NONHSAT078918

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Annotated Information

Transcriptomic Nomeclature

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Function

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Regulation

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Expression

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Allelic Information and Variation

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Evolution

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Labs working on this lncRNA

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Basic Information

Transcript ID

NONHSAT078918

Source

NONCODE4.0

Same with

,

Classification

intronic(S)

Length

6571 nt

Genomic location

chr20+:21128344..21134889

Exon number

1

Exons

21128344..21134889

Genome context

Sequence
000001 GTTCTTTCTA AGGCACAGAA TAGTGTGTGA TAAAGTGCCA GTCACGTGGG ACAAACATGA GCAATGAGAA GAAAGAAGAT 000080
000081 TCTGCTTCCT GTGAATTGAG TAATCCCAGC CCTGGTGGAG GAGGTGGTGT GTGAGCTGGC ATAGAAGGAT GTGCAGGATG 000160
000161 CCAGTCAGTG GTAGAAAATG AGCTTGGAAA GCTACCTTGT GGGATTTGGT ACCTGGAACT ATGGTCCCAG GCTAAGAACT 000240
000241 GAGATTTCCT CCTGGAATTT GTGTGTGTGT GTGTGTGTGT GTGTGTGTGT GTGTGTGTGG CAGCAGATGA AGGAAGGACT 000320
000321 TGTGAGCAGA GCAGTCACAT CCCATGTGTG CAGCTGCGGG AAGATGAGGC TGGCAGTGCT GTGCAGGATG AGCCTGGGGA 000400
000401 GGAGTACGTG GAACTGAGGA AATCAGGCTC CATTCAGACA GGAGGAATTA ACAGAATGGA GGACCTGTAT TGGGGATGGC 000480
000481 CATTGAGGTG GAAAACACTA ACAAAGGGGA GAGGATCTAT CAAATTGGTG ATCATTCTGA ATTATAAAAA GGTATTTTTT 000560
000561 AAGTGGCTAT ACAGCTTTCA ACCATAGGCA GTAACTTGGA TGCCAAGAAA AGTCATCAAG TGGTGTGTGT CCATTTTTTA 000640
000641 AATATAAAAA CTCTGGCTCA GTTTTGGTGT AGGACATCTA TTATTTGCTT GCATCCAGTA GTTGCTCTTT AGAATCATAC 000720
000721 ATTCGCTTAG AAGGATTAAT AGTTAGTCTG TTCATCTGCC ATGCTTGTTT CCACTATTAA TTTACTTAGT CAGCTTACAA 000800
000801 AAAATGTGTC TTACCAAAAA GGCACATTTC AAGCCCCACT CAGATCCTCA CAAATTTTAC TATAGTAATT CTTCACCTCT 000880
000881 ATTATATATA TTGTTATTTT TTATTTTGGG GGCAAACTCT GTTTCCAGAC ATGTTCTTCT GGTTGAAGAA CGGTGACTAG 000960
000961 AGAATATACA TAAAAACACA TAAAAATGTA TGTCCTCAAG AAAGATTGAG ATGGCGTTTT TGAATGACAG TATACATTTG 001040
001041 GGGATAGGGT TGTAAGGTTT CTTTGAACTA TTATGCTGTG AAATATATTC TACTAGAAAT AGAAGCAAAC TGATCATACT 001120
001121 CTGTCAGGGA TGGATAGGTG TGGAGGACCA GGGAATTTCA TCACAGAGCT GAAGGCTTGT TGAGGAGCTT CACTTCCACT 001200
001201 GTGGTAACCC TCCCTGCAAG GATCAGGTGG GAGAATGGTT ATAAAGGTGT TATTCCCACT TTTAATACTG GTAGTAACAA 001280
