NONHSAT072209
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT072209 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intergenic |
Length |
1692 nt |
Genomic location |
chr2+:89065419..89085430 |
Exon number |
6 |
Exons |
89065419..89065713,89076018..89076090,89082251..89082279,89082370..89082442,89084115..89084143,89084238..89085430 |
Genome context |
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Sequence |
000001 CTGCATTGCT TGTTGTTGCG CTTCGGAGGC GGCGATCCCC GAAGGCGAGC TGAAATACGG CTGGAGCGTT CCCAGGCTAC 000080
000081 AGTTTGTAGC CGACGATTGT GGAAGACTAG GAGCCGGAGA GGTGGCCCAC CCTCAGGGAG CGCTTGTGCT CGGAGGGCTT 000160 000161 CTCATTTCCC CAATACCACA TTAAATCGTC TCATCTGAGG AGGATCCACA GAGCTGTCTT CTATGGTAAT CTGGAGAAAC 000240 000241 TGGAGTACCT TCTGCTCACG TATCATGACA CCAATGAGAG AGACAAGGAG GAAAGCTTAC CCTGAAAGAA GCAGATCCCA 000320 000321 GTTCAAAAGT AGCCATAAGA AGGAAGGATT CACCACCTCC AGGAAAAGTG TCTTCTCAGA AACAACCAGC TGAGAAGGCT 000400 000401 GCAAGTGACG AGAAAGATTC TGTTTCGAAT ATAGCCACAG AAATAAAGGA GGGACCAATA TCTGGGACAG TGTCTTCTCA 000480 000481 GAAACAACCA GCTGAGAAGG CTGCAAGTGA CGAGAAAGAT TCTGTTTCAA ATATAGCCAC AGAAATAAAG GATGGACAAC 000560 000561 AATCTGGGAG ACATAATTTT GCAAAGCAGA TTTAATGTCA TGTTCAGCCA AGATAGACAA GAACTTCTCT TCCCCGAATA 000640 000641 AATCAGCGGG GGACTCTTTG AAGCTGCACA TTCTGATTCA GCAGGCCTGA GATTCTACAT TTGTAGTAAG TTCTCAGGTG 000720 000721 ACACTGATGC TGCTGGTCTT CGACATGAAC TTTGCAGTAA GATTATAGAC TTCCATACAT TGAAATTGGG AAGAAGAAAG 000800 000801 GTTGGAGAGC CATTAAAGAC ATAAGGAGTC AGGGGACAGC ATAATTTTGC TTTAATTCTA CAGCATGTTT TCACCAAGGG 000880 000881 TGGAAGGAGA AAGAGATGAA GTATAGATTT TACAGACGTC ACATCGTATT GCTAAAAACA GATGGAGAAA TGATTGTAAA 000960 000961 AACCCATAAA CGCTGTAGAA CGAGAACTAA GGAGACCATT GATGTAGCAA TGACTTTCCT CAAGGAAGAG GATTGTCAGG 001040 001041 CAGGAAGGAG GGAAAATAAG AAGTTATTTA TGTAATTTTG GGATTTCTTC TAAGGAAACC TGAGTTCAGT TGCATATTCG 001120 001121 AACATTTTCC TAAAAGAAGG TTTGATTTTG GCTGCTTTAG GAACCAGTGG AAGCAGGAAG GAGTACTAGA ACTGGGACAA 001200 001201 GCCACAGTGA CTCATTACTC CTCTTTGTTA CTGTTGGGCA TCAGAGATAT ACATTTTGTT TATATTAGTT ATTCAAATGA 001280 001281 GATAAACATG AATATGCATA TATTGGCTTT GCTTTTCAAT TAGCTAACTT TTGGATAAAA ATAGCAATTT AATGAAAATG 001360 001361 CTTTAGAGAA TAACATGATA TTTTAAACCA GACTATTTTA GAAAGAAAAT AATGGTGAAT TCATTAATTG ACTTTTAAAA 001440 001441 TTCTTATTTT CAATGAATAT TGGAGTGATT TCCAAATGTA AAAGGTTATT CATATCTAAT GCTTGTAGCA ACTTTATTTT 001520 001521 GTATAAGTAT GTCAAATTTA ATCATTTATT ATACTTTTTG ATAAGGTTTA TGTATTATAC TTTGTTGCCA TGAGTGGATG 001600 001601 AAGAACCTTT CTGTAGCCTA AACTAGAGGG CACAACAAAT GTAGGCACAT TATTACACCA CATGGGTTTG AGAAATAAAG 001680 001681 AATATTATAT AC |
Predicted Small Protein
Name | NONHSAT072209_smProtein_551:640 |
Length | 30 |
Molecular weight | 3470.8834 |
Aromaticity | 0.103448275862 |
Instability index | 85.9310344828 |
Isoelectric point | 4.29583740234 |
Runs | 6 |
Runs residual | 0.0073275862069 |
Runs probability | 0.0319731496202 |
Amino acid sequence | MDNNLGDIILQSRFNVMFSQDRQELLFPE |
Secondary structure | LLLLHHHHHHHHHHHEEEELLHHHHLLLL |
PRMN | - |
PiMo | - |