NONHSAT071697
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT071697 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intergenic |
Length |
4010 nt |
Genomic location |
chr2-:74644846..74648855 |
Exon number |
1 |
Exons |
74644846..74648855 |
Genome context |
|
Sequence |
000001 GCCCTTGGGC GGGGTGAGCG GCCGGAACGT GCCGCGGGCG GCGCGGTTGC CGGGGCAACT GTGGGCGGGG CGAGCGACCC 000080
000081 CGAGCCCGTG GTTGCCCAGG CGACTGTTAG GTGGCTTACG CGGCCCGGAT GCAGCAGAAA CACCAGCGTT GCTGCGACCG 000160 000161 CGTTGGCGAT GGCGCACGAA GGCTCGGTGA GCTTCAGTTC AGCTGGGGAT GCGCCAGAGC CAGGGTCGGC CGTTAAGGTC 000240 000241 GGTGTCGGGA ACAGTGGGCT GGCTCTGGGC CGCCCAGTGC CCCTACTTGC TCCCGCCCAC CGCGCGGGAG TTTAGATGAC 000320 000321 CAAGGAAGCC ACGTCGGTAC TCGGGCAGAA AACCTACACC TGCACGGTGC CCACTCAAAC GCTTTGTTAC ACTCAAGCCA 000400 000401 TGAGGGAAAG GGTCAGTGGG TGGTGTAGAG CCCGAGAACA GGAAGTGGAT TTTGAAACAG CTAATGAATG TAGTAAGTCT 000480 000481 CTTACATGGT GGTGCGTATT TAAATGGATG AGCATTTAGA GAGGGAAGAT AACAGAAAAA ATCTATTTCG AGAATTTCAA 000560 000561 GAGGAAGAAA TATATTAAAT AATTCAGAGA CTGCACTTGA AAGTCAAATT GTTTAAGAGC CAATCAATTT TAAAATAAAG 000640 000641 AAAACGGggc cggtctcaat ggctcatgcc tgtaatccca gcactttgag aggctgaggc gggaggattg cctgagctca 000720 000721 ggagttcaag accagccagg ccaacatggc gagaccccgt ctcgactaaa atacaaaaaa ttagctggat gtggtggcgc 000800 000801 ggtgcctgta atcccagcta ctcgggaggc agaggcagga gaattgcttg aactcgggag gcggaggttg cagtgagccg 000880 000881 agatcgcgcc actgcgctct agcctgggtg acagagagag actgtctcaa aaaaaaaaaa aaaaaaaaaa aaaaaaGAAG 000960 000961 AAGAAGAAAG AAAACGGATT TGAAGAGCCT TTGTGCAAAA ATATCTCTGT CCCTTCTGGT CACCATCACG GGTGTCAGAT 001040 001041 GCGAGGCTGG GAGGGGAGGT CTAAGGAAAC AACTCTCTTT ACTCAGTCCA GTCAGCCCTG CTCTAGTCAA GCTTGGCCTG 001120 001121 GGCTATGGGC CACTCCTGGT GCTTGCTACA GGGCTGTTCT CACTGGTGGA TAGGGTTAAT GAGACTTCAG GGATTTTGAG 001200 001201 TTCTGCAAGA CTTAGGAAAC AGCAGATTTG GGGGGATAAT GAATTTTAGG AAACAGATAT GAGACAAGGT TTTAGCGGGG 001280 001281 CAATAGGCAA AGGTTTGGGA AGATCACATT TGGAAGTACA TTTTGGAAGG AACCAGGTTC AGGGAGACTG TTGTGGGGAA 001360 001361 TTGAGGGAGC TCCCAAGAGA TTGTTTGTAA ACTTTTTATG TCTCTAAAGT GAGTTTTGGG GACTAGTCTT Tttttttttt 001440 001441 taagtgatta caaaaggaaa caaactcatt gtagagaact tacaaaatag aaaagagcat aggaaggaaa cgtatcctct 001520 001521 gttatcattt tgaagttttc cttttgttga acacatagtg gtttacatat atgagatcat aattgatgtg taagtttgta 001600 001601 tcctgcttct ttcaattaac gttacatcat aaacatttgc tttatgccat