NONHSAT082918
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT082918 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
sense |
Length |
2523 nt |
Genomic location |
chr21+:46494484..46566210 |
Exon number |
10 |
Exons |
46494484..46494708,46536848..46536953,46538479..46538534,46540709..46540874,46548317..46548488,46552130..46552221,46553474..46553597,46554630..46554747,46564546..46564877,46565079..46566210 |
Genome context |
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Sequence |
000001 gcggcggggc tgaggcgctg aggcggccgt ggcggcggcg gcggcggcgg cggcagcggc ggccAAGCGG CCAGGTTGGC 000080
000081 GGCCGGGGCT CCGGGCCGCG CGAGGCCACG GCCACGCCGC GCCGCTGCGC ACAACCAAcg aggcagagcg ccgcccggcg 000160 000161 cgagactgcg gccgaagcgt ggggcgcgcg tgcggaggac caggcgcggc gcggctgcgg ctgagCATAA TTGATATACT 000240 000241 GTGGTTACTC TACCTATTTG TGTAGGCCTC TCAGGTCATT GAAACAAGAT GTTGTACAAA TTAGCAGATG ACACTGGCGC 000320 000321 ATGGAGGAAT Gagtctagtg ttggtaatga gaagttggat atccgtttga tccttgttct actgcagGTA GTGTATATTT 000400 000401 TGAGAACAGC GTGAGGTTTA TTCTACTAAT GGAAATTTAC AAAAATACCA GTTTGAATGA TTGAGAAATC TAAGTTAAAG 000480 000481 AACCCTTGAA TAGAAATGTC GCTGTTCAGt gcgttgatcg attctcacat ctgaagccag ctgtgtattc ttgAGTGGAG 000560 000561 CCTTTCAGGC TGGCATGGAG AGCTTAAGGG GCAACTGAAG GAGACACACT GGCCAAGCGC GGAGTTCTGC TTACTTCAGT 000640 000641 CCTGCTGAGA TACTCTCTCA GTCCGCTCGC ACCGAAGGAA GCTGCCTTGG GATCAGAGCA GACATAAAGC TAGAAAAATT 000720 000721 TCAAGGAAGC TGTCAGTGTG GTGTTGGGCC TGATTGATTC GCATCAGCTC AGGTGGCGTC CTATTGGAAG GTCGGCAGTG 000800 000801 GGAGAGCAGC TGGCCAGttc ctcccgcctg caaggcaggg gagtgtacaa ggtgtgtacc ccaggggcag gaTGCTAACA 000880 000881 CTGCACTGAC TGAGAAAAGA ATTTGTCTTA CCTGTACCTG ACAGGTGTGT ACCTGAAAGA Gatgaaattg aaatggccaa 000960 000961 tgagcacaCC CTCATTCATC CAGCGAGCAT TGAGGACCCC CTAGAGGCCA GGCCCATGAG TGATGAAGAT CCCGAGGATG 001040 001041 AAGACGCCTT GCCAGCCAGG TGGAAGAAAG AAATGGGAAG AAAAAGGAAG AGAACCATAG CTACGTTGTG AGGGCATTGC 001120 001121 TTCAACTCTG GTAACTTCAT GTGAAATGAC TACAAAATGA ATTAATATGC AGTAAGAGAG CCAGTGCCCC ACCAGGGCAC 001200 001201 CTTTCCACTT GCTGGCACAC AGATTTACCA CAATTAGGAT ACTGCTTGTC CTGTCATGCC GGGAGAGTCT AAATTACTCT 001280 001281 GACTTTCAAG AAACCAAAAA TATGCATTTT TGATGTTAGG AAGATTTACT GTGCATTGGG CTGTGTCATT TGATGAGGAA 001360 001361 AAAACCAAAT GATCTCTTTA TGAAAATGAA GAATTGTAGC CTGTGGAGGT GACCAAGGAA Ccagatccca agaggcctct 001440 001441 gccactgaaa ggagattttt attacttgcg tttcctagac gggggggcac tcgcgccaag caggcccacg gggcacactg 001520 001521 gtgtcagtca aggggcagaa aggagccaca ggaaagccca ggacagagcc tgagtggggt ttctgtggga aaggcagggc 001600 001601 agggcacccg tgtaggaatg gctagtgtga acagttccag tgggccctgg gctgtaggag agatcactag ctgcctgcta 001680 001681 ccaggccctg gggtgatttc gggcaggcgg gcagttagat aagggaggtg ggtagagccg accacctgcc tggaaccctg 001760 001761 tgctggctat aagccctggg agggccagtc tctccctgtg tctgtaaggc ccacaaatgc caaagcatta ggaataagaa 001840 001841 aatggacgta atagaattga tcctgtgagg actggatgcc taactgccac atacagaatg tgagaaagca CAGAACAACT 001920 001921 GCCTTCATTG ACAAGATGGT GCCCAGAGCT CAAGACAGGC ACACAGCAGG AGGATGCCGG CAGGATCCCT CAACAAGCTT 002000 002001 ACCGTGGTAT CTTTCACAAT GTTAACTGTC ATCCCAGATG AACTTTTAAT GACAGTGTAT CTCTGAAGAT TGTGCTTTTA 002080 002081 GCGTATTTTC ACTTAAAGTC ATATCTCATT TAGTAGACCT GCCAGATTCC TGAAAAGTTA CACACAAGCC AGCTGACATG 002160 002161 ACCTTTGCCA GTCATGTTGA CCACGTTCTC ACCGAGCTGT GGACTCCTCA CTAGGAGCCT TTACCTACGG CCAGATGGCT 002240 002241 GTTGTCACTG CCTGTGGTGG GGTTACGGTT TCGGACTCAC CTGATCCGTT CTGCCGGGAT TACCTACGGC CAGATGGCTG 002320 002321 TTGTCACTGC CTGTGGTGGG GTTATGGTTT CGGACTTACC TGATCCGTTC TGCCGGGATT ACCTACGGCC AGATGGCTGT 002400 002401 TGTCACTGCC TGTGGTGGGG TTATGGTTTC GGACGCACCT GATCCGTTCT GCCGGGATTT TAAAGTATGG GAGTTTAGGC 002480 002481 ATACTTTGCA AGTTGTTTCT TGAATATACT TTTCTGAATT ATG |
Predicted Small Protein
Name | NONHSAT082918_smProtein_2234:2362 |
Length | 43 |
Molecular weight | 4557.1722 |
Aromaticity | 0.142857142857 |
Instability index | 58.7452380952 |
Isoelectric point | 4.55633544922 |
Runs | 9 |
Runs residual | 0.038125376733 |
Runs probability | 0.0425621700131 |
Amino acid sequence | MAVVTACGGVTVSDSPDPFCRDYLRPDGCCHCLWWGYGFGLT |
Secondary structure | LEEEELLLLEEELLLLLLHHHLLLLLLLLEEEEEELLLLLLL |
PRMN | - |
PiMo | - |