NONHSAT076830

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Annotated Information

Transcriptomic Nomeclature

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Function

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Regulation

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Expression

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Allelic Information and Variation

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Evolution

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Labs working on this lncRNA

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References

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Basic Information

Transcript ID

NONHSAT076830

Source

NONCODE4.0

Same with

,

Classification

intergenic

Length

7388 nt

Genomic location

chr2+:217661116..217668503

Exon number

1

Exons

217661116..217668503

Genome context

Sequence
000001 ttctgcagaa agagagtgcc ttttccccct accgtattct tcgctgcaac tcagggaagg attctcagtt tccctacttg 000080
000081 ggctacgtgt cACTGCTGCC TGAACACAGA CCACTAGGCT TTGTTCGTCC TTAGTCCTAC GCCCACTCCT CCAAGTAGCA 000160
000161 GAAGAAAGAC GATGGGAATG TTTGCCGAAC AGACAACACC CAAGAAGTAC TCTAGCAGGC CTAAAACCTA AGCAGGTGAT 000240
000241 GTAATCCTTT TTTCTATTAT CTCCAGAGCC CATCAGCATA GTTGGTGTCT ACTCTTCCTT CCTATGGCtg atgggtataa 000320
000321 gccaatcatt gctgttcctc ttctcattga cagtgattgg tttaggtaca agcatgtgat gtgatcctgg ccaatatgat 000400
000401 gtaaggagat aacaactaga agagttctca atccttaaga agcttaatct cttttgctgg ccactatcca gcctgtaagg 000480
000481 gatgcctgga actgtcggac ccagcctgca gctgtaagga cctggtcaag gtcaaggttg acatgctgag gatggcacag 000560
000561 cagagtggag ccaggtcctt gaggacctgg ttgagctgtt gagttaacca accctgaagc caccatctcc agggcatttt 000640
000641 ttttttttta atatgagaga gtaaattttt cacctatttt aagccagtgg ttttcaaagt ctggtctctg gaccagaaac 000720
000721 gccaatcagc atcccctggg aacttgttag aaatgcaaat tcttgagtct tacccagaac tacttaatta aaatctctgg 000800
000801 gaggggggct cagctgtttg ccttttaaca agcccttcag gtacatgcta aagtttgaga gccaccattt aagccattgg 000880
000881 agtcaagatt ggaggaggat ttgattctgt ttacttgctg ctgaaatatt ctaagtgGAA TAGTCTTAAC AGAAAGGGTc 000960
000961 tggaaagaat ctagaatcat tccaattcta ccccttcatt tcgtacccgt gactgagttt agggaggAAC TGTATGCGAT 001040
001041 GTTTGCTATG ATGCTGCTCC TGAGGGCTGG GCCCTTTCTC TCTTGAAGTT CTTATTCTCA TTTTTATCAT TATCATCAAT 001120
001121 AAATCTTTAC TTTCTGCATA GAGTGCATAG GGTGAGTCCC ACAGATGCTT TACCTGATGC CTTTGACCTC AAGATGCCTG 001200
001201 TACCAGTTAG GAAACAAACT GGGTGATTAG AAGTGAGCTT AATGAAAGTA ATAAAAAGAT TGTTCACGgg acaggtgtga 001280
001281 tggctcacac ctgtaatctc agtactttgg gaggccgagg cgggtggatc atgaggtcag aagatcgaga ccagcctggc 001360
001361 caacatggtg aaaccccgtc tctactaaaa acacacaaaa aattagttga gcctggtggc Catccctgga acctgcgaac 001440
