NONHSAT077319
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT077319 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intergenic |
Length |
2032 nt |
Genomic location |
chr2-:231850640..231860763 |
Exon number |
6 |
Exons |
231850640..231850825,231851699..231852894,231856484..231856754,231857049..231857117,231859992..231860100,231860563..231860763 |
Genome context |
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Sequence |
000001 CAGGGCTTCA AGGGACAGTC TTCTCTGCAG ACACCAGCCT GGTGTCCTCC TTCATCCCAG GCTGCCAGGC TAGGCAGGGG 000080
000081 ACAGCGGCTG CCCTGGTCCT CACAGCCCTG GCTACGGGGC TGGTGACAGC CAGATCCTCA TGCTTCTGCG ACCTGAGCGC 000160 000161 TGCCTTCAGA CACCTCTCTG CTGGCGTGTT CCTGGGTCCA TGATGGAAGA AGGAAAAGTA TTTTTAAAAG ACAATCTGAA 000240 000241 GCTCATACTG TGACTGCAAC ATAAAATGTG TTCACCTGAG GAGACTGCTT TCATCGCCAG TGTGTCACAG ATGGTGGAAA 000320 000321 CCTCAGAAGG CCACAGTCCA GAGTAGGGGC TTAATGCAAG CTGCTGGAAC TGAATAAAGA AGGTCTCTGA TGGTTCTGGT 000400 000401 TTCCTGGGCA CCTAGAATAA GTGTGTCACC ATTTGTCCTG AAGCTGACTT Ctctgagctg gatggcaccc tggacatcaa 000480 000481 ccagcccttc accttcacgt cacacaggag ggacactggt ccatagagag gatgcctgct ctggtcacca gctggagagt 000560 000561 ggcagacctt gggtacctga cctttggact ctgccacaca gagcacttcc tcagtccctc ctgcTGCCCC TGGCAGGGTG 000640 000641 GAGCTGGCAG ggcagctgat ccaggaccgt ccacttccaa gccagcagga ggatggaaaa gcagaatgga ggggaaacaa 000720 000721 cctcctttgc agggcgtgac tcggaagttg gacacatcat ttccagccac attccatgga ccagaattag ccctgtgacc 000800 000801 aactctggct gccagaaaat ctgggaaata cagtctctgc ttgggcgatc aGGCAGGCAG TTATATCTTT GGGAACATCT 000880 000881 CTCACCCCCT GGGAACACCT GAGCAGAAAC TGAAGGACAT TTAACAGATT CTCCTTTGTG TCTAATAAGA ATTGCCCCCA 000960 000961 TCAGTCGGGG ctgtcctagg tgctgggtac ataggtcatc tatacacaac ccagcaatgg agagcacacc attcccaggc 001040 001041 tgcagatgca gaaactgtgg ctcggagagt taagcgtctt gttcagattc agtcagctgg tagatggcag gtctgggatt 001120 001121 gagacccagg cctggctgGT CCTGCCAGGA CACAGTATCA CAGCTTTGAC TGGGAGCTTC TTTTTGTTTA CATATATTTT 001200 001201 TTATGCTCAA TGTGCATTCC TTTTGAAATA CACAGAAAAG GGAAAGAAGC CGGAGTCCTG CCTTGTGTAG GAGGGATAAG 001280 001281 TTAGAGGTGT GCACCGGGAT AAATCTGCCT CCCGCGctgg ccctggccct ggccctggcc ctggccctgg ccctgatcct 001360 001361 gCTCCTGATT CTGGTCCTTG GGGCCTGGGC GGCGATTCCC GGCGCTGGCT GAGCGTCACC GGCCACCAGA GGGCGCTGCC 001440 001441 GGGCTACCGG TCCGGTCGCC CGGGGATCAC AGCCTCAGCG GACAGGAAAT GATCAACAGC TTCTCCTCTC GGATCCACGT 001520 001521 GGACTCAAGG AATCTCCGGG GGGCAGGACA GGTGCAGAGC CGAGTGCAAA GGTGGAATTC TATTCCCAAA GCACATCCCG 001600 001601 CGCCCCTTTC CTCTGCAAAG TCCCGGAACC GCGTGACTCC GGATGAGTTA TCGGGGCTGG AACCGAGGGT TCAGCCCCCT 001680 001681 GCGCCTCTGT GTGTCCCGGT CCCTTTCCTC CAAGTAGACA GGAGGCATCT CCTCATCGGC TCAGTTCACA TTCCTCCAGG 001760 001761 GGCTCAAAGG GGACCCAGTC CCTGTCTTGG GACACCAAGT CAGGCAGACT CCAGGAGAGA GGAAGGAAGA TGATTCCCGC 001840 001841 GCTCAGgtgg gcgggtcctg ctccctctgt tgaagacctg aagacaaaga ttgaccctca cccttcacct cccacctctt 001920 001921 cctcaccttg gaaaagaaaa acattcctga gaggggggat ttgtcagcag aaggctttgg gactagaact gcagcatcag 002000 002001 ctcttcctgg ttccccagcg cccaggccta cc |
Predicted Small Protein
Name | NONHSAT077319_smProtein_389:658 |
Length | 90 |
Molecular weight | 9838.189 |
Aromaticity | 0.0898876404494 |
Instability index | 63.4898876404 |
Isoelectric point | 9.48712158203 |
Runs | 11 |
Runs residual | 0.0196078431373 |
Runs probability | 0.0307125307126 |
Amino acid sequence | MVLVSWAPRISVSPFVLKLTSLSWMAPWTSTSPSPSRHTGGTLVHREDACSGHQLESGRP WVPDLWTLPHRALPQSLLLPLAGWSWQGS |
Secondary structure | LEEEEELLLEEELLEEEEEELLLLLLLLLLLLLLLLLLLLLEEEEELLLLLLLLLLLLLL LLLLLLLLLLLLLLHHHLLLLLLLLLLLL |
PRMN | - |
PiMo | - |