NONHSAT081595
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT081595 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intergenic |
Length |
4482 nt |
Genomic location |
chr21-:29488413..29600986 |
Exon number |
6 |
Exons |
29488413..29492193,29535921..29536036,29542397..29542462,29584559..29584667,29598203..29598310,29600681..29600986 |
Genome context |
|
Sequence |
000001 CAAGATAGGT TGAAAGGGGA GTTCGTAGTC ATCTCTTCTA ATCAGGAGAT CCCTGAAAGC CGAACATTTA AATGTTCTCT 000080
000081 TCTTGAAATA AAAATACCAT AGTTTTAGTT AGGAATGTGC TATGTTGAAA ATAACAGAAA AACTGACCTC TGTGGCTTAA 000160 000161 ACAAGTAAGG ATTTATTTTC CTTCCGTAGC TGGAGGAAGG GAGGTGCAGC TTTGGCTCAG CTCTTAACAG TGCAACATCT 000240 000241 AGTGCCTCTA TAGTTCTCTT GGACACAGAT GGCTGCTTTC GAAGAAGAAA GAAGTGGAAA GTGATGGAGT TTCTATGCTC 000320 000321 CAGCTCTCTT TGCCTGCTGC CATCCACGTA AGATGTGACT TGCTCCTCTT TGCCTTCTGC CATAATTGTG AGCCCCCCTC 000400 000401 AGCCATGTGG AATGGCCCAC AGCCAAGCCA TTGAGAGACA AGTCCATGGG AGACAAATTA GCTCATGCAG CTGAGATGTC 000480 000481 CTGGAGATTT TCCACAGCAC CACTTGGCCA GTGCCTAGAC AAGAGGCCAT CTTTGAAGAA GTAAACAAGT ACCATACACT 000560 000561 AAAGGGATGA CAGAACAACG AAACAAAAGG CTTCCGAGGC GATCCGGCAA CATCAGTCTT CAGCCGCTAA GCCAAGAAGA 000640 000641 TCTGGGAAGG AGTCAATCAG AGAGCCTTGG GCCAGAGTTC CAGGGGCTGT GGAAGTGGCT GCCAGGGTGT GGTGACGCAA 000720 000721 CCTGTAGTCC CAGCACTTCG GGAGGCCGAG GTGGCAGATC ACTCGAGCTC AGGAGTTCAA GAGCAGCCTG GCAAAATCCC 000800 000801 GTGACTCCAG AAGTATGAAA ATTAGCCGGG CGTGGTGGCG CACACCTGTA GTCCTAGCTA CTTGGGAGGC TGAGGTGGGA 000880 000881 GGATTGCGTG AGCTCGGGAG GTTAAGGCTG CAGTGAGCTG AGATCGCACC ACCACACTGC GGTCTGGGTG ACAGAGTGAG 000960 000961 ATCCTGTCTC AAAAAACAAA ATAAAATATA ACAAAACTGG TATAGACATT CATATGTAGG TTTTTGTATG GATTTGGTAT 001040 001041 GATTTTTATT GTTAAAGTTT AGTTTTTATG TTTTAGAGTT ATATATATAT ATGAATCATT TAATTTGTAT GCTTATGTGT 001120 001121 TTGGCTCCTT TTCCTCAGCA TAATGTTTTA AGATTCCTCT ATGAATCAGT TGCATATATC AGGAGTTTTT TCTTATAGTT 001200 001201 CAGTAATATT CCATTATGTG AATATAGTAT AATTTCTTTA TCTCTTCAGC TGTTAATGGA CATTTAGGGT GTTCAGTTTG 001280 001281 GGGATATTTG AAATGTTATG AACATTTTTG TACAGATCTT ATGATACATA CATTTTTATT TTTCTTATCA GAATGATATT 001360 001361 ACTGAGTCAT GTGATATTTT TATTTTTAAC ATTATGTAAA CTGTTTTAAA TAGAACAATT GTTTTCCAAA GTAGCTGTGC 001440 