NONHSAT082915
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT082915 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intergenic |
Length |
967 nt |
Genomic location |
chr21-:46491648..46494080 |
Exon number |
2 |
Exons |
46491648..46492238,46493705..46494080 |
Genome context |
|
Sequence |
000001 gaccgcaggc gcccgGCGAT TGGCGTTTGC GTTTTGCGGA GGTGGCGTCT CGCGGTGctg cccaggctcc cgggcccccg 000080
000081 cgctcctccc tgcagcgggc gctgcccccg ccgagccccc gccgagcccc cgccgagccc ccgccgagcc cccgccgagc 000160 000161 ccccgccgag cccccgccga gccacccctg cttctccctc tcccGGAGTT GCCTGGGACA CGCGGGTCCC GCCGGCCCCC 000240 000241 TCTCCCCGCC CGTCATCCTC ACTGTAGACT CCGGGAGAAC CAGGTCGCGG CCCAGGACCC TGGCTGGACA CGGTTCCCGC 000320 000321 CGTCTCCTGT TTAGTCCGCA CTGACACTAG CAGCTGCTCC AGTTACCAAC GTTTAGAGCA GCAGAGAGCG GATGGCGCCC 000400 000401 AAGGCCGGGA CCCTCTGCTG CTCCCACAGG CCTCTCAGGC GGCTCTGCAG GACCAGCCAG CAGCCTCTGA TGCTCCCTTC 000480 000481 CTATTCCATG GCTTCAGGTG CCATCCTCTC CACAGAGACG GTTTCTATTG TGACGCTCTC CCTGACTTGG AAGAATGGCA 000560 000561 CTGGGAACAT TCCCCTTGGT GCTGATGTCG GGGAGGAAAG CAGTTTCCAG TCGCCTGGGG CCAGGACATG GCGTTCCCAG 000640 000641 CTGTTGTAGA GCATGAAGCA CCAGGATGCC CATTCGGGTG CCTGCTGAGA TCAGGCTCTT TGAGAAGGAA TCCTGTGGTC 000720 000721 GCCTGAGGAA GTCCAAAAAA ATTTCGAGGA CATCTCAGCC ATCCATCCCC TGTTCACTGT GGAGGTTGAA CACCGGGGCT 000800 000801 CCTGGAGGGG GGCCCTGGGT CTCCACAGAA GTGCTGGCAG CCACCATCCA CTTCCTGGCC TTCCGTGCCC GCTCCACCTC 000880 000881 TGTTCTGTTG TTTACTGTCT CCTTTGTGGG AATTATGGAA TAAACAATCA CTCTGGTGTC CTGGAAAATA AACCTGATGC 000960 000961 TGGAGGG |
Predicted Small Protein
Name | NONHSAT082915_smProtein_665:922 |
Length | 86 |
Molecular weight | 9389.953 |
Aromaticity | 0.0823529411765 |
Instability index | 46.3458823529 |
Isoelectric point | 10.8473510742 |
Runs | 12 |
Runs residual | 0.00463458110517 |
Runs probability | 0.0603912736266 |
Amino acid sequence | MPIRVPAEIRLFEKESCGRLRKSKKISRTSQPSIPCSLWRLNTGAPGGGPWVSTEVLAAT IHFLAFRARSTSVLLFTVSFVGIME |
Secondary structure | LLLLLLLEEEEEEHHHLLLLLLLLLEEELLLLLLLLLLEELLLLLLLLLLLLLHHHHHHH HHHHHHHLLLLLEEEEEEEEEEEEL |
PRMN | LLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLHHH HHHHHHHHHHHHHHHLLLLLLLLLL |
PiMo | iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiTTT TTTTTTTTTTTTTTToooooooooo |