NONHSAT081903
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT081903 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intronic(AS) |
Length |
2336 nt |
Genomic location |
chr21+:36399049..36403858 |
Exon number |
2 |
Exons |
36399049..36399291,36401766..36403858 |
Genome context |
|
Sequence |
000001 ACTGAAAGAG CGACGCAGAA AGCAACAGCC AGAAACGGCG GGGACGCGAG CGGCCCAGAC AGGAAGGGAG GCGGTGGCGC 000080
000081 AGCTCTGGTG CGCAGCGCGC CGCAGCGACG GAACTTCTGC AAAAGCTGCC TGCCCGCGCG TTATCAGCGG CGCGCAGGCC 000160 000161 TGTGGTTTTC TCGCTCTCGC AACCCTGCTT TAACTGCCGG TTTATTTTTC GACAAACAGG ATGCCTCCAT CTGAGGCTGT 000240 000241 CAGTTGGGCA GGTGAGTGGG GTAGTTATGG AGACCACCTG AGAGAGCCTG GAACACGGTT GGTGCTGGCA ACCTACAGGG 000320 000321 CCCCAGCCCT TGGCGAGGTA TCTTTCTGGA GAAATGCTTC CTAGTGTTCC TAGCCATTCC TTGCCTCAGG CACCTTCACT 000400 000401 ACCATCCCAA TCACAGGCCT ACTGCTCTTC CTGGTCCAGC TTGCTGGTCC TAGTGCTTAG CTTCTCTCTT AAGGGGATCT 000480 000481 TTTGACCTCT GTAGGAATTT CTTCCGTCTT GGGCTTCTGG CATGGTTCTA TTGGTCACCT GGCACCCTCC TCACCACTTC 000560 000561 AGTGGTGCCC CCAACTCTGC TTCTAGGACT CTGGCAAGTC CTACAACCAC GATCCTGGTA ATAGTACGAG GTTGGATTTG 000640 000641 TCAACCTTGT CACGATCACA TTTCTGTTCT GCGCATTGTG GGCTGTTTGG TAGCATCTTT GGCATCTGCC TACTGGATGT 000720 000721 TAGTACAGTC CCCTCTATCC CTTGAGTTGT GACAACTAGA AATGTCTCCA GACAGTGCCA AATGACCCCC TTCCTCCTCA 000800 000801 CACTGCCTCC TTCTTCCAGG TAAAAACCAC TGGTGAGGCC GGGTGCGGTG GCTCACGCCT GTAATCCAAG CACTTTGGGA 000880 000881 GGCCAAGGCG GGTGGATCAC GAGGTTAGGA GATCGAGACT ATCCTGGCTA ACACGGTGAA ACCATGTCTC TACTAAAAAT 000960 000961 ACAAAAAATT AGCCGGGCAT GGCGGTGTGC ACCTGTAATC CCAGCCACTC AGGAGGCTGA GGCAGGAGGA TGGCGTGAAC 001040 001041 CTGGGAGGCA GAGCTTGCAG TGAGTCGAGA TCGTGCCACT GCACTCCAGC CTGAGTGACA GAGTGAGACT CTGTCTCAAA 001120 001121 AAAAAATAAA AAATAAAAAA ACCACTGGTG TAAGATATTT TAAGGTGACA AGCATGGAGA AGAAGAGAAA AGTAATGAGG 001200 001201 AAAAACTAAA CTGGCAAGAT CAATAAATAT GGTCTAAATA AATGAAAAAG GAGATTGACT AAATAGACCC ATGGGAAATG 001280 001281 AAACCAGGAG ATAAAATGTT AAAGAAAAGT ATAAAAATTG CAAAGATAAG AGGGCATTAG ATCGGCTCAA AATGGATTAA 001360 001361 AGACTTAAAC CTAAAACCTG AAACTATAAA ACTACTGGAA GAAAACACAG GGGAGAGGCT TCTTGCCATT GGTCTGGGCA 001440 001441 AAGATTTTTT TGAATATGAT CTCAAAGCAT ACGCAACAAA AGCAACAGTA GACAACTAGG ATGGCTTCAA AATAAAAAGC 001520 001521 TTTTGCACAG AAAAGGAAAC ATTCAACAGA ATAAAGACAA AACCTACAGA AAGGGAAAGA ATACTGGCAA ATCATAGCAT 001600 001601 TTGATAAGGT ATTAATTTCC AAACTACATA AAGAACTCAA ACAACTCAAT AGCAAGGAAA TAAATAATGT GATTTAAAAA 001680 001681 CTGGGCAAAG GACCTGAAAA AAACATTTCT CAGAAAAAGG TACACACATG TCCAGTAAGT ATAAAAAATA CTCAACATCA 001760 001761 CTCCTCATCA TGCAAATTAA AACCACAGTG AGCTATCACC TCACACCTGG TAGGAAAGCT TTTATCAAAA AGTTAAGAGA 001840 001841 TGGCCGGGTG CGGTGGCTCA CGCCTGTAAT CCCAGCACTT TGGGTGGCCA TGGCAGGCAG ATCACCTGAG GTCAGGAGTT 001920 001921 CGAGACCAGC CTGACCAACA TGGAGAGACC CTGTCTCTAC TAAAAATACA AAATTAGCTG GGCATGGTGG CGCACACCTG 002000 002001 TAATCCCAGC TACTCGGGAG GCTGAGGCAA GAGAATTGCT TGAACCTAAG AGGCAGACGT TGCGGTGAGC CGAGATCGTG 002080 002081 CCACTGCACT CCAGCCTGGG CAACAAGAAC GAAACTCCGT CTCAAAAAAA TAGAAAAATC AAGAGATAAC AAGTATTGGT 002160 002161 GAGGTTGTGG AGAAAGGGAG CTCTTGCACA CTCTTGGTGG GAAGCCATTA TGGAAAACTG TATGGAGGTT CCCCCCAAAA 002240 002241 TTAAAAATAG ACTACCCTAT GATCCAGAAA TCTTATTTCT TGATTTTTTG GTATATATCC AAAGGAAATG AAGTCAGTAT 002320 002321 GTCGAAGAGA TATCTG |
Predicted Small Protein
Name | NONHSAT081903_smProtein_521:751 |
Length | 77 |
Molecular weight | 8300.726 |
Aromaticity | 0.0657894736842 |
Instability index | 49.1065789474 |
Isoelectric point | 7.83270263672 |
Runs | 10 |
Runs residual | 0.00983061101028 |
Runs probability | 0.053003003003 |
Amino acid sequence | MVLLVTWHPPHHFSGAPNSASRTLASPTTTILVIVRGWICQPCHDHISVLRIVGCLVASL ASAYWMLVQSPLSLEL |
Secondary structure | LEEEEELLLLLLLLLLLLLLLLLLLLLLEEEEEEEELEEELLLLLLLEEHHHHHHHHHHH HHHHHHHHHLLLLLLL |
PRMN | LLLLLLLLLLLLLLLLLLLLLLLLLHHHHHHHHHHHHHHHHHHLLLLHHHHHHHHHHHHH HHHHHHLLLLLLLLLL |
PiMo | iiiiiiiiiiiiiiiiiiiiiiiiiTTTTTTTTTTTTTTTTTTooooTTTTTTTTTTTTT TTTTTTiiiiiiiiii |