CAGAGAGGAT CCAAAGAGGT 007280 007281 TCTGGAAGGT TCATGTGGAA TGTAGCAAGA GATAGGAGAC ATGGACATGG TGCCGGGTCT GGTTGCCAAG AAGTTTAGAT 007360 007361 TTTATCCTTA GGCCTTGGGG AGCGACGGAT ATGATCTGAG AAAGGGAGTT AGTGGATTTG AGTTTTAGGC TGGCCATTTG 007440 007441 GCTTTTCCAG CCCAGGTGGA ACTCAGAGGA GTTTGCAATG GCCTCTGGCC ACATTTTAGA CAACTGAGCA GAACTTTTTG 007520 007521 AAACTAGGAA GACCCTTTGG TCCATCTTTT GATAAACAGA ATCCATACAT GTCTACCCCA GTTGGAAGTA TCTCTGCAAT 007600 007601 GACTGgaaag taaagaggac caaggtgaaa ataaaggctc ggaaggggag caatcttgaa aacatgtcat cccatggtgg 007680 007681 tgggaagtcc ctggagaaga tcaggggaaa cacagtcata ggctgcaagt ctataagata attccattgg ggagggagcc 007760 007761 catttgtcat gcatggctgc aaggggcaga tacaagtgtg gagtaagctt GCAAGAGCTG ATCCTGGTCC CAGAGAGGGA 007840 007841 AAAATATGCC TTGGTGGGTA ATGAACCTTT TGTTCCCAGA GGCAGAAGGA TTGGGACTAG GCCAACATAG AGATTGGCGA 007920 007921 TGGTTGTGAG ATTCTAAGAG TGTGTGTGCA TCTTGACAAT ATTAGAGGAG GCTGAGCCCA AGCAGGCACA TTCTCTTCGA 008000 008001 CCCCTCCCTC ATTCAGTCTG CTTTGGAGTC TACTGAACAT CAAGCTTGCT ATGAGCAGGA TCTTAGAGCT GAGGAATTGG 008080 008081 CCTCCCAATC CGAACAGGTG TTATAATCCT TTCTTAATAG GTTGTGCTGT GGACCCAATG TGAGGGCTGT GCTGGTGTAA 008160 008161 ATGGTGACAT GTTGAGCTGG GGGGATGCTT TCGGGGTGGG GGGACTGGTT CCATTCCATC AAAGGCCCTC TTGAGAGTCT 008240 008241 ATCCAGGGAC CCATTGTTTT ACTTTAACAG ACCAGAAAAG ATGTTTGTTT TCCATGTCAT TACCCCCAGG GGATACCGAA 008320 008321 TGTGTGGGTA GAAATTTCTC TGTAGATTAA AAATCAGATT TTTACATGGA TTCAACAAAG GAGCGTCACT TGGATTTTTG 008400 008401 TTTTCATCCA TGAATGTAGC TGCTTCTGTG TAAAATGCCA TTTTGCTATT AAAAATCAAT TCACGCT |
Predicted Small Protein
Name | NONHSAT084532_smProtein_1727:1960 |
Length | 78 |
Molecular weight | 8266.3394 |
Aromaticity | 0.0649350649351 |
Instability index | 41.4077922078 |
Isoelectric point | 8.89630126953 |
Runs | 13 |
Runs residual | 0.0327498588368 |
Runs probability | 0.0490671667143 |
Amino acid sequence | MGSRHGEWQVPCWGGSGVLRRTYGTGRAQCREAEALGEPCPEKGLGYNPGQVTSPLSLRC SVKWKECACLSGAGRIQ |
Secondary structure | LLLLLLLEEEELLLLLEEEEELLLLLLHHHHHHHHLLLLLLLLLLLLLLLEELLLLEEEE EEEEEEEEEELLLLEEL |
PRMN | - |
PiMo | - |