NONHSAT082399
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT082399 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intergenic |
Length |
2761 nt |
Genomic location |
chr21-:44778027..44782229 |
Exon number |
2 |
Exons |
44778027..44779366,44780772..44782229 |
Genome context |
|
Sequence |
000001 GGGTCGTGAG AAAATACGCA GGAAGAGATA CCCCGTGGAC ATGTTTCCCT TGGAAAGTGG AGGGAACCCT CTGAGCCGTG 000080
000081 ATTCCGCCTG AATTAAGCAG TGGCGGGCAC TGGCCTGGCA GGCGGCTTCT ACTGCCTTGG ATTTGCACCT CTAAGGGGTC 000160 000161 ACAGGGGCCA CCCCCGAAAC AAGACAAAGT GTGATCATGG ACAGGCCCTC GGGGGGCCGG AAGAAGGAAC GGCTCCAGTG 000240 000241 ATGAAAGCTG AACGCCAGCT CTCTCCCCAT CGTTCTCCCG GACCAGGAGA GGGCTGCTCG GCAGGGCTAG GTTTAAAAAC 000320 000321 CTTCCATGCA ACTTACGAAG GCATCCACAG TGACTTCTGC TGCTGTGGTA CGTTCTGCCC TCCCCTCCTC CCCGCCCCAT 000400 000401 CCTGTTCTCG GCTACAAGTT ATTTATATGT ACAGTGTCAT CTGAACGTGC ACGGGCCTAT CCCAGGACAT CACACACAAA 000480 000481 GAGGCGGCGG TGAACCCAAG CCGCCGGGCC GGCCTGTGGC TCAGTGTGTG TTTCAGAAGT CCCGGCCCCA GGCAGCTCTC 000560 000561 CTGAACAGAG CCACTGGAAC TCAGGAGGGT CAGGACCACA GCCCAAACAA CTGCGACCGA AAACACCCTA CAGGGCTTGA 000640 000641 GAACTAAAAA ATAAGGAGGG ATCTGGGCAG CCGAGCTGCC TCCTAAAGAA GCCACGTCAT AGAGAAAACT GCTTGCTCTA 000720 000721 TCCATGAGAC GGAGGCGGCC GGGGTGTCCT GCCAGCAGAC ACGGGTCTGT CCATCACCGG CCACCACGCT GCCTCTGTCC 000800 000801 TTCACTCCCA TTTAAGGGAA AACGATATCT CTTCATCTTT CTGCCCTGGA CATTGGAAAT CAGCGGTGAG AACAGTGCTC 000880 000881 TTGCTACAAA ATGCTCAGGT TCTAGAATGC TCCCATCTTT CCTTCCATTC CACATGGAGT TTATCCAAAG CACAAAGGCC 000960 000961 AGTCACGGCA CTGACATCCG TGGTGCCCGC TCACCGGGGA GTGGGAAGCA CAAGCCTGTC CTCAGAGGAC CGTGACTGTG 001040 001041 AGCCCGCAGC TGCTTGTGGG TGGGGCCAGC CCGCAGCTCC TCCTGGAGGC CTCGGGCTTC TTGCTGCTGC ATTTCTGTGA 001120 001121 CATGTGGAGG GAGGATCGTT TTGACACCTG CCTGGGAAGT TTCAAAGGAG ATGGCCTCTG GGCAGGGGTT TTAAACTGAA 001200 001201 GGGCACCACA CAGATCCAGA TGTGAACTGT GGCTGTTGTT TGCAATTGAA GCAGAGATGC AGAGGATGGA ACAGGAGTGC 001280 001281 TGGCCATGCT GCTCTATGGC CTTGGCCCAG CCAAGACCTG CAGTCAATGG GGCTACGGGA CCCCCGCTAC ACAGGGACCT 001360 001361 GGGAACCACC TTTGCCGCGG TTGACCGCTG GGCCCGCCAT GCACCGCCCA CACCTGGCTG TGCCTGGAGA CTGAGAGCAG 001440 001441 GGGGTGACGG TGGGCCTGGA AGAGTCTCTC CCTTTTGCAA