NONHSAT071965

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Annotated Information

Transcriptomic Nomeclature

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Function

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Regulation

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Expression

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Allelic Information and Variation

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Evolution

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Labs working on this lncRNA

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Basic Information

Transcript ID

NONHSAT071965

Source

NONCODE4.0

Same with

,

Classification

intergenic

Length

3791 nt

Genomic location

chr2+:85187605..85196649

Exon number

7

Exons

85187605..85187703,85189146..85189860,85190510..85191116,85192111..85192664,85193268..85194399,85195507..85195772,85196231..85196649

Genome context

Sequence
000001 ATGAATACCA CAGCTTCCTG ACCTACCCAA ATGGACACCT TTATCTCCAC TGGCAATTTT TCTTTTTTGA CAGAGTCTCA 000080
000081 CTCTGTCTCT CAGGCTGGAG CCATCCAATC TTTACATGTT TTATTAAAAA TAAAAAATGA GGACAGGTGC CATGGCTCAC 000160
000161 GCCTGTAATC CCAGCACTTC GGGAGGCTGA GGTGGGAGGA TCATTTGATG CCAGGAATTT GAGACCAGCA TGAGCAACAT 000240
000241 AGCAAGACCT CAACTCTAAA AAAAAAAAAA AAACTTAAAA TTAGCTGGGC CTGGTGGTAC ATGCCTGTAG GCTCAGCTAC 000320
000321 TCAGGAGAGT GAGGGTGGGA GGATCGCTTG AACCTGGGAG GTCGAGGCTG CAGTGAGCCA TGATCATGCC ACTGTACTCC 000400
000401 AGCCTGGATG ACAGAGCAAG ACCCAGTCTC AAAAAAACAA AAACAATAAT GACATCAGGC TGTACATACA TAATTTAGAA 000480
000481 AAGAATGTTT TGTAACCTGC TTTTTTCACT AAAAACACAT CATATTTCTA GTTCATTACC CATTTTTAGT TGCTGCTTTT 000560
000561 GGTTTGGATA GACAATAATT TATAGGTTTT CAATTTTAAA TATTAAAAAG AACACTGTGA TAAACATTCT TGTGTCTAAA 000640
000641 ATCTTTGCAT CTATCAGTAA TTACTTAAAT AGACTGAGTT GAGCTGGGAT TACTATGGCA AAGAATGGGC AAAAATCTAT 000720
000721 TGCTCTTGAA ACCTACCATA AAATCCCATT TGGAATGCTT GTAACAAGTC ATATTCCTTT CTTGACATCC TCATTATCAA 000800
000801 GTATTATTAA AAGTACTAGG CTGATGACTT TGCTCAATCC AATAGGGGAT ACAAAAACAG CAAAGACATG AAAGAGAAGA 000880
000881 TGATGATAGT GGTATCCCAG AAAATGAGAG GGTAACCAAC AGCACCAAAA GTCAGGCAAT CAGATAAACC AGTTTCTAAG 000960
000961 CTGAGGAAGG GGAGTGACAA TTCTTTCAAG AAGATTGTCC ACAGAGAGAA ACAATAGGGT AATAACCAGG AGTGCAGGGT 001040
001041 TGAAGGGGCG TTTTTTGGCT GAGGGCAACG GACCAGTAGA GGCTGAGCAG CTGAAAGTAC AGGTGCCAAG GGGGTGGCTG 001120
001121 AAGGAGTAAG ATCCCATTGA TGGGATGAAG TGGGATCATA ACAGATGACA GGTTGAACAG AAAGGCTATC TCCATGCATG 001200
001201 AGGCAGCAGG ATGCAGATGT ACACACTCCC TTGGAGGCTC ACAGTGGGAA GTGAAAGTTC CTGCATTTTG AACTTTCCTC 001280
001281 CCTCTGTGAA TTAGGAGGTG AGGTTATCTA TTAGGCACGT GGGTGAGTAA GCAGTTGGAA CCAAGTGGTG AATGTTTATA 001360
001361 GAAGAGGGTT CTGACCAAAG ACAAAGATTG CTCAATGGCA CTGAGGTCCA ACCGCAGTTG AAAGTGGAAG TGCACACAGA 001440
001441 TTTGAAAAAA ATCAAGGCCT TGTAAGGCCA ATTGTAAGGC CATACTTGAA AACATTCAGG GTGGCAGAAT TTGGGATGAA 001520
001521 GACTGCAAAG CAGAATTGAG GCCTCAGTGA CTCCTGCATA GTGACTGTGA GATTGATAGA TAACAGAGAA CTGGTGAAGT 001600
001601 AACCAGATGG CATTTGGGCC TTCTGACCCT TTCCAGACTT CATGGAAGTG GCAGAAAACT GTAGCCAACA TCAGGGCCTC 001680
