NONHSAT083045

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Annotated Information

Transcriptomic Nomeclature

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Function

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Regulation

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Expression

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Allelic Information and Variation

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Evolution

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Labs working on this lncRNA

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Basic Information

Transcript ID

NONHSAT083045

Source

NONCODE4.0

Same with

,

Classification

intergenic

Length

1967 nt

Genomic location

chr21+:47649438..47655367

Exon number

2

Exons

47649438..47650441,47654425..47655367

Genome context

Sequence
000001 AGCGGGCTGG CGTCCCTGGG AAGCTGAGCG CCGCGTAGCT TCGCCGGGGG GAGTGGGGTA GGCGCGGTGA GGCCGTGGGC 000080
000081 CCCCACACCT GGCGGACCAC AGGGGCCAGA AGCCCTGGAG CCCCGCCAGG GAAGGGCTGC GTCGCTGGCC AGGACCGAGC 000160
000161 GCGGTAGAGC CTCAGCTGCT CACGGGGTCG CTGGAGTTGG GGGTGGCCCC AGGAGAAATT AAAGGTGAAA AGCCTTAGCA 000240
000241 GCAGAGGGAA GAGGAAGATG GAGGCAGAGC GAGTGACCGA ACTTGGAAGG GACAGCCGGG CGCAACAGGG CAGGGGGGCG 000320
000321 TCTGACTGTT GGAAACATGG CTGACGTCTG GAGGCTGCAG CCAGTGGTCC GTAAGTCAGG TCAAGGACCC ACAGAAGACC 000400
000401 CCAGCATGTC TTCACCTGGC CCACAGAAGC CCTGACATCC AGTTACAACT GCCCCAGCCT AGTGAGCATT TCGGCACCCA 000480
000481 CTCCTCAATT CCTACCCCCA GCCTAACTTC GAAGGGGCGG TGAGCCACAG CAAGCCGGAG GAGAAAGTTG GAAGAGAGAG 000560
000561 TGGACAAAAG AATACCCACA GGCACCTTCC CCACAGTGGA ATAGCGGGGT TTTAGACAAT CAAGGATAAT CACCTCTTCC 000640
000641 TATCCCAGTT CAGAAACGGA TGAAAAAGAC ACAGCAATAA GATGGGTGGG TATCAAAATA TCAGCTTTGC CACAAATTAA 000720
000721 AAACCTAGCT TGAAGGACAA GGCTTAAATC TGCGAGCAAG AGGGCAAGCT ACTAAATCAC CCGTAAGTCA GACAAACATA 000800
000801 TCCCCCAGCC TCTAGGCCAT GAAACTGCCT CACCAAGCAC TATGCAATTG AGTGCCCACC AGAAGACACC CCTCCAGTCA 000880
000881 ACCCACAGAC CCCAGAAAGA GTACCCAGAG GAGCCTGAGC ACACTCCACT CTATCTGTTC TCTGAAATTC AATCAAATGA 000960
000961 GTCACTCTAC TTCTCTGGAA GCAGAAAGAG GCTGGAAGTT TTTCTCCAGC ACCCACCTCT CAAGATTCCT GCCCTACATG 001040
001041 CCATTCTTAA AAGAAAATGT GACCAGATCA CTTCTCTGCC TAATCTTCAA CAACGGGTTC TCACAGCTCT CAGAAGAAGG 001120
001121 TGACAAGAAT CTCTGACCTC ACCCTGCTGG CCTGTTCCCC TCACCTGGCC ACACAACCAA GCTGGTACCT CCACGCTTTC 001200
001201 ATCATGTCCT CTCAAGTACA CTGTCTCCAG CTACACCCCT GCACTCCTCT CCGGGAATTC TGTTTCTCCT CTACCCAACC 001280
001281 AGACCCTGTT CCATCCTCTG TTTTTTCCTT GCTACCAATT CAGGCCCACG CCTCATGCAC ATTCTCTGAG AATTATGTAC 001360
001361 ATAAGTACCT GACTCTCCTG GATGTAAGCT GGGTGGGCTT AGCAGGCAGA GGCCCTGTGT CTTACTTTAT CTCTGCATCA 001440
001441 CTGATGTCTG GCACATCAAG GACTGCAAGT TTGCTGAGAG AATGAATCGC CTTTTATACA TGGAAATGTA AGCTCTAAAC 001520
001521 TGCCTCAGAG CATATGCTGG TGGGTGACAA TCTGAGGAGG TCATGAATAT AGGAGAATAT TGAAGAGGTC ACACAGGGGA 001600
001601 AACAACTTTT CCTTATGAAA AACTGGGAGA CTGACATTTA AATGGTTTAT CTGCATGATT AAATTAATCA CATTTCCAAC 001680
001681 AGTGCATCAA GCATCTGAGA ATAACATTAT TTTGAGTAAA AACAGAAACT CTTCGGGAGA GACCCCCTCC CCACAGGTCA 001760
001761 GGCTGCTCAA ATGTCCACCA TGTCTAGCAG CGCAGAGAGA TGGAGCTCAG AGGCAACTTC CTCTTCCCTT GAACTCCGGA 001840
001841 TCAGCCTTTC CAGGTGCTTT AGTCGTTCGC CTAGACACGT TCCTGTCGCC TCTGACAGCT GCAGTTGCTC CCTCATCATG 001920
001921 TCACTCTATT TGAATAAAAA AGAAACTGAA CAAAAAAAAA AAAAAAA
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Predicted Small Protein

Name NONHSAT083045_smProtein_956:1135
Length 60
Molecular weight 6842.7023
Aromaticity 0.135593220339
Instability index 61.7847457627
Isoelectric point 6.70831298828
Runs 9
Runs residual 0.0080858342404
Runs probability 0.0432589452198
Amino acid sequence MSHSTSLEAERGWKFFSSTHLSRFLPYMPFLKENVTRSLLCLIFNNGFSQLSEEGDKNL
Secondary structure LLLLLLHHHHLLLEEEELLHHHHHLLLLLHHHHHHHHHHHHHHHLLLLLLLLLLLLLLL
PRMN -
PiMo -