001281 TGGGTAATAA TCACTGCACT TTTACTTTGC TAGGTGCTGC GTTAACACTT TATGTGTATC AACTCATTTA ATCTTCTCAA 001360
001361 CAACCCTGGA AGTAGAGGAT ATTGTTGTCC CCATTTTATA GTAAGGCTCA GAAAATTTAG TTAACTTGCC GAAAACTACA 001440
001441 CAACCAGGCA GAACCAATAT TCAAACCCAG ACCACTGGAC TTCAGCATCC ATGCTGTTAA CCACCTTGCA GCAATGCCCT 001520
001521 CTAAGGTAGT ATGGGTAAAA GATAGTATGG GTAGCTCTTC AAAAGTTGGA GAAATTCCTG GTGAAATAAA AACAACTTTA 001600
001601 AATACTGCAT TTTTACCTAG ACTTGAGGGA GGAAATGGTC TTCCTTGGTG CTGTAGTATT TGAGCTGAAT CAGGTGAGCC 001680
001681 ATGGCAAGCT GAGGACCCGC CCCCTAAACT GCCCATGTTT GCAATAAAAG AAGCGTCCGT TTCGGTTGGC TTTGTTGGGC 001760
001761 AGAAGAAATG CCTTACAACT CGACTGAAGA AGAACTTGAA GGGAGAAAGC CTGCACGGCC ACAGGAGGCA GCTGTGTGCC 001840
001841 TGGTATGCAG GGATGAGCTC TGCAGTGGCT TTAGCCACGG ATCTGAGCAT GTGTCCGAGG TGCTCCCAGG AGCAGTGCCA 001920
001921 CTGCAGGAGA GGCACACGAC AGAGAAGACA GCACCCCAGT ATGAGATGAT GGAAAGGGTT CTTCCATTCC AGATGCGTTC 002000
002001 CCAGGATCTG AGCACCATTC ATAAGACCAA GGCAGCCACT GTAGGACCTG GCTCATCTCC AAGGAGTAAA GGGACCAGAT 002080
002081 ACCTTGTGTG GGGGAAACTT GATTGAAATA AATATTGCAG CAAGGGAGAA AGGAATCCTA AAACTATACT GAAAGAGCAA 002160
002161 GTGACTTAGG TTGGAATCCC CTGGGAAGGA CCCTAACACA AGGATTTGAG TGTAAGTAGT TTATATGGGA GGTGGTCCCA 002240
002241 GGAAGCACAG ATAGAAAAGA GAGGAAGATG GCATGGGGAA GGGAAAGCGG GCTGTAAGAG TGTGTGATTG AGTGGGTTAT 002320
002321 CACTCATAGC ACCTGGTGCT CAGTCCCATT GGGGAACCTT GGATGACTGT GTAGGGCATG CCTCAGGGAT ATCCCATTCA 002400
002401 AGGAGTAGGA AAGGGAGGTT TTTCCCCTCC AGGTCTGTCA CTACCAGAGT GCCACGCCTG GCTCCTCTTC TGGTGCTGCA 002480
002481 CAGCAGCTGA GAGAAACGCT TGGGCCAAGA GGCACAGGTG CTTAGAGGAG GACACTGGGC AGGTACTGGA ATGATGAGGG 002560
002561 CCCAGGGATA TGGGCCCGCC CTCTCACACC TGCTAAGGGA AATAACAGTG GGTGGAGGAG GTAGAGGTTA TTCCTTTGAG 002640
002641 TTCTCTGTAT AAGCCCGATT TCTTATCCTT ATTAGCCCAC AGTGCCACCT TCACCAGCAG CCTCCTTGAA TCACTGCTCA 002720
002721 ACTATAAACA ACACAAAAAT CTCCCTAGAC GGGGGCTCTG AGCAGTTGCC TTCACGGGGA ACGTGGCCCT CGGTTCTGCC 002800
002801 ATTCTCAAAG TTATGGCTGT ACTTGATTTA GACAGAGCCA TGACAAGTCA AAAAGTAGCC TCTCTGTGTT CAGCTGGACC 002880
002881 TTTTTATATT AACTGATTTC TTATTTATAT GTGTTTGTAT TCAGAAAACA ATTAGAAATT AACCCGAATT ACACAAATTG 002960
002961 TATTTCAAGC CCTGGCCCTA AAACTACATC TGCAGATCTG CAGACCTTTT TTTCAAGAGA GGGTAGAACA TGCTCTTCTC 003040
003041 TCCCAGCTCA CTTGACAGTA AGCTTCCACA TGGCAGGGCC CAGCCCCTTC TTGCCTGCCA CACCACCCCA CAGCACCCTG 003120
003121 CACCTGGTGA GTGATGATAA CCTGCTGACC TGAAAGGAGG AAGAGGGGTG GGCTGCTCTC TGAGTGAAGG GTACTCCCCA 003200