001441 gtgaccttat tcggaaaagg ggtctttgca gatatcatta agttaaggat cttgagatca ggagattact ctggtttatc 001520
001521 caagtgggcc ttaaatctaa tgacaaatgt cttcgtaaat gaaagagagg gattttagac agaagagaag acagaagagg 001600
001601 aggaggcaat gtgaccacag agatagagat tggtgtgatg aggccacaag acaaggaatg ctgacagcca ccagaagctg 001680
001681 ggagaggcag agaactgatc ctgttgatcc cagagcctcc agagggagcg tgaccctgcc aataccttga ttccagactt 001760
001761 ctgtcctcct ggaactatga gagaacatat tactgttgtt tttaacccac caagtttgca ggaatttatt atagcagcca 001840
001841 caggaaacta atGTATAGGT CCATAGAGAG GACGATATGC CAGGAGCTGT AAGGAGCCCA GACAACCTGG AACAATGCTg 001920
001921 caaggagaga atgagggaat caattcccag cttccccttt cttcattctc tctgacttcc agatagtgcc tcccactggc 002000
002001 caaatccaaa tgaaaactgt agggcaaggg actccccttg atagggcccc taggggttgg cctcctgagg ctcagtagga 002080
002081 tggagaaggt tggacttgga gggacaggtg gaaCTGTCTG GCATGCCCCC CATTGCCCGA AAAGCACAAC TGAACTGTTA 002160
002161 GCATTGAACA GCCATGGAAG GATGAGGTGC AAACATTTCC ATGAGATATA TGTGGCAGGA ATTAGTGCTT TGTGTAGTCA 002240
002241 AGAGGAAAAT AAATTGTCTG AAAAAGCTGG TGGAAGAAGT AGAAAGTTAA GTAATGTTTG AGTAGCGGGA GAAAGATGGT 002320
002321 TGGATGATCC AGGGATGAGA AAGTGATTCC TTATATATGT ATATATTTGT GCTTGGAAGA TAGCTAGAGA TGATGGTGGG 002400
002401 ATAAGAGTAT TAGATATGTG TGAACAGCAT GTGCTTATGA TGTTGGGGAA ATCAGGTGGG AAGAGGGAGG AACTGGGGAA 002480
002481 CACTAACCTC AAGTAGAACT ATGACATTTT TTTCAAATTT CTGGCATTGT GGCAATCAAC AATAGGGTCA CTGCTGCCCC 002560
002561 ATGTAGAGCC CTAACTATCC CTTCTACTGA CAGGCGAGGA CAGCCCCATA AGATCTAGCC TCAAAGTCTA GGAGTACTGC 002640
002641 TTCCCAGAAA GGTAGTGAGT GAGTGTTGAA GTCAGTCCTA TGTCCTTTGA ATAAGAAGAC ACAGGGCTCA GAGGATAGAA 002720
002721 GTTGGGCTGG ATGAATTACA GGGACCTGTG GTCATCATTC TAGAAGCAAT TTGCTAGGCA GGGTCTGGAG GTGTTGGACT 002800
002801 CAAACCCATC ACAGCCACTG TCCTATGAGA TCCTAGGAAA AGTGTTTTGT TTTTCCTGTG TCTCTCTCAG GAAAGTGGCC 002880
002881 ACAATGAGAT ACTTTCTATC TATCTTGAAG AGACTTTGAT AAAAACAAAT AATGGTAAAT AAGCCAGGGG AAATAAATAA 002960
002961 CAATCACTAA TTTATTAAAT TTTCAAAAAT CATCTAATTA CAAAGCAGGG AAGAGAAAAG AAAAGGCTAG GGAGGTGGAA 003040
003041 GATACAGAAA CAATGTCAGT GGGCTAAGAA GAGACAAAAG CATTCACATT TATCAGAAGA GATAACCTTG CCCCCTCTTG 003120
003121 CACTTGTGCT CAGGAAATTT TGCTTCTCTT TGCCAGATAA TCCAAGACGG AGGAGAAGCA TCTCCATGGC ACCTCACTCT 003200
003201 GATTTGCGAG GATTTGGCCA GAGAAACTGT TCTCAAGAGT GTGAATTAGG TGGCAGCTAC TATTTTATGG TACCTCGCTA 003280
003281 TCCACTTTGT AAGGTACGAG TAACAACAAC AACAAGCAAA CCAAATTACC AAAGCACAAA AAAAAATGTG TTCAGTCAGT 003360
003361 TACAAAATGC TCCTCAGCCA GAGAAGTGGG CATCTGACTC CTGGAGGGGC CCTTCAGCCT GTGGAGTATT CTTGTGTGTT 003440
003441 GCAGGTTTCA CAGTGAGCAG AGGCTGTCTC TGAAATGGGC AGAGAACCAG TGGGTTGTAG TAGTTTGCAT ATGGGGAGAA 003520
