NONHSAT079920
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT079920 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
sense |
Length |
2418 nt |
Genomic location |
chr20+:43514344..43537160 |
Exon number |
3 |
Exons |
43514344..43514527,43534642..43534737,43535023..43537160 |
Genome context |
|
Sequence |
000001 GCGGAAGTGG AGCTAccgcc accgccgccg ccgattccgg agccggggta gtcgccgccg ccgccgccgc tgcagccact 000080
000081 gcaggcaccg ctgccgccgc cTGAGTAGTG GGCTTAGGAA GGAAGAGGTC ATCTCGCTCG GAGCTTCGCT CGGAAGGGTC 000160 000161 TTTGTTCCCT GCAGCCCTCC CACGGCATTT GATGAAGCAA TTGCTGAATT GGATACGCTG AATGAAGAGT CTTATAAAGA 000240 000241 CAGCACTCTG ATCATGCAGT TACTTAGGGA CAATCTCACT CTGTGGACAT CGGAAAACCA GGGAGACGAA GGAGACGCTG 000320 000321 GGGAGGGAGA GAACTAATGT TTCTCGTGCT TTGTGATCTG TTCAGTGTCA CTCTGTACCC TCAACATATA TCCCTTGTGC 000400 000401 GATaaaaaaa aaaaaaaaaa aaaaaagaga aTCGTACGTC GACTTTCGAT TTTTCACAGC CTCAGCCTAG GAAAAATGGT 000480 000481 TCATGGGATA AACAGCTGGT ATTTGTATCT AAAACTCAGA TTGGTCACAT AAATGCCACG GCATTCCGAA GTTTTGATTT 000560 000561 TGATTAACAT TGACAGGATT ACTGTGTGTT TAATTTTTTA AAAACTGAAC ACTGTGATTA TGGGGTTTTG TAATTTAGCA 000640 000641 GAACTCTTAC TGGTAGAAAA AATAGACCTG AATTATGTGT AACTTTTTGG AAGGTTTAAT CTGATATCAA AATAATCATT 000720 000721 GAAATACAAT TCCATTGTAA AGTTGTACAG AAAGTTATAG AGATTATATT GTGATGCTGG AACTTGGAGT GAGACACACA 000800 000801 TCATTTGGCA TTTGAGTTGA ATGGTAATTC ACAGTAATGC TGCCGTTGTT CGGGACTTAA AGACACTTGA CCTGTTTGGG 000880 000881 CTGTTGCCAC TTAAAAGTTC ATGACCACAA ATGTCCACAG TGTCTTCCTC TGAGGAAACT CGAATCCTGA AATGGAAATT 000960 000961 CTTTGTGGCA GATAACTGGC TTATGACACC TTGAAAAGTT CAAGTGCTCA TATAACACAC CACACTGAAC CCCCTTTCCT 001040 001041 ACAGCAATAT GTTCACTATG TTACCAATTT GCAACTTGTG CTTCAATAGT GGAATCTACT TTCATTGTTA ACACTGAGCT 001120 001121 AAAGAAAAAA AGCCGTGTGT TTTATGAATG ACCTTATCTG TTTCCTGGAT AATACCTTTA AGAATAATGT CCTGAgtcag 001200 001201 gcgtggtggt gcgtgcatct agtcccaact atttgggagg ctgaggcagg aggatcgctt gagcccagga gtttaaagct 001280 001281 gcagtgccct gtggttgcac ctgtgaataa ctgcactcca gcctgggcaa catagcgaga cctcatctcc aaaaaagaaa 001360 001361 acaaaaaaca aaaaaaGGAA TGATGTTCTG TAGAGATGGC CTTTCACTTG AGGAGTACTC AGTTTTCAGG TTCTTCCTAG 001440 001441 CTCGGGGCTT TTAAATTTTG AAATCTAAAC ATTCTTTCCC ACCATCCTTT TTGACTGTTG ACCTTGGTTT TCTCTTCTAA 001520 001521 GTTTCTGTCC CTCTGCTTCC TTACTTTTTT TCCTTTTTGA ATTCTATCTT TATCTGTCTT TTGTTCACTT TTTAATGCTA 001600 001601 TATATGGGCA GGGGTGAGAG ACATTACTGA GCACCTTGGT GAGCAAGCCT GGCTTTAAAG ATTGGAGAAG AGCTTCTGGC 001680 001681 ACCAGAACCC TGTCTTCCTC CAGTTCTCAA CACGGTGTTG CTCTTCAGTC ATACCGGAAT CTGAATCAAA AAAGTATTTT 001760 001761 TAAATATCCA TGATTTCTCC CTGTATTGAG GCTAGCCCTG ATCATGCTTT TTGTGCCTGT CACCAGGTCT CCCAAGTGCA 001840 001841 CTCATCCAGG TCAGTGCTCA GATGTGTTTA AGGAGACCCT ATATTCAGGG AAGTTGCGTG AACACTGCAG TGGGGAGAAT 001920 001921 TGAGAATAGT CAGGCCTATC AGTCTCACAG AATCACCCCT CTACCTTTGA TATTCCACTT AGCTGTAGAG TCCATCTGTT 002000 002001 TGTCCATCTG CTGAAATGAG AAAAGAAAAA TTTATGCACT GATTTAAAAC AAACCaaaaa aaaagaaaaa aacaaaaaaa 002080 002081 aaaaTCCCTC CTTTCTAGCT GAACAAAAAT GTGCAGTTAA TACTTGGCGC TTGAAAATGC AGTAGTGAAT GTGGAACCAA 002160 002161 GCCTGTCTGT ATATCTGGTA GCTCTTTTCT TGCTTTGTTT TTTCTTACCA GTATTCTGCC TAACGTTTGC TTCTGTGATG 002240 002241 GTTATATTGC CTAGCAAGCA CACCCGTGGT TGTGAAAATA GTATAGCAAA AAAGAAAAAT CCCCGGTTAT TGATGTACTA 002320 002321 GATTTGTGTA TGTCTTTTAA ACAGTTCTAG TTTCACCTTA CACAGAATAA TCAGGAAAAG TGTAAAAATT CAAAAGTGAA 002400 002401 ATAAAAATTT TATCAGTT |
Predicted Small Protein
Name | NONHSAT079920_smProtein_1769:1870 |
Length | 34 |
Molecular weight | 3599.1305 |
Aromaticity | 0.030303030303 |
Instability index | 98.0727272727 |
Isoelectric point | 6.79229736328 |
Runs | 7 |
Runs residual | 0.0279973649539 |
Runs probability | 0.0327806798395 |
Amino acid sequence | MISPCIEASPDHAFCACHQVSQVHSSRSVLRCV |
Secondary structure | LLLLLLLLLLLHHHHLLLEEEEEELLLLEEEEL |
PRMN | - |
PiMo | - |