003201 TTTCATGTGG TGTTCGAGGG CAGATGACAT TTGGACTCTC CACTCCTGCT TTTGGGGGTG CCTTCCAAGG AGCTGGTGGG 003280
003281 GAGTGTGGCT CTGATGGACA GCTCCCCCAT GGGTCTTTCA GGCACTATTC TAAGGATTTT ATATAATATA GGCGTATAGA 003360
003361 AATACACATT GGTTACAGCA ACCTTACAAA ATAAGAACTA TTTTAATACC CATTTTACAG ATTAAGAAAT GGGAGCTCAA 003440
003441 ATAAGTAACT TAATTTCTTA GTCACACAGC TAGTAAGTGG CATACTGGTC TGGAGTCTTA ATAAATACAT CAGTCTGCTT 003520
003521 TTCAGTTACT GGAAGAAAGG ATTTACTTAG GAAAATGGTG GGAGAGGGCC TTTTTTAAAG GTATTAGCTA CTCTCTCATA 003600
003601 GTCAAGAAGG AAAGACAGTA TTTTTATAAC TTACCCATTG TGGGGACATT TGGCTAGCCA GCTGTCTTCC TTTGCTCTTC 003680
003681 TCTGTGGCAG TATTCTGTGG CAAGTGTATT ATGTGACAGA GGCTCTAACA AGTGAGAAAA TCGTATTCAC AGATAGAGGT 003760
003761 GCCTATCGTG TAGTGGAATG AGGGGGAAGA GAAAAAAAGT GGATGAGAAG GGGAAAAGAA ACGTAAGTCA ATTTAACAAG 003840
003841 AAAAAGATAA ATTTTTGTGG GGAAACACTG TTTCTTTTCT CCTTTTTGAT AGTAGAAAAG GATTTATAGA AGCTCCATAG 003920
003921 GAGAACGAGT ATTGAGTTCT TGTTCTTTAG AAGACTTTCC AAATTCATAT AGTCCATGAA ATACTGTATT ATTAGAAAAA 004000
004001 GATATACTTC ATGCAGTCTT AAAAAAAAAG TTAGTGCCTA GAACTTTCTT GGAAAAGAAT CTGGTAGTAA CAGTCACGAT 004080
004081 GAATACACAC ATATGCTTTG TGCCAGCAGT CCCACTTTTG GTAATCTGTG CCCTAGAAAG AAAATCTTTT GTTCAAAACG 004160
004161 GCAAAAATAT AGTCTGCGTG TTGCAACATT ATTTGTAGCA GCAAAAACAC AGAAGCAGCC TGAATGAGCA GCTGCAGAGG 004240
004241 AGAGGCTGAG CTAGGGAGAG AGAGCACCCT CATGATCAAG TATTCTGCAT ATGGCGCCCA GAATCCAGTG CGTTCCTCAT 004320
004321 GATCTGGGCA GCGTCCAAGG AATATTATTA AGAGAGCAAA GCAGGTTGCG GAGAGTTGCT TACAACATGC TCTCACTTTG 004400
004401 TACAAGTGGC CAAACCTTAC CAGCAAGGAA TTAGTTGTCC TGGGTTTGAA GGAAGGTGTG AATAGGCATC CTAACTGGTT 004480
004481 TGCTTCAGTT ACTTCATGGA GGGGAGAGGG AGGCAATGAG CTGGGGAAAA TAAGTAACTT GTTCTTTACA TCCCTTTGCC 004560
004561 TTATGTCTCA TTTCTATAAT TTAATAATTT TTATACGATT TTAAAAATTA AACCTATGAA GAAGGGATGA GCAGGTGGTT 004640
004641 AGTTCATTTT AGGAAGAAGG AGCCTGCTTG TGGTTGAGAC TGTTCTTTTA ATTGTGGGGG AGTGTGAGTT GCTTACGTCC 004720
004721 TTACTCAAAT CCCTCAGAAT TATAGAAAAT TGGAGGTGCC TTTCTATCCC TCTGATGTAG TTCTGCATAT TTCTTTTGTG 004800
004801 AATGGAGATC TCTAAGAGAG TTTTATCCTG AGTTACCCTA TTTGGGGATG GTGGAGCATA TACAGGGGAT ATTGAATTGT 004880
004881 ATTATAAAAA GAAAGGGCTG TTACCTTGAC AGTTTTAGGT ATTTGTTAAG CCTCTTAGGA AGTGTTACTT GAAAACCATA 004960
004961 ACTTAACTTT GTATTACTTT GACCAAGACA ATTGCTTAGG CCTACGGATG TGAAACAGTG GTTTTGGGGT GTTCTGTTTA 005040
005041 TTTTGTGAAA GTTACCTGCT GTCACTATTT TGGAATGCCG AATTTCTCTT GAAGCTCATA CCTGCTTTTC TCTTACTCTT 005120
