NONHSAT081901
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT081901 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intronic(S) |
Length |
3230 nt |
Genomic location |
chr21-:36314114..36317337 |
Exon number |
2 |
Exons |
36314114..36317198,36317204..36317337 |
Genome context |
|
Sequence |
000001 TGGCCTACTG GTAACTGTGC TCATATTAAT CTTAGTTATG AAACAGATCA TTTAGAAGGT AACATTGGAA ACAAAAGGCT 000080
000081 AAACTCAGAT ACATAATTTG CCAGGCCTCA TAAACTGTGC TTTGATGTTC TAACAACTTC CCAATAGAAG CCATCTGTTA 000160 000161 AACAAGCAAT TCATTCAGAG TGGAGGTATT AACATTAAAC TGTCTTTCAT ATAGTTAGTC ATTAGTTATT ATACTATCTG 000240 000241 TCTCTCATAT AGTATAGTTA GTAATTACTG AAAATAAGAT AATCCTATTA ATGGCCACAA CATGATTCTG ATGGTTAGTA 000320 000321 TATTCTCTAG CCACAAAAAC CCAGACCTAG GCCTCCCCAA TTCTGCCATT CACACTGCAG CATGTGCCAT CTGTCCTAAG 000400 000401 AGGAGACGAC AGGCTCTCCT CTTCCTCCAT AGATTTCATT TGAACTGTGA GAACCAAGTT TGCCAAATGA CATTTGTGCT 000480 000481 AGAGGAAGCA CTCACATGAG GCCAACCACC CAAAGCAATA CAATATTTAA CCACATATTT CAGTGCTGGC ATTCGTACCC 000560 000561 ACACAAATAT TAACCAATCA AAACTTATAG TCTCCTTGCC AAATTCTCAG AAGAATGGCT GAAGAAGTAT CACATGGTCT 000640 000641 GAATCTATAC AACTTTACCC AGATTCCTGT GTAATTCAGG GGAATTCTCT AGTTTTGTTT AGTACGAGTG AGAAACTCAA 000720 000721 AGAATAAGAA AATTGTTGGG GACAGGCACA GTGGCTCATG CCTGTAATCC CAGCACATTA GGAGGCCAGC TGGAGGACTG 000800 000801 CTTGAGTCCA GGAGTTCGAG ACAAGCCTGG CCAACATAGT GAGACCCCAC CTTTACAAAA GACAAAAATA ATTAGTAAGG 000880 000881 CCTGGTGGCA TGCATTTGTA GTCCCAGGTA CTTGAGAGGC TGAGGCAGGA GGATCACTTG AGCCCAGGAG TTTGAGCCTA 000960 000961 CAGTGAGCTG TGATCACACC ACTGCACTCC AGCCTGGGTG ACAGAGCAAG ACCTCATCTT TAAAAAGTAA AAAAAAGTCT 001040 001041 TGAGGGCTAT AGTAAGCACA AGAAATTATT TCCTTAAACT CCTTTTTTTT CTTCCTACGC TATTAAAAAG GAAAAGATTT 001120 001121 GGGGAAAAGA GAAAGGGTGT GATATAAGCA AATGCTCTAT ATCGGCAAAT CTCTCTGTAA CTTTCACCAC TACTATCTCT 001200 001201 GTCAGGCGAG CATAAAGTGA AAATATTTAG CTCAACATTT GTGTAGGAGG ATTTGCGAGG GTTCCAAATT TTCTCCCCAC 001280 001281 AATTTTGCAA AATCCAGTTG CCAATAATCA GGTAATTTTT ACTTGAGTGC TTTAGAGCAA CCCCAAAGAC TGAATTTTAT 001360 001361 TTATCTCTGA GTCTCTTTAG GGGGTGAAAA AACATCAACA TAAACAACTG AAGGAATATC ACCTGGTAAA ATCATTGACC 001440 001441 CCACACCGGG ACTGACTCCA TGTTCCCTCC CCAAGCCATA TTGGCTTTCT ATAACAACCT TCTGTCTTTT GTATGAAGTA 001520 001521 AGATGGATTT TGATCCGTTG ATCCCCTTAT CTTTCTTTGG TGTAACAACT GGAAAACTGG CAATTCATGT GAAGTACTTT 001600 001601 GCCAAGAGGA TAGTAAAGAT CCTTTTAATG TTTTAAGCAT CCTTTGTTGA GTTATTGTGT GCTGGAATGG GCCTAAGGTC 001680 001681 