003521 AGGGAGAGAA AGAGAGAGAG ACTCtgtgtg tgtgtgtgtg tgtgtgtgtg tggatgtgtg GCTGAATGTC ATCTGTGTGT 003600
003601 CTGCACGCAA CATTGTGCCA ATGAAGTTGG ACATGCATCT ATGTGTGGGA TGGGGTCCTG GCCTTGGCAA CAAGGGGGTG 003680
003681 TACGTGTGGG TGTGAGTGAC AGCAGACTCA GAGTCCAGGC CCAGGGCCTC TGGGGACTGT CACCTGCAGG ACTCATCATA 003760
003761 GAGGAGACCA GGTGCTTGGA GTGTCCCCAA AGCAATACAG AGTGCATGGT CATGAGTTTG AAAAATATTC CTGTGAGAGA 003840
003841 TATAAATAAA GCCTCTAAGC CCAAAGCCAG AGTTTTCGAA AGCCAGCCTT ACACACAAGA TAATTTATAG TTGCTGGTGT 003920
003921 CCCTTCCCAT GCATGACTCA GCTCTCCTAG CCCAAGTAGG CCCAGCCTGC TCCAGTAACC TTTGCTGAAA GGGAAGAGTT 004000
004001 GAAGCAAACT CCAAGAAGCC CAATGATCCA ACCACCCAGC TCCCGGACTA GCTCCTGCTG AGCTCCCTTC CTCTGTTCCC 004080
004081 TTTGGGCAAA CTCCAACCAT GACATGGATG AACAGATCCT GGAAACTGAG AAACCAGAGA CTTGGGTACT CCCAGCTGGC 004160
004161 TGGTCCTTGG AAGTCTATTA AACTGGTTCC CGTATACCTT CAGGATCTTG GCGGATTCTG CTACCCATAC AATGGGTATT 004240
004241 GGCTCAAACA CCCTTCCCAC CACTCCCCAG CCTGCCTTCC AGCCATTGGG AGGCAGCAAA ATCAGAACAA AGACCTGCTT 004320
004321 GAAGCTAGAG AGTTTTTCTC AGTCTCAGAG ACTCTTGAGC CCAACAGGAA GAATAAAAAT GAGAGCACTT TTACCTTTTA 004400
004401 TTTAAAAGAC AGTATATACC CATGTCAAGT GTCAAAAATA TGGCTAAAAA GAGGGATAAA TAGTGACATG CTTAAACATT 004480
004481 GTGGTGAATT TGTGGGGGGA GGCAGCCAGC AAGGAACAGG GTTAGTTTTT TCAATTTTCT CCCTATATTC CTCACTTCCC 004560
004561 ACCCACCTTC TTTCGTTATA TTTTTAGCAG ACTCTTTGGC CAACCACGTC CAAAGAGACA GATGCAAGTA CAGAGAGTGC 004640
004641 ATACTGAAAC CAAAGGGTGT TTCTTTTTCT TCTTTTTTTC TTAAAAACCT TCCAGGAGTG TGGAAAGGAC TGGAAGTGCT 004720
004721 CGAAGGTCTT TTTAGCCACA TGCCTTACCC CAACTGGGAT CTGGAACATT TTTATGCCAA GGCCCATATG CCTGATTGTC 004800
004801 CAAGTATAGG GGAAAAAAAT ATCATTCAGG GCTTTAAAAA ATAGTTTAGC TTTTTGATTA AACTGCTAAA CAGCCTTGAA 004880
004881 TAAAATATTT TTTTTGCTGC TCTAGCAGAT GAATTTGTGC AACTGGCCTA ATTTTaatac aggatccaac acataatagg 004960
004961 tatgtaataa ttgttgaata gatggatAAT TCTTTAACCC TGTAATGAAG TGTCCTCATT CAACATGCAT TTATTAAGCC 005040
005041 ACTCTTTGGG TGTGTACAAG TGTGTATCct caaaggcttc ttcctgcaat aacattctat aattctgtga CCTATATTCT 005120
005121 GAGTAAGTCA TATGCTGATT CTTTGATTAA TCTGGGGGAA GGAAGTTTCA AGTTAGCCAA GTTAAAACAC ACATACACGC 005200
005201 TACACTCCAA ACCTACACAA ACCTACTTCT TAAATGATAG AAAGCGGAGG ACCTTGGTAG CTGCATAGCT AAAACCACAG 005280
005281 AATTTTGCCT GGTTTGGCCT GGCCTTGTTG GAAGTGCACA GAGCCTACTC TAGATCCCAT AGCTCAGTCT TTTGAAGTTC 005360
005361 TTCTTTTGTT CCTTGCCTCC TCTTCTTTCT GATCTTTCCA TTCAGGGGTG GTCATCTTCC ACATTCTCAG TTTCTGAAAG 005440
005441 CCCCCTGTTC TCCTAGTCAC CCCTGTCTTT TCCCATCTTA AAAATAACAA AGGCTGTGTG TCATTCATAT GTGCGGATTG 005520
005521 ATCTGCACAT GTGGATGAAT TTGATTTAGA Gatccttgca tgttattgga aggtaacaga ctaacagaga ggcgaagaga 005600
005601 ctcccaagat cacacagcta ttgaatagca gCAATCTAGC CCATTGTTCT GATCTGAAAT TGATCTATAA TTCTCAAGTG 005680
