NONHSAT078776
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT078776 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
sense |
Length |
1321 nt |
Genomic location |
chr20-:17922244..17924266 |
Exon number |
2 |
Exons |
17922244..17923051,17923754..17924266 |
Genome context |
|
Sequence |
000001 ctagtgctgc tgaacgttgt ttgcatgaac ctggtatgtc ttcttttgag aaGCATTTTC ACAAGCCATT GGTGAAGTAT 000080
000081 GTGGCTCACC ACCACCCATA CTCCAGCCCT GTTCCCAGTC ACTGGTACCT AGAGGGTGAG AGTGAGGCTG CTCATCAACG 000160 000161 TGTTCTCCAA GTCATAAGCT GCTGCTCTCC CACTCACGAT GCTTGGTGAT TCAGTGATGT TTTCCACTTA AAGACAGTGA 000240 000241 TAGCTGTATC ACCACAGTTA ATAGATGTCT GATGTGTCCC AGTCACAGAG ATAATACAAA TGTGAGGAAA TAATGCTGGT 000320 000321 GCCTGAAAGC ATTGGAGACC ATTTGTAAGA ATGCCATTTG GTAGTTAAAG TGAACATGAA AATTGTTTAG TTTTTCTTGG 000400 000401 TTTCATAAAC ATTTTTTCTT CCTGTAGAAC TGATAAATTT CAAACGGAAG AGAGTGGCAG CATTTAGAAA GAATCTAATT 000480 000481 GAAATGTCTG AACTGGAAAT AAAACATGCC AGGAACAATG TCTCCCTTTT GCAGAGCTGT ATTGACTTGT TCAAGAATAA 000560 000561 CTGATATGCC TTCACTCAGA AGAAAAGAAA TGAATGTGAA AGAAAGCCAA GCATCACTTG CACTTAAATC ATTACCACGG 000640 000641 AAGATATATT AGCTTCAACT TTAGTTTAAA ATTATGTGAA TAAATATTTT GATTTCTACA AATCTTAACA TTTAACCATG 000720 000721 TTGGTTTAAA AATATTATTG CTTGCTACTT GGACATAACT AATTTTTCCT TGTGCATTTA ATACCTCTGG GCAGAATCCA 000800 000801 AATACTGGGT TCTCCCGTAG TTCGTCTTTA GTTACTAAGA AAGGGTGTAG GACACATTAG CCTTCTGGAA ACAAGTAGAA 000880 000881 GCCATCACCT GGCCCATGTC CCTACAAACC CATGATTGTC AGGGAGGTGC CAGTTACAGC AGGTGATTCA GCTACTTGAG 000960 000961 GTCGGTAACA GACCTTCCAT TCCTCACTGA AGGTGGGGTT TGTGTTTTTG TTTTGCCCTG TTACTCCACT GGTAGTCATC 001040 001041 TGGTGTTTGT ACTATAACAA CAGCAAGAAA ATCTCATTTA TCTTTATATA CTCTTTGCAC CTCCTTTTTT TAGTCGAGAT 001120 001121 ATAAATATTT GAGGGGAGAG AAATATCTAC AGGTATATAT GGAAACAAAT AATGTGGTCT GCTTTATAAG ATGGCCAGAT 001200 001201 CTACATTAGG AAAAGTATAA GCCCCCTCCC TAATGGCCGC TGGGGGGTGA GGGCGGTGTG TTGTATGTCT TTGGGTGTTT 001280 001281 GTTTTTTTAT AAAGCATATA ATAAAATAAT CGTGCTACTA A |
Predicted Small Protein
Name | NONHSAT078776_smProtein_35:208 |
Length | 58 |
Molecular weight | 6610.3495 |
Aromaticity | 0.122807017544 |
Instability index | 61.9140350877 |
Isoelectric point | 6.68670654297 |
Runs | 10 |
Runs residual | 0.0214912280702 |
Runs probability | 0.0431549196254 |
Amino acid sequence | MSSFEKHFHKPLVKYVAHHHPYSSPVPSHWYLEGESEAAHQRVLQVISCCSPTHDAW |
Secondary structure | LLLHHHHLLLLHHHHHHLLLLLLLLLLLLLEELLLLHHHHHHHHHEEEELLLLLLLL |
PRMN | - |
PiMo | - |