NONHSAT080200
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT080200 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
sense |
Length |
865 nt |
Genomic location |
chr20+:47855465..47860610 |
Exon number |
7 |
Exons |
47855465..47855592,47855774..47855875,47858431..47858524,47858621..47858743,47859132..47859218,47860167..47860240,47860354..47860610 |
Genome context |
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Sequence |
000001 TTTTTATTTT CTCCCATTGA GATGTCATCC TCAAATTCCG GGACAAGATT GAGAAAATGG AGAAAGATGT GTATGCAGTT 000080
000081 CTGCAGCTAG AGGCGGAGGA AAAAGAGATG CAGCAGTCAG AAGCCCAGTC AATACAGCAA AGCGGCTCCT GGAGAAGGGG 000160 000161 AAGGAGGCAG TGGTCCAAGA GCCCGAGAGG AGCTGGTTCC AGACCAAAGA AGAGAGGAAG AAGGAGAAAA TGCCAAAGCT 000240 000241 CTGCAGGAAT TTGACTTGGC CTTAAGAGGA AAGAAGAAAA GGAAGAAGTT TATGAAGGAT GCCAAAAAAA AGGGGGAGAT 000320 000321 GACACAGAGG AAAGGTCTCA GTTTGAAATC CTCAAGGCGC AGATGTTTGC TGAACGGCTA GCGAAGAGGA ATCGCAGAGC 000400 000401 CAAGCGGGCC CGAGCAATGC CCGAGGAGGA GCCAGTGAGA GGTCCTGCAA GAAGCAAAAG CAGGGGAAGA AATCTGTATT 000480 000481 TGATGAAGAA CTCACCAACA CAAGCAAGAA GGCCCTGAAA CAGTATCGAG CTGGCCTTCC TTTGAAGAAA GGAAACAGTT 000560 000561 GGGCTTGCCC CACCAGAGAC GAGGAGGAAA CTTTAAATCT AAATCCAGTA CAAGAGGAGG AAGTAGCTGT CGTGGCCTGA 000640 000641 AGAAATTCAT GGGGGCAGCC CTTAAATCCC TTCCCTGTGG GAAGTCATCC TGGCTGGTCT GTCTTTTCTC CATTTGTTTA 000720 000721 AAAAAAAAAC AAAAACAAAA AACAACACTT TGGTGTGGTG GTATGGTACG TAGCTATTTT CCTAAGCATG TCTGTCAATC 000800 000801 TCCCTTCTTG CTGATTAGCT TTCATATGAC TATATTAAAT GGAAGTATTT TTGGGAAAAG AGAAA |
Predicted Small Protein
Name | NONHSAT080200_smProtein_56:253 |
Length | 66 |
Molecular weight | 7491.3548 |
Aromaticity | 0.0461538461538 |
Instability index | 107.155384615 |
Isoelectric point | 10.9185180664 |
Runs | 7 |
Runs residual | 0.0425961538462 |
Runs probability | 0.0165669871553 |
Amino acid sequence | MEKDVYAVLQLEAEEKEMQQSEAQSIQQSGSWRRGRRQWSKSPRGAGSRPKKRGRRRKCQ SSAGI |
Secondary structure | LLLLLHHHHHHHHHHHHHHHHHHHHHHHLLLEEELLEEELLLLLLLLLLLLLLLLLLLLL LLLLL |
PRMN | - |
PiMo | - |