001441 TATTTATACC TTCAGTCAAA ATATACAAAA GTTTCTTGTT ACTGCACATA ATCTCCAACA GAAAGGACTT ATGGTAAATC 001520 001521 TTTAACAAAT TTTAGTCATT CTACTCCCTG TTGGTGGTAT CTTTTTGTGG TATTTTTGAA AGAAATTGAC TTTTATTGAG 001600 001601 ATATGATTTA CATATAATTA AATGACCACA TTAAGAGTAC ACTTTGATAA GTTTTGCTAA CTGTACATAT CAATGTAACC 001680 001681 ACCACAATTG AAAATTAGAT CTTTTTTATC TTCTCAAAGT GTTCCTTTAT GCTCTTCTGT AGACAATCTT CCCCAGTCCT 001760 001761 CAACACAGGC ACCAATGGAT ATGAATTCAG TCATTGTCGA CTGGTGTTCT GCCTGTCCTA GATGTCACGT AAATGGATTC 001840 001841 AAATAGATGT GTGCTCTTGT GTCTGACTCC TTTTGTTCAG CGTGGTGCTT TTGAGATTTA TCTGTGTCAT TTGGGGTATC 001920 001921 AGTAATTCAT ATCTTTTATT TCCAACTAGG GTTGTGTGAT TATACCACAA TGTCTTTTGC AAATTAGTTG TTTCATTTTA 002000 002001 TATATTTTAT ATGTATCAGC AGTTTATGAG TTATAAATAA CTTTTCTTTA TAAATTACCC AGTTTCAGGT AGTTCTTTGG 002080 002081 TGGTGTTTTC CTGTTGCTCT CCGTTCTAAC ACCTGATATT GTTGGTCTTA CTTTTAGCCA TTTTAGTACT AGATGCTCCC 002160 002161 CGACTCACGA TGGGGTTATG CCCCAATAAA TCCATTGTTA AGTTGAAAAT ATCACAAGTT GAAAATGCAT TTTTAATACA 002240 002241 CTTTAACTAT CAAACGTCAT AGCTTAGCCT AGCCTACCTT AAACAGGCTC ACAACACTTA CATTATTCTA CACTTGAGCA 002320 002321 AAATCATCTG GCAACACAGC AAACTGTAGA GTATCTCTTG TTTACTCTGG TGATCTTGTG GCTGACTGGA AGCCTTAGCT 002400 002401 CCCTGCCACT GTCCAACATC CCAAGAGGGT TTTCTACTGC TTTCTACTGA ATGTGTATTG CTTTTGCACC ATTTTAAAGT 002480 002481 AAAAAAAGTT ATATGTCAAA TCATCAAAAG TTGTTTTGAT GAGATTTTCT GTTTGTGTAG TAATATTTCA CTTTAGTTAT 002560 002561 AATTTCTGTA TACCTGACAG CCAATTATAT TGTGTATGTT TATATTTATT TACTTATTTC ATACCTTCTT GTATGAAATT 002640 002641 GTTGTCCAAA TTTTTTGTCC AGTTTCTAAA TCACAGTTTA CTTTCTCATT ATTAATATGT TTTTTATTTT TATTTTTTAT 002720 002721 TATTTTTGTT TTTAGACGGA GTCTCTTCTC TGTCGCCCAG GCTCGAGTGC AGTGGCGCAA TCTCTGCTCA CTGCAAGCTC 002800 002801 CGCCTCCTGG GTTCACGCCA TTCTCCTGCC TCAGCCTCCC GAGTAGCTGG GACTACAGGC GCCCGCCACC ACACCTGGCT 002880 002881 AAGTTTTGTA TTTTTTTAGT AGAGACGGGG TTTCACCGTG GTCTACATCT CCTGACCTCG TGATCTGCCC GCCTCGGCCT 002960 002961 CCCAAAGTGC TGGGATTACA GGCGTGAGCC ACCGCACCCG GCCAAGTTTT TTCTTTTGTA AAATTTGAAT ATATAAGTCC 003040 003041 CATATAAGGT CAATTTATTC TTTTTTCTCG CATGGTCAGT GCTATACAAG ATGATAAAGA TATATGCCTA CCTTTTCTTT 003120 003121 TGTTAAGTTT ATATTTCAGC TCATATGTTA AATCTATAAT CCATTTTGAG TTAATTTTGT