005121 CCATTTACCC CACATAGACT AGGTTTTATT TATCATATAC AAGTTCTATT CAGGGTCTAT CTTAGTGAGA TCAGATTTTG 005200
005201 AGTTATTTGA AGTTAGAAAT TAGGCACAGG CTTCAGATTC ACTATTAGGG ATTTTTATGT TTGTTTTTAA AAGCTGTGGT 005280
005281 TCAGTAATGC AATTTGAGTT TGACTGACTC AGTTTTGAAT ATTGTAGCAT AAGAGGTTTG CATTGGAGTC CTGGTATCTG 005360
005361 AGTTTAAATC CTGGCTCTGT GAACATGGAC AAGTTGCTCA ACCTGGCTAA GTCTCATAAG AGTAGGGCTA ATAATAATGA 005440
005441 TTGTTTTCAT AATATAAATC TCTTAGCTCC TCCTTGTCAC CTCGTACATG CTTGATAAAT GTTCCCTGCT CTTGATGCCA 005520
005521 CCGTCACCAC CATCATTACC ATTGTTGTTC TCCACTAGGG TAGCCTTACT TTGATCCTGG ATTCTTGCCA CTTATTTAAG 005600
005601 ATAGTGAAGA GGTTGGTGTG GGGGTAGGGA GACTACCTAT GAATTGAAGA AATAGGAGGT AATAGCACTT GATGGTGACA 005680
005681 ATTCGTAAAG ATTGATTTTG TGCAAGATAA TTTACAGAAT ACACCATTAA AGCCTAATTT AACAGATATA TCTTAAATTT 005760
005761 AGATAGTTCC AATAACTGTT GAATTTCATG GCCAGAGATA TCTCTCGATG GTCTAAGTTG TGAGATTTTG GTGATGACTA 005840
005841 CATTTGTCAT GGTGGCTACA TGTAAGAAGA AGACTTAAAA ATCACAATGG CATACTGTAT TAGTTTGCTA GGGCTGCCAT 005920
005921 AACAAAATAC CACAAACTGG GTGGCTTAAA CAACAGAAAT GTGTTTTTTG AAGTTCTGGA GGCTGGAAGT CCAAGATCAA 006000
006001 GGTGCCAACA GGGTCGCTTT CTGGTGAGGC CTTTCTCCTT GAGTCATAGA AGGGGCCTTC TCACTGTGTC CTCATGTGCC 006080
006081 TTTTCTCTCT GTGCATGAAC TGAGAGATCA TTGGTATCTC TTCCTCTTAT AAGGACACCA ATTCTATTGG ATTAAGGTCC 006160
006161 CACCATTATG ACATAATTTA ACCTTCATTA CCTCCTTTAA GGCCCTATCC TTTAAGCCAC AGTGGGGATT GGGACTTCAA 006240
006241 CATATGAATT GGACACAATT CAGTGTGTGA TACGTGTATC ATGTAAAATA TGTATAATAA TTTTATAATA AACATATAAC 006320
006321 TTCAGGATTG TTGGATGTAA ATTATTGTTA ATGGATTTTT AAAAATCTTC TCAATGTGAC TTAAGAACTT GCTTACATAG 006400
006401 AAATTAAAAA CAATAATTGT ACCATGTGAG AAGCTGAAAA TTTGGTCTAA CAGCTTCATT TCTGTTCTGC ATTTAACTTG 006480
006481 CTGCTTCTCA TTCCCTTGTC TGTGAAGATA ATAAGAAGAA GAAAAATAAA GATTTCCTTA GCATTTTGTA AAAAAAAAAA 006560
006561 AAAAAAAAAC A
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Predicted Small Protein

Name NONHSAT078918_smProtein_803:955
Length 51
Molecular weight 5848.7968
Aromaticity 0.14
Instability index 51.9602
Isoelectric point 9.36016845703
Runs 7
Runs residual 0.0246783625731
Runs probability 0.0713402478108
Amino acid sequence MCLTKKAHFKPHSDPHKFYYSNSSPLLYILLFFILGANSVSRHVLLVEER
Secondary structure LLLLLLLLLLLLLLLLLEEEELLLHHHHHHHHHHHLLLLLLLEEEEEEEL
PRMN LLLLLLLLLLLLLLLLLLLLLLLHHHHHHHHHHHHHHHHHHLLLLLLLLL
PiMo oooooooooooooooooooooooTTTTTTTTTTTTTTTTTTiiiiiiiii