NONHSAT071965
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT071965 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intergenic |
Length |
3791 nt |
Genomic location |
chr2+:85187605..85196649 |
Exon number |
7 |
Exons |
85187605..85187703,85189146..85189860,85190510..85191116,85192111..85192664,85193268..85194399,85195507..85195772,85196231..85196649 |
Genome context |
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Sequence |
000001 ATGAATACCA CAGCTTCCTG ACCTACCCAA ATGGACACCT TTATCTCCAC TGGCAATTTT TCTTTTTTGA CAGAGTCTCA 000080
000081 CTCTGTCTCT CAGGCTGGAG CCATCCAATC TTTACATGTT TTATTAAAAA TAAAAAATGA GGACAGGTGC CATGGCTCAC 000160 000161 GCCTGTAATC CCAGCACTTC GGGAGGCTGA GGTGGGAGGA TCATTTGATG CCAGGAATTT GAGACCAGCA TGAGCAACAT 000240 000241 AGCAAGACCT CAACTCTAAA AAAAAAAAAA AAACTTAAAA TTAGCTGGGC CTGGTGGTAC ATGCCTGTAG GCTCAGCTAC 000320 000321 TCAGGAGAGT GAGGGTGGGA GGATCGCTTG AACCTGGGAG GTCGAGGCTG CAGTGAGCCA TGATCATGCC ACTGTACTCC 000400 000401 AGCCTGGATG ACAGAGCAAG ACCCAGTCTC AAAAAAACAA AAACAATAAT GACATCAGGC TGTACATACA TAATTTAGAA 000480 000481 AAGAATGTTT TGTAACCTGC TTTTTTCACT AAAAACACAT CATATTTCTA GTTCATTACC CATTTTTAGT TGCTGCTTTT 000560 000561 GGTTTGGATA GACAATAATT TATAGGTTTT CAATTTTAAA TATTAAAAAG AACACTGTGA TAAACATTCT TGTGTCTAAA 000640 000641 ATCTTTGCAT CTATCAGTAA TTACTTAAAT AGACTGAGTT GAGCTGGGAT TACTATGGCA AAGAATGGGC AAAAATCTAT 000720 000721 TGCTCTTGAA ACCTACCATA AAATCCCATT TGGAATGCTT GTAACAAGTC ATATTCCTTT CTTGACATCC TCATTATCAA 000800 000801 GTATTATTAA AAGTACTAGG CTGATGACTT TGCTCAATCC AATAGGGGAT ACAAAAACAG CAAAGACATG AAAGAGAAGA 000880 000881 TGATGATAGT GGTATCCCAG AAAATGAGAG GGTAACCAAC AGCACCAAAA GTCAGGCAAT CAGATAAACC AGTTTCTAAG 000960 000961 CTGAGGAAGG GGAGTGACAA TTCTTTCAAG AAGATTGTCC ACAGAGAGAA ACAATAGGGT AATAACCAGG AGTGCAGGGT 001040 001041 TGAAGGGGCG TTTTTTGGCT GAGGGCAACG GACCAGTAGA GGCTGAGCAG CTGAAAGTAC AGGTGCCAAG GGGGTGGCTG 001120 001121 AAGGAGTAAG ATCCCATTGA TGGGATGAAG TGGGATCATA ACAGATGACA GGTTGAACAG AAAGGCTATC TCCATGCATG 001200 001201 AGGCAGCAGG ATGCAGATGT ACACACTCCC TTGGAGGCTC ACAGTGGGAA GTGAAAGTTC CTGCATTTTG AACTTTCCTC 001280 001281 CCTCTGTGAA TTAGGAGGTG AGGTTATCTA TTAGGCACGT GGGTGAGTAA GCAGTTGGAA CCAAGTGGTG AATGTTTATA 001360 001361 GAAGAGGGTT CTGACCAAAG ACAAAGATTG CTCAATGGCA CTGAGGTCCA ACCGCAGTTG AAAGTGGAAG TGCACACAGA 001440 001441 TTTGAAAAAA ATCAAGGCCT TGTAAGGCCA ATTGTAAGGC CATACTTGAA AACATTCAGG GTGGCAGAAT TTGGGATGAA 001520 001521 GACTGCAAAG CAGAATTGAG GCCTCAGTGA CTCCTGCATA GTGACTGTGA GATTGATAGA TAACAGAGAA CTGGTGAAGT 001600 001601 AACCAGATGG CATTTGGGCC TTCTGACCCT TTCCAGACTT CATGGAAGTG GCAGAAAACT GTAGCCAACA TCAGGGCCTC 001680 001681 AAATTGTGGT TCCACCAGTG ACTAGCTACA TGGCCTTGGG CAAGTCAATT TAACCTCTCT GTGCCTCACT TGCCTTATCA 001760 001761 GTAACATGAA GACATAATAG TATCCTCAAG TAAAGTGCTT ACAATAAGGC CAGCCACATG TACCAGAGCA CTAAATGTCA 001840 001841 GCATCATGAC CATTTCTCAT TTGAACAATG AGGGCTTTGT TAACAGTCTC TAAGGCACAG ATTCTTAAAT