ACGCCAGCCA CAGAGGTTTA TTTTTCTCCC TGAGAGAAGG 001520 001521 AAGAGTGAAG GCTGAGACTG AGACAGAAGG ACAGAAGGAG AAGACTTAGA AGCCAGTGAG CCCGGAACCA CGAGACGCGC 001600 001601 TCTGAGGACA CGGGGCCTCG GGGAAACCGG GCACGGGCAG GGGTTGGTCT TGGCTTCCCC GCAACATTGC CGCGAGCTCG 001680 001681 GGTGCCGTCT CCACTCGCAG GCTGGCCTGT CCTCTGCAGC CACGAGCTCA GGCACCGTCT CCGTTCATAG GCCAGCCTGT 001760 001761 TCTCTGCAGC CTGAGGTCCC TGTGGTGCCA ACATCCAGAT GCTGAGATAA TTCTGCCAGG GTGTTGGCTG ATCGGTGATT 001840 001841 GGTGGTTGGC TGTTCCGTGA GTTCTGCATT GATCTTGCTG GCTGAGCGTC CAATGCGGAG GGGCAGGTGC TGTTAGGGTC 001920 001921 TCCACTCCCA TCCCTCTCCC CAGGACTCAT CACCCACTGC AACCGTAAGC TGCTAGGGGC TCACAGCCGT GAGTCTTTGG 002000 002001 GACGGGTGGT CCCACCTGGC ATGTAGCTCA GGCTCCTAGC CCCAGGACCC TGCCGCTGCT CCCCTCCCGC CCACATCTTG 002080 002081 GCTTAGCCGT CTTCCCTGGC TGCCAGCCCC TTCCCCTGGT CTTAGTTGGC TTGAGCCACT AAACTGAAAT AGCACACCCT 002160 002161 GAGGCCTTCA ACAGCAGACC TGATTTCTCA CCATCTGGAG GCTGGAGGTC CAGGATCCAG GCCCCCAAGG CTGCTTTCTC 002240 002241 CCCCACTCCC CCACCCACCT TCCAGGACAC GCAGACTCCA CCCTCTTGCT GCCCTGTCTC AGGGCTGTCC CTCTGGGCAA 002320 002321 GCAGGCCCCT GGCATCCCCG TGTGTCTTCT CCTCCTGTTC TTATAAGGAC ACCAGTCATA CTGGATCTGG GCCCACCCTA 002400 002401 GTGACCTCAT TTACCTTAAT CACCTCTGAA AGACCTTGTC TCAAAAACAG CCACATTCTG GGGCACTGAG GGTTAGGGCT 002480 002481 TTAACATGGG AATTTGAGGG ATGCAATTCA CCCCATAAAA CCCAGACCAT TCCCCCAGTA AATCACTTTC ACAAGAGCTC 002560 002561 TTCTCTCAGG CTTTGCTTCT GGGGGATCCC CCTTGAGATG GATCCATCTA GCTTCCTGCT TCTCAAAGAA CAGAGGGGAG 002640 002641 AGCTCTGGTG CGAAGGGAAC GGGTGGCCTC GGGGACCTGC GGATAAGCTG CTGGCACTGC CAGGGGACAG GCTGAGCTGA 002720 002721 AAGCCAGGAG GAGGGCGGCG AGGCCCGGGG CCGGACCTCA T |
Predicted Small Protein
Name | NONHSAT082399_smProtein_1256:1534 |
Length | 93 |
Molecular weight | 10184.6216 |
Aromaticity | 0.0760869565217 |
Instability index | 67.8152173913 |
Isoelectric point | 10.1469116211 |
Runs | 11 |
Runs residual | 0.0156396621833 |
Runs probability | 0.0390149507796 |
Amino acid sequence | MQRMEQECWPCCSMALAQPRPAVNGATGPPLHRDLGTTFAAVDRWARHAPPTPGCAWRLR AGGDGGPGRVSPFCKRQPQRFIFLPERRKSEG |
Secondary structure | LLLHHHLLLLHHHHLLLLLLLLLLLLLLLLLLLLLLLHHHHHHHHHHHLLLLLLLLEEEE LLLLLLLLLLLLLLLLLLLEEEELLLLLLLLL |
PRMN | - |
PiMo | - |