NONHSAT080753
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT080753 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intergenic |
Length |
2942 nt |
Genomic location |
chr20-:61141520..61145916 |
Exon number |
5 |
Exons |
61141520..61142574,61142913..61144065,61144748..61144909,61145034..61145207,61145519..61145916 |
Genome context |
|
Sequence |
000001 AGCAGTCTGC AGGCCTGGGC AGGCGGCTCT GTAAAGGATG CGGGTGCTTT GTGGTGGTGA GAGAGAGGGT ATGCAGCAGA 000080
000081 CGTGGCCATA AATCACCCTC CTCACGGCAG CCCCACACCC ACGGACCAGG GCACGGGCAC AGGGCCATCT CCTTCCAGGA 000160 000161 GAAGGGCTGG TGTGGGTGGC CAGATCTGAC AGCCCCCAGG CCGTAGGACA GAGCCAGAAG ACAGAGCAGT TCCCCCGTTT 000240 000241 ACCCATAGCA CCAGCCTCAC AGTAACAGCC GGCACACAGC ACTTAGGCTG CCTGGTGTTC CAGAAGCTTC TGCAGGGGCT 000320 000321 CTATGCTGCA ctcaaggcat ccctaagagg agagcatttt gctgtcccca ctttacggag aaggaacgtg ggctcaggGT 000400 000401 GGTTTAAGGC GTGAATGAAT GAAGGAGCAA GCAGTAAGCC CCGACAGCAA GGCCACCACA GCCCTCGCCC CACAGGGACG 000480 000481 CCTGAGCAAG GACCCAAGCA GGGGACAAGC AGGCTCACCC CGCCCTTGCG GGGCTGACCA CGAGGCCCCG TCCGGTGGAA 000560 000561 CACGCCATGA CGcttcaGGA GGCTCATGTA GCTGGCGCCG TATGGGACAG CGGGGGAGAG AGAAAATGCA CAGCCCAGGG 000640 000641 AATGTGGAGA CAGGCCCAGC GCCAGGCATG GGGGCCGGAA GGAGCAGCCG GGGAGCAGGG GGCAGGGCCT GGAGTCCCGC 000720 000721 CTTGCAGGTC AGAGATCTGA ACCTGCCCCA GCCCCAGGAC TCTGAGTGCA GCAAGAGGGG AGCCGGGCTG GAGAGTGGGG 000800 000801 AGCACGGAGA CTGTGGCCTG GATGGTGCCA GAGCAAACAG GAGAGAGGCT GCCCAACGCA GAGGCTGCAG CACAGACCAG 000880 000881 AGGGTCCCGG GGCTGACTGG GTGGGGGCAG CTCCCAGCGA GAGGCCCCTG GGATTTGGGT AAGTAGAGGC ACATGCAGAC 000960 000961 TCTGGCCACA GGGCACCTCG CGCACGAGGG GAGTTCACCA CACAAGCTGA GCGGAGGGCG GACGCAGGAG AGCAGCGGTT 001040 001041 TCTCGGAAGC CAAGGGCGGT CATGGAGCCC CACGCCACAG CGCTTCCCAC GGGGCCACAC CATCCGGTCT GCGGAGGGGG 001120 001121 CTGCATTGCC GGGAAGGACC ATCTGATTCT GGATTCCAGC CTCACCCTGG GCCACCGCTG AGTGTCCCAA GTGGCCCCTT 001200 001201 AGCCCCCAGG GCCAGGCGGC ATCCCAATCC CCTAGGGATG TCTGTGCTCA GAATGTGGCA CACACGCCCC GGCAGGGCCA 001280 001281 TCCTCCTCCT CCTGCACCCG CCACAGCCGT GGATTCGGGG TCTCTATCGT GGGCAGAAAT TCACACAGTC AAGGTGAGGG 001360 001361 TCCCAGGAGC AGCTGTGACC AGGCCCCGGC TGCCAGGGAG AGGGGGTCTT CAGCCGACGG GGCAGACACC CTGAGATGGA 001440 001441 CCCTTGTCCA GGGGAGGGCC CTGCCACCCA CAATTCCTTG GCATTCCTGC ACCAGCAGGA CGGGCTGAGG GAGGCGCCTC 001520 