NONHSAT078220

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Annotated Information

Transcriptomic Nomeclature

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Function

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Regulation

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Expression

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Allelic Information and Variation

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Evolution

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Labs working on this lncRNA

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Basic Information

Transcript ID

NONHSAT078220

Source

NONCODE4.0

Same with

,

Classification

intergenic

Length

1869 nt

Genomic location

chr20+:3154345..3156213

Exon number

1

Exons

3154345..3156213

Genome context

Sequence
000001 GTCGCTGCGC CCCGCCCGCG CGTGGGACCC CTCAGCCTCA CCCTCTCTAG GGCGCAGCAA GTCCGCCGCG AGCCCCTCTG 000080
000081 CTCATCGCTC GTTACCCCCC AGGCCCTTGG GCTTGGGCTC AGGCCCAGTC GTTCCTCTGC AACAAATCCA ATGGAACCGC 000160
000161 GCCCTCCCTG AATCCCACGT CTAGGAAGAG GAGGAGGAGC CCCTCTTGCT TGGGGGAAGG GGCTCCCGAC TCGGAGCCCC 000240
000241 GAGCCCCATT CCTCTCCCGC GCCAGCTCTT CGGGACGCGG CCTCCCAGCG GACGCCCTGA GACCTTGCAA GTCCGCTAGG 000320
000321 GAGGGGTCGG GACGAGCCGT CGCGGGTGGA TCCGCCCGGC CGAGCAACGA CCCGCCCGGG CGCGAGGACC ACGGGCTGTC 000400
000401 GTGCGGGAGG CGTCGAGGGG CAGTAAACTC CGTTCGTGAC CAAACGGAGA CGATTTGAAA CTTGCTGCTC ACACTGGATC 000480
000481 ACCGTCTGGA AGGTGCGACG GGGAAAAAAT ACACATTACA CTCCAGCAGG ATTGAACGCT TTCACCCTGT GCCCCGCGCC 000560
000561 TGGCGTAACG CGTGGCCCCA GACCACACGC TGTAACCCGG GGTGAGAGGG AGTGAGGTGG GACTTCGTAC CGGACCCGGA 000640
000641 GCGCCGGCCT CGCCCGCGCG GGCAGCGTTC ACTGTgggga gtgctcactc agcctagggc ggcccgggag gactgccggg 000720
000721 aggagggagt cggccttgaa ttgaggcctc agccttgaat agggtaggga ggcaagccta gccgagagtt tagcactagc 000800
000801 aaaagcctgg aggcACCAGG GTCTGCCCTA AGAACTGCAG CGCCTCTGCT CTGGCTGGGA TTTAACGCAT TACGTCTCTG 000880
000881 CTGTTTATAG GTGTTGTGTT TGGTCTTACG ACTTCGTATT CTATAGTTTT TATTTATTCC TGTTTTCTGA ATTTTCCCAC 000960
000961 ATTTGCTTTT ATCTTCTATC GTGATTTTCA AGGCAGAAAG TATTTTTAAT TCTTCTCGCG GCTGCCTTTA GATTTATCAA 001040
001041 ATGAAAATAG TTTACATTTC ACACATTAGT AAAGTCAGTG ACAAATAATT CGTTTTTATA TTCCCCCATG AGAAATTTTG 001120
001121 TGTGCTTTTC TGCCTCCTAC CTGCCGCCCT CACTACTTAT ATTTGTCCAC TTAATCAGGA CGACAGACCT AACTTTTGTT 001200
001201 TACACTTTTT TTTTAAGCCA CAACATTCTT TTTCAATCCT TGTTTTTGGC TTTTGCCaac tctgtttaat tggtttcaat 001280
001281 gttactgccg gttttttgtg ctctaatttt tctattcctc atttggaccc atctctcaca tgactggtga tttcagggag 001360
001361 gactctggaa tgttgtattt cctaagcctt tgccttaggt gagaatgcct ttataatgat ttcctgttta taggattctt 001440
001441 gagtctcaag ctttccccct caaaactctt gtctttattt cattgtcttc tggcactgaa aatgcaaagc tgggtttgtc 001520
001521 tgtttaaggt cagcagtttg cttggtgctt gcaagggttt ttctttaccc tcaaaagtca aacattttgc cagtataaat 001600
001601 caatatgggc cttatctatt aattttccag aaacaaaaga ggtcttcttt gtagcttaga aaagttttct tcCTGTCCAT 001680
001681 TCTGTGAAAA GATTTGGGTT TTTTTCTTTC CTCTCCTCTA AAACTATCAC ATTGGATCAC CAATGTCAAA TAAatctgtt 001760
001761 tgttttctct gcaccctggg agactatatc aagtttttct tcaccattac ggatttaatt ttcttcagag ccaagagtac 001840
001841 tgtttatttt ctccaataag acatttgat
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Predicted Small Protein

Name NONHSAT078220_smProtein_1742:1858
Length 39
Molecular weight 4509.3112
Aromaticity 0.236842105263
Instability index 40.4710526316
Isoelectric point 8.76812744141
Runs 8
Runs residual 0.0379155124654
Runs probability 0.0290143084261
Amino acid sequence MSNKSVCFLCTLGDYIKFFFTITDLIFFRAKSTVYFLQ
Secondary structure LLLLEEEEEELLLLHHHHHHHHHHHHHHEELLEEEEEL
PRMN LLLLLLLLLLLLHHHHHHHHHHHHHHHHHHHLLLLLLL
PiMo iiiiiiiiiiiiTTTTTTTTTTTTTTTTTTTooooooo