NONHSAT071839
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT071839 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intergenic |
Length |
1103 nt |
Genomic location |
chr2+:78169364..78208440 |
Exon number |
6 |
Exons |
78169364..78169425,78174151..78174300,78175271..78175410,78187674..78187885,78192534..78192764,78208133..78208440 |
Genome context |
|
Sequence |
000001 ATTATTTTAT ACCCTTTGCA TATTTGATGG TATTTCATTT AGCTGCAATG TTATTCCAAT ACGTTCTTTG TGAAATCCTT 000080
000081 AGGTGGCCAA CCACGAGACC ACGGCTGCTT CTATGTTCCT CATTTCTTCA TATTAAGCTT ACAGGGGACC CCTGAATTCC 000160 000161 CATTGCATTG TCATCACAGG GTTTTGAAGC AACTTGTACT TCTTTTACCA TAAGAGTTGT GCAATGCCCA AATGGTATTA 000240 000241 TCAACCAAGG CTTTTCTGCT ATCCAAATAT TCTTGGGTAA TCCAAAGTCA CATCAAAATG TACAAACGTT TATCATATGC 000320 000321 TATCCATTTA GCTGGGATCT CTAATGGAAC AATTGCCATA CCAGGGGTTT TCTAGTGTCT AGTTTTAGTT TTATAATTAG 000400 000401 TGTCTGATCA GTCATTGTCC ATGATAGACA ATTGTTAACT ATTCAGATGA TCTTTTCTGT CAAAGACCTT AATTTCATAA 000480 000481 ACACAAAGTA CATATTTCAA CACATTATTT GGCTTCTAGA AACTTTTCTT ATGGCTCCCC TTCTTGAAAA TATTTTTTTC 000560 000561 TTGATAACTT CACCGCCTAT CCCAAAACCT GTAAGAACTA ATGATAATCC ATCTCCCTTC GCTGACTCTC TTTTCGGACT 000640 000641 CAGCCCACCT GCACCCAGGT GAAATAAACA GCTTTACTGC TCACACAAAG CCTGTTTGGT GGTCTCTTCA CATGGACGCA 000720 000721 CATGAAATTT GGTGCCCTGA CTGAGATCGG GGGACCTCCC TTGGGAGATC AATCCCTTCC TCTTGTTCTT TGCTCACTAC 000800 000801 AAATACCTCT GTGCACACAA ACTAGAAACC CAGGAGAAAC AGGTGACTTC CTGGACACAT TTAAACTCCC AGGATTGAAC 000880 000881 CAGGAATAAA TTGAATCCCT GAACAGACCA ATTACAAGTT CTGAAGTTAA ATTGGTTAAA AAAAAAAAAT AAAGGCCTAA 000960 000961 CAACCAGAAA AAAAAGTCTA GGACCTGATG GATTCACAGC CAATTTCTAT GAGATATATA AAGAAGAGTG GGTACCATTC 001040 001041 TCACAGAAAC TATTCCAAAA GTTTGAGGAA GAGGGACTCC TTCCTAACTC ATTCTATGAG ACC |
Predicted Small Protein
Name | NONHSAT071839_smProtein_446:661 |
Length | 72 |
Molecular weight | 8146.5211 |
Aromaticity | 0.140845070423 |
Instability index | 60.4647887324 |
Isoelectric point | 6.52203369141 |
Runs | 7 |
Runs residual | 0.0499629355078 |
Runs probability | 0.0270017917077 |
Amino acid sequence | MIFSVKDLNFINTKYIFQHIIWLLETFLMAPLLENIFFLITSPPIPKPVRTNDNPSPFAD SLFGLSPPAPR |
Secondary structure | LEEEEELLLLLLHHHHHHHHHHHHHHHHHHHHHHLHHHHLLLLLLLLLLLLLLLLLLLLL LLLLLLLLLLL |
PRMN | LLLLLLLLLLLLLLLLLLLHHHHHHHHHHHHHHHHHHLLLLLLLLLLLLLLLLLLLLLLL LLLLLLLLLLL |
PiMo | iiiiiiiiiiiiiiiiiiiTTTTTTTTTTTTTTTTTTooooooooooooooooooooooo ooooooooooo |