001521 ACCAGTGCCA GCGCCCAGCA TCACTGTGCC CCGGTGGAGG GGGAGGCCCT TCCGAGCCTG GGCCTGGgtg tggatgaggg 001600 001601 caggtctctc acctctctga cctcagcttc ctcaactggg aaggggggcc acagcacccc cttaggggtg atgaggaAGT 001680 001681 GGGAGCTCAG GGAGGACCCC GGGCAGGGCT GCCTCCTCAC CTCTCTTCGG CCTTTGGACA CTGGAGCTCA GAGGACCAAG 001760 001761 TGAATGAATG AATGACTCGA TCAATCAACT GATCCATGAA TCCATGGACC CCTGAACAGC TGGACAGCTG GGCTGTGGGC 001840 001841 AGGACAGGGG ACTCTGGCTG AAGCCGCGTT CATATGTGTT CAGCTTTAGG CCTCCACTGT GCCCGGACCA GCGGCCCACT 001920 001921 CAGTGAGTCG AGTGTGCACC TGGCACCCCT CTTTCTGGAA ATCCACGAAC AATGGGCTCC CAGCAGAGGA CTGAGGCTGA 002000 002001 GCAGGCCACT TCCCTGGAGC TGACCCCACA GCTGTGTAGG TACAGGGTGG CCGTGAACAC TTAGGGCTCT CTCGGGCTGT 002080 002081 GCGCTTCTTG TTCACTGCAA GGAGCAGGGT GTTGGCTCCT GACCAAGCCC TGTCACTGCT GCCCAGCCAC ACGTGGGGCC 002160 002161 CCTTCACCCA CCCCTGACCA CCTCATGCAg gtgaagccac tgtggaaaca gcctggcagt cccttgaaaa atgaagtcat 002240 002241 aaaccccagc aattgcactc ctgggcCTCT GACAGAGCTT GCACgtcccc tccaaagctc gtgttaagct gtgagcccca 002320 002321 gtgccggagg tggggcctgg tgtgtttggg ttctgggggt ggatccctca tggctgggtg ccatgaaccc actcaccaca 002400 002401 gtgagttctc acgagatctg gttgttgaga agtgtgtcat acctccccca caactctctg tcttttgttc cggctctggc 002480 002481 aatgtaacaa gcctgctcct ccttcgcctt ctgccatgac tgtaagcttt ctgagggctg accagaagcc cagcagatgc 002560 002561 cagcaccatg cttcctatac agcctgcaga accgtgagcc agctaaacct ctcctcataa atcaccgagc cccaggttta 002640 002641 tctttacagc aatgcaagac ctgactaata caGCACCAGC TCCCCAaaat aaaaagaaat attcaaacaa ataagcgcac 002720 002721 agaagtgttc ccagcagcac tattcacagc agccaaaagg cggaggagcc acaggcttgt cagctgatga cagataaaga 002800 002801 aagcatggcc tgtcatccca gcactttggg aggccgaggt gggtggatca cctgaggttg ggagttcaag accagcctgg 002880 002881 ccaacatggt gaaacccagt ctctactaaa aatataaaaa ttagctgggt gtgatgatga gc |
Predicted Small Protein
Name | NONHSAT080753_smProtein_566:739 |
Length | 58 |
Molecular weight | 5963.5553 |
Aromaticity | 0.0526315789474 |
Instability index | 52.3456140351 |
Isoelectric point | 5.62481689453 |
Runs | 9 |
Runs residual | 0.00394736842105 |
Runs probability | 0.0245932206717 |
Amino acid sequence | MTLQEAHVAGAVWDSGGERKCTAQGMWRQAQRQAWGPEGAAGEQGAGPGVPPCRSEI |
Secondary structure | LLHHHHHHLLEEELLLLLEEELHHHHHHHHHHHHLLLLLLLLLLLLLLLLLLLLLLL |
PRMN | - |
PiMo | - |