AGATGGGGTG AGGTAAGAAT 003200 003201 AGATACACAA CTTTTAGGCT GATATTCAGT TGTCCTAGCA CTAGTTTATT GAAGATACTT TTTTCCCCAT TAAATGTCCT 003280 003281 TGAACTTTTT CAAAAAAGCA ATTGACTATA TGTGTTTGGG TGTTGATACA GTTTGAGTCT GTGTCCCCAC CCAAATCATG 003360 003361 TCAAATTGAA ATCCCCAATG TTGGAGGTGG GGCCTGGTGG GGAGTGATTG GTTCATGGGG ACAGATTTTC CCTTTGGTGT 003440 003441 TGTTGTTATG ACAGCGAGTG AGTTATGAGA TCTGGTTGTT CAAAAGTGTG TAACACCTCC CCACTCTCTC TTCCTCCTGC 003520 003521 TCTGGCCATG TAAGACGTGA CTGCTTGCCC TTCACCTTCC GTCATGGTTG AAAGTTTCCT GAGGTCTCCC CAAACATGCT 003600 003601 TCCCATACAG CTTCCCAACT GTGAACAAAT GAAATCTCTT TTCTTTATAA ATTACCCAGT TTCAGGTAGT TCTTTACAGT 003680 003681 AGTGAGGGAA CAGACTAATA CAGTTATATC CTGTTCCATC TTTTTTCTAA TGCTTTGCTG CATTGTCTTA TAACACAGCT 003760 003761 TTATAATCTT AAAATCATAA CCTGTAGGCC CTCAAAATCT TTTCTTTTTA AAAATTATTT TGGCTATTGA AGGTCCTTTG 003840 003841 TGTTTCCGTA TAAATTTGAC AATTGTCTGG TTGATTTCCT CAAAAATTCT TTTGGCTTCC AAAATTTGAA AGCAGCCTAA 003920 003921 GTGTTATCAA GAATTGAATG GATAAATAAA ATGCAGTACA GATACACAAT GGAGTACTAT TCAGCAATAG AAAGAATGAA 004000 004001 ATCCTGTCAT TTGCAACAAC ATGGATGGAA CTGGAGGTCA TTATGTTAAG TGAAATAAGC CATACACAGA AAGACAAACT 004080 004081 TCATATATTC TCACTTTTTT GCGAGAGCTA AAAATTAAAA CAATTGAACT CATGGAGATG GAGAATAGAT TGATGGTTAC 004160 004161 CAGAGGCTTG GAAGGATAGT GGGAGTGGGG AATGTGGATG GTTAATGGGT ACAAAAATAC AGGTTTATAG GGTTAATACC 004240 004241 TGTTGATACA ACAACATGGT AGCTACAGCC AACAATAATT TATCATACAT TTAAAAATAA CCAAAACAGT ATAATTGAAA 004320 004321 TATTTGTAAC ACAAGGAAAA TGATAAGTAC CTGAGGTGAC GGGTACCCTA TTTACCCTGA TGTGATTATT ACACATTGTA 004400 004401 TGTCTGTATC AAAATATCTC AGGTACTGAT AAATGCATAC ACCTACTATG TACCCATAAA AATCAAAAAT TAAAAATTAA 004480 004481 AC |
Predicted Small Protein
Name | NONHSAT081595_smProtein_566:817 |
Length | 84 |
Molecular weight | 9081.9926 |
Aromaticity | 0.0481927710843 |
Instability index | 109.991566265 |
Isoelectric point | 9.48565673828 |
Runs | 13 |
Runs residual | 0.0165997322624 |
Runs probability | 0.0344258285434 |
Amino acid sequence | MTEQRNKRLPRRSGNISLQPLSQEDLGRSQSESLGPEFQGLWKWLPGCGDATCSPSTSGG RGGRSLELRSSRAAWQNPVTPEV |
Secondary structure | LLHHHLLLLLLLLLLEEELLLLHHHLLLLLLLLLLHHHHHHHHHLLLLLLLLLLLLLLLL LLLEEEEEELLHHHHLLLLLLLL |
PRMN | - |
PiMo | - |