001681 AAATTGTGGT TCCACCAGTG ACTAGCTACA TGGCCTTGGG CAAGTCAATT TAACCTCTCT GTGCCTCACT TGCCTTATCA 001760
001761 GTAACATGAA GACATAATAG TATCCTCAAG TAAAGTGCTT ACAATAAGGC CAGCCACATG TACCAGAGCA CTAAATGTCA 001840
001841 GCATCATGAC CATTTCTCAT TTGAACAATG AGGGCTTTGT TAACAGTCTC TAAGGCACAG ATTCTTAAAT ATTTTGGTCT 001920
001921 CAGAATCTTT TTACATTCTT AAAAATTGTC GAAGACGCCA AAGAACCTTT TTTTTCTCCA GCCTGGGTGG CAGAATGAGA 002000
002001 CTGTCTCAAA CAAACAAACA AACAAACAAA AACGTAGTCA CTTAAAAACA GTAATAAACC CACTATCTAG TAACAGAACA 002080
002081 CATTTTAAAG AAAAATAACT TATTTTTTCC CAAAAAATGT GGAAGTACGA TATTGTTTTT CAGATCTCTT TAATGTTTGG 002160
002161 CTTAAATGAA GACAGCTGGA TTCTCTTCTT CTGCATTCAA TCTGTTAGGA TGTGCTGTTT GCTGAAAGCA TGAAAATCCT 002240
002241 AGCACCTCAC CTCACCTCTT GGGGACCTTG GACCGCACTT TGAGAACCAT TAGTTTTTCT TTCAGCTCTA CATCATTCAC 002320
002321 AGCCGGGCCT GGTGGCTCAT GGCTGTAATC CCAGGACTTT GGGAGGCTGA GGTGGGTGGA TCACCTGAGG CCAGCAGTTT 002400
002401 GAGACCAGCC TGGGCAACAT GGTGAAACCC CGTCTCTACT AAATATACAA AAATTAGCCA GGCGTCATGG CACCCTCCTG 002480
002481 TAGTCCCAGC TACTCAGGAG GCTGAGGCAG GAGAATCACT TGAACCCGGG AGGCAGAGGT TGCAGTGAGC CGAGATCGCA 002560
002561 CCACTGCACT CCTGCCTGTG CGACAGAGAG AGGCTCTGTC TCAAAAAATA AATAAATAAA TAAATAAATA AATAATTTGT 002640
002641 TCATTCACTC ACTCATTCAA CACTACTGGA TCCCAGAGAC AAAGAACAAT GTGGTCGCTG CCTTTGAGGA GTCTAGTTGA 002720
002721 GAAAAAAGAT GAAAACGAAT TAAAAATTAC AGCACGACAT GAGTGAGCAG AGGAGGAAGT TAGGAAATTA CTGGTTTGCC 002800
002801 TAAGGGAGGC AGGGAAGGCT TACAGGAGTA CAGGGAACCC GAATTTTGAC TTTACTTTCC TATGCTCCAC CTAAGCAGAA 002880
002881 GGAAGAGTAT GCACAAAGGC ACAGGGGCAG GAATTAATAC AGTACAAGGA AGCCCAGGGT GCGCTGGCAG GAAGAGTCCG 002960
002961 TATGCTGGAA AAGCACGTTG GGCCTTAAAG TTACATTTCA TCCTACAAGC CCCAGGAGGC TGGGGTGATG AGAGCTTGCT 003040
003041 TTTCTTTTTT TTTTGAGAGG GAGTCTCGCT CTGTCACCCA GGTCTGGACG CGATCTCGGC TCACTGCAGT GGAACAAAAA 003120
003121 TCATTTGGTA GACAATTTGG TATAAGGATT TAAATTAATC CTTCTTGATC TTCTTTTCTT TTTTGAGACA GAGTGTCACA 003200
003201 CTGTCACTCA GACTAGGATG TGGTGGTACA ATCACGGCTC ACTGCAGACT CGACCTCCTG GGCTCAAGCA ATCCTCCCAC 003280
003281 CTCAGCCTCC TGAGTATTTG GGACCAAAGG CGGATGCCAC CACGCCCAGC TAATTTTTTT TTTTTTTTTG AGACGGAGTC 003360
003361 TCACTCTGTC ATCGACTGAA AAAAATGAAG TAACTGTCGA AAACAAAGTT ATCTGTTTAG TTAGCTAACC CTCTGCAAAA 003440
003441 CCAAGCAATG AAATCTCTAT ATTTACTCTT AGTCCCTCCT GCAGTTCAGT ACTGTTGTAG GCTTTCCTAT CTGCTCCACC 003520
003521 ATTTTATCAG ACTACAGCAC TGATAATGCC TTAATCTCTA TACAATTTAT TTATAGACAT CACTTACCCA TCAGGAGACA 003600
003601 ATGGGATCAG CGTTGTTCTC CCCATTTTTA CAGCCCAAGA AATTGAGGCT CCTGATACCC AGGATCACAT ATGCCAACAC 003680
003681 CGTAAAATGC TCAGAAAGGC ATCGACACAG AGCTTTACTT AATACCCTTC TTTCTACTCC ACCACACCCC ATTTACGGCC 003760
003761 AGGTTGGATC TCTTTCTACA AGAGAAATGG A
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Predicted Small Protein

Name NONHSAT071965_smProtein_2861:3055
Length 65
Molecular weight 6990.0665
Aromaticity 0.125
Instability index 61.284375
Isoelectric point 10.6295776367
Runs 9
Runs residual 0.00796875
Runs probability 0.0337494357102
Amino acid sequence MLHLSRRKSMHKGTGAGINTVQGSPGCAGRKSPYAGKARWALKLHFILQAPGGWGDESLL
FFFF
Secondary structure LLLLLLLLLLLLLLLLLEEELLLLLLLLLLLLLHHHHHHHHHHHHHHEELLLLLLLHHHH
EEEL
PRMN -
PiMo -