005681 AGAGCTACAG ATACAATTCC ACAAGCCTGC CAATTAGGAG ACTTGAGGTG GCCTTGAGGC TGAGTCAAGC CAATCTTTCT 005760
005761 GCCCTTTTGA TAGCTGGTCA CTCCCCTTGG ATCTATACTA TTTGCTTCAG CTTCTAGTGA TTTCTTCTAC TCTGTTTGGG 005840
005841 ATATTCACAC TGTATTAGGA ATTTATAGAC CTGGATGGGC CCACCAGATG TCATCTGCTT TCTGAAGTTC TCAATCACCA 005920
005921 GGCAGAATTC CAGCCCCAGC AATCCTTTGT TCTGAAGGAT ATAGGGAGGC CCTTCAGTAA GAAAATCAGT CTGAATTTCT 006000
006001 GTTTTTCCCT CCAGAATGAC AGTGGCCCCT TCTGTTGGGT TTGCAACATT TACTCTGGAA GCCCCCACTG CACGCTTACC 006080
006081 CTAATCATCT GCAGGTCTTG GCTGAGCATT TAGAGATTCA GAATACCATA TTGGGTACAA CAAGGGTCTC CTGGAGCCAA 006160
006161 AAAGATACAA ACTTTCAATC CCACTGGTTA GGGTTGGAAG GAAGACAAAT ACACAGAAGA TTCTGTTGTT CCGATGAAAG 006240
006241 GGATCTCTGT GTCTGCACAG CGATGACAGG GAATGGTGTT TGGTCTCAAA CAGCACGTTT CTGACCCGAT TGACTTGGAA 006320
006321 GATGGGCTGC TCTTGCATTG CGGCCCATGC CAAGGTCACG GGGACACATG ACCACTGCAG GGAAGGAAGA TCTGTATTCT 006400
006401 CTGGCGAAAA TTCACATGAG TGGGGAAGGA GAGGAGGAGG TGGCATGCAG AGAGAGGGGC CATCCCACTT TGCAAATCCC 006480
006481 TCCTCCAGCT TTGTCACTGC TCCCCACCCC TCAAGTTAGA AGCACCAGCA GCATGGGCCA GACCAGGGCC AGCTGATTCT 006560
006561 GTGGCCTGTT TATACCCTGT AACCAGAGCC TGTTCTCAAA GAGGCTGCCT GACAGCTGCA GATGTAAGGG GATGGACCAA 006640
006641 CACTTCCAGA GATTGAGTGA CGCGTGCTGG TGTCCATCTC AGGGGCAGCT TAGCCTGACA ATCTTCTCAA GCCAGGGGAT 006720
006721 GGGAGTGGGA AAAGGTGGAG CAGGCTACCA GTTAGTGCTC ATGGTGGCGG GACCTTGGAG CCTGCTATTG AGCTTGTGTG 006800
006801 CTCCCTCCAG CCCCTAGTCT GCCAATGGGA TTGCTTTCTT CAGGGTCAAG GCAGGTGAAA GAGGAGTTCT GCATGTTTCA 006880
006881 TTGGTTTATT TTTCCCACTC TTTATCTTTG TCATTACAGA AAACAAAAAG AACACATGAT GAGGCTCTGG GTCAGCCAGG 006960
006961 ATTCTAGATT CTGCTGCCAG ACACATCTTA CAAGGGTAGA GTGCTTGTTT CCTCATCCCA ACCCCAAGCT TCTCCTCAAA 007040
007041 GGTCAGCCTT TCTTTCTTCC CCTCAGCTCT GGGAGGCAGT AGCAGGGACC TCCCTCCACT CAGCCCAGCC TGGACTCCCA 007120
007121 GCCAGGAGGC TGGGGCAGTG AACCCCACCG CTAGGGTCTG GTGAGGCTGA AAATTCTTCA AGCCAGGCCA TCTTACAGGC 007200
007201 CTTTCTACAG CTGTGTCCCG ACCCTCTATG CCTCTGCAAT TTCATATCCT AATCCTTTTG GGTCAGGCTC CCTCCACCTT 007280
007281 CATCTTTCTT TTGTGTCTTT CATAAATTGG TCCTGTAGCA GCTGCTCCTG CCCCTGCCCA GCCCCCAGTC GTGGGTGCCC 007360
007361 TGGAGAGTGG GTATACATCG TATCCTGG
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Predicted Small Protein

Name NONHSAT076830_smProtein_3185:3472
Length 96
Molecular weight 10559.929
Aromaticity 0.115789473684
Instability index 52.3536842105
Isoelectric point 9.21514892578
Runs 13
Runs residual 0.00779113137174
Runs probability 0.0453236041471
Amino acid sequence MAPHSDLRGFGQRNCSQECELGGSYYFMVPRYPLCKVRVTTTTSKPNYQSTKKNVFSQLQ
NAPQPEKWASDSWRGPSACGVFLCVAGFTVSRGCL
Secondary structure LLLLLLLLLLLLLLLLLEEELLLEEEEEELLLLEEEEEEEEELLLLLLLLLHHHHHHHHL
LLLLLLLLLLLLLLLLLLEEEEEEEELEEEELLLL
PRMN -
PiMo -