ATTTTGGTCT 001920 001921 CAGAATCTTT TTACATTCTT AAAAATTGTC GAAGACGCCA AAGAACCTTT TTTTTCTCCA GCCTGGGTGG CAGAATGAGA 002000 002001 CTGTCTCAAA CAAACAAACA AACAAACAAA AACGTAGTCA CTTAAAAACA GTAATAAACC CACTATCTAG TAACAGAACA 002080 002081 CATTTTAAAG AAAAATAACT TATTTTTTCC CAAAAAATGT GGAAGTACGA TATTGTTTTT CAGATCTCTT TAATGTTTGG 002160 002161 CTTAAATGAA GACAGCTGGA TTCTCTTCTT CTGCATTCAA TCTGTTAGGA TGTGCTGTTT GCTGAAAGCA TGAAAATCCT 002240 002241 AGCACCTCAC CTCACCTCTT GGGGACCTTG GACCGCACTT TGAGAACCAT TAGTTTTTCT TTCAGCTCTA CATCATTCAC 002320 002321 AGCCGGGCCT GGTGGCTCAT GGCTGTAATC CCAGGACTTT GGGAGGCTGA GGTGGGTGGA TCACCTGAGG CCAGCAGTTT 002400 002401 GAGACCAGCC TGGGCAACAT GGTGAAACCC CGTCTCTACT AAATATACAA AAATTAGCCA GGCGTCATGG CACCCTCCTG 002480 002481 TAGTCCCAGC TACTCAGGAG GCTGAGGCAG GAGAATCACT TGAACCCGGG AGGCAGAGGT TGCAGTGAGC CGAGATCGCA 002560 002561 CCACTGCACT CCTGCCTGTG CGACAGAGAG AGGCTCTGTC TCAAAAAATA AATAAATAAA TAAATAAATA AATAATTTGT 002640 002641 TCATTCACTC ACTCATTCAA CACTACTGGA TCCCAGAGAC AAAGAACAAT GTGGTCGCTG CCTTTGAGGA GTCTAGTTGA 002720 002721 GAAAAAAGAT GAAAACGAAT TAAAAATTAC AGCACGACAT GAGTGAGCAG AGGAGGAAGT TAGGAAATTA CTGGTTTGCC 002800 002801 TAAGGGAGGC AGGGAAGGCT TACAGGAGTA CAGGGAACCC GAATTTTGAC TTTACTTTCC TATGCTCCAC CTAAGCAGAA 002880 002881 GGAAGAGTAT GCACAAAGGC ACAGGGGCAG GAATTAATAC AGTACAAGGA AGCCCAGGGT GCGCTGGCAG GAAGAGTCCG 002960 002961 TATGCTGGAA AAGCACGTTG GGCCTTAAAG TTACATTTCA TCCTACAAGC CCCAGGAGGC TGGGGTGATG AGAGCTTGCT 003040 003041 TTTCTTTTTT TTTTGAGAGG GAGTCTCGCT CTGTCACCCA GGTCTGGACG CGATCTCGGC TCACTGCAGT GGAACAAAAA 003120 003121 TCATTTGGTA GACAATTTGG TATAAGGATT TAAATTAATC CTTCTTGATC TTCTTTTCTT TTTTGAGACA GAGTGTCACA 003200 003201 CTGTCACTCA GACTAGGATG TGGTGGTACA ATCACGGCTC ACTGCAGACT CGACCTCCTG GGCTCAAGCA ATCCTCCCAC 003280 003281 CTCAGCCTCC TGAGTATTTG GGACCAAAGG CGGATGCCAC CACGCCCAGC TAATTTTTTT TTTTTTTTTG AGACGGAGTC 003360 003361 TCACTCTGTC ATCGACTGAA AAAAATGAAG TAACTGTCGA AAACAAAGTT ATCTGTTTAG TTAGCTAACC CTCTGCAAAA 003440 003441 CCAAGCAATG AAATCTCTAT ATTTACTCTT AGTCCCTCCT GCAGTTCAGT ACTGTTGTAG GCTTTCCTAT CTGCTCCACC 003520 003521 ATTTTATCAG ACTACAGCAC TGATAATGCC TTAATCTCTA TACAATTTAT TTATAGACAT CACTTACCCA TCAGGAGACA 003600 003601 ATGGGATCAG CGTTGTTCTC CCCATTTTTA CAGCCCAAGA AATTGAGGCT CCTGATACCC AGGATCACAT ATGCCAACAC 003680 003681 CGTAAAATGC TCAGAAAGGC ATCGACACAG AGCTTTACTT AATACCCTTC TTTCTACTCC ACCACACCCC ATTTACGGCC 003760 003761 AGGTTGGATC TCTTTCTACA AGAGAAATGG A |
Predicted Small Protein
Name | NONHSAT071965_smProtein_2861:3055 |
Length | 65 |
Molecular weight | 6990.0665 |
Aromaticity | 0.125 |
Instability index | 61.284375 |
Isoelectric point | 10.6295776367 |
Runs | 9 |
Runs residual | 0.00796875 |
Runs probability | 0.0337494357102 |
Amino acid sequence | MLHLSRRKSMHKGTGAGINTVQGSPGCAGRKSPYAGKARWALKLHFILQAPGGWGDESLL FFFF |
Secondary structure | LLLLLLLLLLLLLLLLLEEELLLLLLLLLLLLLHHHHHHHHHHHHHHEELLLLLLLHHHH EEEL |
PRMN | - |
PiMo | - |