NONHSAT082918

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Annotated Information

Transcriptomic Nomeclature

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Function

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Regulation

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Expression

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Allelic Information and Variation

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Evolution

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Labs working on this lncRNA

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Basic Information

Transcript ID

NONHSAT082918

Source

NONCODE4.0

Same with

,

Classification

sense

Length

2523 nt

Genomic location

chr21+:46494484..46566210

Exon number

10

Exons

46494484..46494708,46536848..46536953,46538479..46538534,46540709..46540874,46548317..46548488,46552130..46552221,46553474..46553597,46554630..46554747,46564546..46564877,46565079..46566210

Genome context

Sequence
000001 gcggcggggc tgaggcgctg aggcggccgt ggcggcggcg gcggcggcgg cggcagcggc ggccAAGCGG CCAGGTTGGC 000080
000081 GGCCGGGGCT CCGGGCCGCG CGAGGCCACG GCCACGCCGC GCCGCTGCGC ACAACCAAcg aggcagagcg ccgcccggcg 000160
000161 cgagactgcg gccgaagcgt ggggcgcgcg tgcggaggac caggcgcggc gcggctgcgg ctgagCATAA TTGATATACT 000240
000241 GTGGTTACTC TACCTATTTG TGTAGGCCTC TCAGGTCATT GAAACAAGAT GTTGTACAAA TTAGCAGATG ACACTGGCGC 000320
000321 ATGGAGGAAT Gagtctagtg ttggtaatga gaagttggat atccgtttga tccttgttct actgcagGTA GTGTATATTT 000400
000401 TGAGAACAGC GTGAGGTTTA TTCTACTAAT GGAAATTTAC AAAAATACCA GTTTGAATGA TTGAGAAATC TAAGTTAAAG 000480
000481 AACCCTTGAA TAGAAATGTC GCTGTTCAGt gcgttgatcg attctcacat ctgaagccag ctgtgtattc ttgAGTGGAG 000560
000561 CCTTTCAGGC TGGCATGGAG AGCTTAAGGG GCAACTGAAG GAGACACACT GGCCAAGCGC GGAGTTCTGC TTACTTCAGT 000640
000641 CCTGCTGAGA TACTCTCTCA GTCCGCTCGC ACCGAAGGAA GCTGCCTTGG GATCAGAGCA GACATAAAGC TAGAAAAATT 000720
000721 TCAAGGAAGC TGTCAGTGTG GTGTTGGGCC TGATTGATTC GCATCAGCTC AGGTGGCGTC CTATTGGAAG GTCGGCAGTG 000800
000801 GGAGAGCAGC TGGCCAGttc ctcccgcctg caaggcaggg gagtgtacaa ggtgtgtacc ccaggggcag gaTGCTAACA 000880
000881 CTGCACTGAC TGAGAAAAGA ATTTGTCTTA CCTGTACCTG ACAGGTGTGT ACCTGAAAGA Gatgaaattg aaatggccaa 000960
000961 tgagcacaCC CTCATTCATC CAGCGAGCAT TGAGGACCCC CTAGAGGCCA GGCCCATGAG TGATGAAGAT CCCGAGGATG 001040
001041 AAGACGCCTT GCCAGCCAGG TGGAAGAAAG AAATGGGAAG AAAAAGGAAG AGAACCATAG CTACGTTGTG AGGGCATTGC 001120
001121 TTCAACTCTG GTAACTTCAT GTGAAATGAC TACAAAATGA ATTAATATGC AGTAAGAGAG CCAGTGCCCC ACCAGGGCAC 001200
001201 CTTTCCACTT GCTGGCACAC AGATTTACCA CAATTAGGAT ACTGCTTGTC CTGTCATGCC GGGAGAGTCT AAATTACTCT 001280
001281 GACTTTCAAG AAACCAAAAA TATGCATTTT TGATGTTAGG AAGATTTACT GTGCATTGGG CTGTGTCATT TGATGAGGAA 001360
001361 AAAACCAAAT GATCTCTTTA TGAAAATGAA GAATTGTAGC CTGTGGAGGT GACCAAGGAA Ccagatccca agaggcctct 001440
001441 gccactgaaa ggagattttt attacttgcg tttcctagac gggggggcac tcgcgccaag caggcccacg gggcacactg 001520
001521 gtgtcagtca aggggcagaa aggagccaca ggaaagccca ggacagagcc tgagtggggt ttctgtggga aaggcagggc 001600
001601 agggcacccg tgtaggaatg gctagtgtga acagttccag tgggccctgg gctgtaggag agatcactag ctgcctgcta 001680
001681 ccaggccctg gggtgatttc gggcaggcgg gcagttagat aagggaggtg ggtagagccg accacctgcc tggaaccctg 001760
001761 tgctggctat aagccctggg agggccagtc tctccctgtg tctgtaaggc ccacaaatgc caaagcatta ggaataagaa 001840
001841 aatggacgta atagaattga tcctgtgagg actggatgcc taactgccac atacagaatg tgagaaagca CAGAACAACT 001920
001921 GCCTTCATTG ACAAGATGGT GCCCAGAGCT CAAGACAGGC ACACAGCAGG AGGATGCCGG CAGGATCCCT CAACAAGCTT 002000
002001 ACCGTGGTAT CTTTCACAAT GTTAACTGTC ATCCCAGATG AACTTTTAAT GACAGTGTAT CTCTGAAGAT TGTGCTTTTA 002080
002081 GCGTATTTTC ACTTAAAGTC ATATCTCATT TAGTAGACCT GCCAGATTCC TGAAAAGTTA CACACAAGCC AGCTGACATG 002160
002161 ACCTTTGCCA GTCATGTTGA CCACGTTCTC ACCGAGCTGT GGACTCCTCA CTAGGAGCCT TTACCTACGG CCAGATGGCT 002240
002241 GTTGTCACTG CCTGTGGTGG GGTTACGGTT TCGGACTCAC CTGATCCGTT CTGCCGGGAT TACCTACGGC CAGATGGCTG 002320
002321 TTGTCACTGC CTGTGGTGGG GTTATGGTTT CGGACTTACC TGATCCGTTC TGCCGGGATT ACCTACGGCC AGATGGCTGT 002400
002401 TGTCACTGCC TGTGGTGGGG TTATGGTTTC GGACGCACCT GATCCGTTCT GCCGGGATTT TAAAGTATGG GAGTTTAGGC 002480
002481 ATACTTTGCA AGTTGTTTCT TGAATATACT TTTCTGAATT ATG
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Predicted Small Protein

Name NONHSAT082918_smProtein_2234:2362
Length 43
Molecular weight 4557.1722
Aromaticity 0.142857142857
Instability index 58.7452380952
Isoelectric point 4.55633544922
Runs 9
Runs residual 0.038125376733
Runs probability 0.0425621700131
Amino acid sequence MAVVTACGGVTVSDSPDPFCRDYLRPDGCCHCLWWGYGFGLT
Secondary structure LEEEELLLLEEELLLLLLHHHLLLLLLLLEEEEEELLLLLLL
PRMN -
PiMo -