CATTGTGTGG TTCATGTTGG AGCCTGGATG GGTACATCTG GTAAAGACAG CAAAGAAGTT AAAGGGGGAA ATGTTCCTCA 001760 001761 AGACAGATTC TTTTCTGTTT TTCAGTTCCT GGGCAGTTCT TTGTATTTTT CCACACAGGG TGAAAAACAC AGTCATAAAA 001840 001841 CCCCGAACAG TAGAACAGTC AGAATGAAAT TAGTTTGTTT TCACTGAAGC ATTTGTGCTT GTTTCCTTCA GAAGCTGATC 001920 001921 TTGATGACAT GATTGATTGT CCCTGTGGAT CCTTCCCCTT TATGCTTTCC ATATCCCCCA ACTGCTCAGA GATTGACCGC 002000 002001 GTGCCAATGC AGGCAGAAGG GACACGGGTT AAAAGCTGCC AAGGCGTACT CGCTGCCCTC AGCCCAACAC AGGGAAGCAG 002080 002081 TCCTAGGAGC TTGACTTGAC TTCAGGGTTC ACAGTTGATA TGTGCATCTG GTCCGGGGAG AAAGAGGGAA ACTTTCCTTC 002160 002161 AACCTGACCC AAGGCTCTAA GCTCACTTGC TGCCTCACTC TTTTCCTCTC ATAACACAAA GTTGTGCCAT GCTGAGTGGA 002240 002241 GCCTCCTGGC TCTGAAACCA ATGTGGTTTG CCATCTAGAT CAATGCAGAC TTCATTGTGC ACTGAATGCC AGCAAGAGAG 002320 002321 GGGCATCTGG TGTCATCTCA ACCATGGAAA GGGTACATTA GCCCTGCTAA TTGTCCTCAC CACTATGCCT TAAAAATCCC 002400 002401 CACTCACCCT TCCCAGGTGG CTGCAAAGGA TCACTCATAT TCACTTTGTG TCTGATCCTG GTATTTAATG CCATTTGTAT 002480 002481 TCATCAGACT AATGGAAATA TCAATTAAGC CCAGTCAAGA CTAGCTCTTA GAGCAATAAT GGACACTTGT ACCTGAGCTC 002560 002561 AGAGCAGAGG GAAGAAAGGC ATCTGGAGGT AAATGGTGAA TGACGGTCAA GTGACTATGA AACCTGCAAG TGAACCAATA 002640 002641 AAGTTAAAGT ATTGGTACAA ATTTGTACAC ATTTATATAG CCTTACCAGG TATAGTCATC AGTGTACAGG CAAATGATTT 002720 002721 TTTTTTTTTT GCTTGAGTGC ATTAGAGAAA GTCCAAAAAT GCAGTCTTAT AAATCTTGGA AAACTGCAAT TTAAAATAAG 002800 002801 CTGTGGAAGA TCACCTAGCC TAATAATTGA ACCAACACTG GGATCTAGCC CCAAATTCTA TCACTGTGAG CACACAGGCT 002880 002881 CACTCCAACA TAGGCGGAAC CTCGGGGAAT GATTTTTAAA TATCCCATTA CCATAAAATC TCTGGTATTT GAATCTCACT 002960 002961 AATTCAATCT GGTATTTGAT GGATGCAGCA GGGGGTGGCC GAGACATTCA TAAAGTTTGA AGGTACTCTT TCTTCATTGT 003040 003041 TTCCTAGTTT TCCTTGAGGA ATCAGATGAT ATTTTGCATA GTTCAGAGTG CCCTCCAAAA GAAAATCAAC AGTTTAAGGA 003120 003121 GTTTTCTGCA TTACTGAGAT GAAGTAAGCT TACAAGCTTT AACTTGCTGC ATATGTCTCT CATTAAAGAA TCTTCCAACC 003200 003201 TTCAAAAAAA AAAAAAAAAA AAAAAAAAAA |
Predicted Small Protein
Name | NONHSAT081901_smProtein_1928:2098 |
Length | 57 |
Molecular weight | 5902.7786 |
Aromaticity | 0.0357142857143 |
Instability index | 59.1339285714 |
Isoelectric point | 5.96209716797 |
Runs | 7 |
Runs residual | 0.0282982045277 |
Runs probability | 0.0293486764075 |
Amino acid sequence | MIDCPCGSFPFMLSISPNCSEIDRVPMQAEGTRVKSCQGVLAALSPTQGSSPRSLT |
Secondary structure | LLLLLLLLLLEEEELLLLLLLLLLLLLLLLLLEEEEHHHHHHEELLLLLLLLLLLL |
PRMN | - |
PiMo | - |