tgcaaattct ttctaaagat tacctttaat 001680 001681 ggctgggttg gtggctcatg cctgcaaggt gggcagatca cttgaggcca gttcaagacc agtctggcca acatggcgaa 001760 001761 accccatctc tactaaaaat agaaaaaaaa ttagccaggc ctggtggcag gcgcctgtaa tcccagctac tccggaggct 001840 001841 gaggcaggag aattgcttga acctgggagg cagaggttgc agtgagccga gatcttgcca ctgcactcca gcctgggtga 001920 001921 cagagcgaga ttccgtctca aaaacaaaaa caaacaaaca aaaaaagatt acctttaatc attgcataat atttcagtat 002000 002001 atatagcatg tcaattattt attctctttt taaagacatg ttttcaatat tctgctatta taaaaatacc gcagagaatt 002080 002081 tgttggagaa tatattttta tcttcatttc agaaaatgcc ttttggttgt atttatagaa ctgaaattgc agggttgagg 002160 002161 aagtgaaaac attttttaat gtcttcatgc atactgTTGC AGCATGGTAT CACACTAAAC CTTTGCCAAT GCTGAGTATT 002240 002241 CTTGTTTTTA AAATAATTCC AATTTGATGA ACTAGAAATC AGAATGTCAA TACtatattt attagtcatc tacagtccct 002320 002321 ctcttgtgaa atgtcatgtc ctttgcttat ctttgggatc ttaaatggtt tttcttctta tAGTTTAAAT TTTTATTgca 002400 002401 atatagccca agctggactt gaactcctgg gctcaagcaa tccccctgcc tcagcctccc gagcagctgg tactgtgggt 002480 002481 gtgcgccact gtgcctggcC ATTTTTCTTC TTCTATtttt tattttatta gttttttttt tcttttttga gacagagtct 002560 002561 cgctctgtca cccaggctgg agttcagtag catgatctca gctcactgca aactctgcct cccgggttca agtgattctc 002640 002641 gtgcctcagc ctccctagta gctggaatta caggcgccca ccaccatgcc tggctaattt ttgtattatt agtagagacg 002720 002721 gggtttcacc atgttggcta ggctggtctc gaactcctga cctcaaatga tccacccacc tcggcctccc aaagtgctgg 002800 002801 gattacaggc gtgagccact gcgcccggcc ATTTTTTTTT TTATATGAGC TTTTAATTTA CTCGGGGATA TTTATCTTTT 002880 002881 TTCATATTTG TTGCAAATGT CTTTGAGAgg ctctggagtc agacagactt gcatgtgaat gcattctgac ttcactacat 002960 002961 cctacttgta tgatactggg taaattacCA TAAAATGGAG ATAAGAATAG TTGGTTAAAA AAAAAAAATG TAGAGAACTT 003040 003041 TTTAAGCTCC CCTGAGCCGG GGCTGTGCTC TTCTAAGTGG GACTCCGAGC CTGGGCTATT TCTGGCGCTG GCGCGGCTCC 003120 003121 AGGAAGGCAT CCGCATTTGC GACCAGGGGC GGCTGCGGTG GAGACTGGCC TGTCCTCAGC GCCCAGCACC GCTGCTCCCG 003200 003201 GCAAACCGGA GCATGCACCG CAGGCCAGCG GCCGAGTTCG CCCATCCCAG CCATCACTTT TCCAACTAGT CCTTAGAGAA 003280 003281 GGGAAGATGA GCGAGTCGAG CTCGAAGTCC AGCCAGCCCT TGGCCTCCAA GCAGAAAAAG GACGGCACTG AGAAGCGGGG 003360 003361 CCGTGGCAGG CCGCGCAAGC AGCCTCCGGT GAGTCCCAGG ACAGCGCTGG TAGGGAGTCA GAAGGAGCTC AGCGAAGTGC 003440 003441 CAACACCTAA GAGACCTCGG GGCCGACCAA AGGGAAGCAA AAACAAGGGT GCTGCCAAGA CCGGGAAAAC CACCACAACT 003520 003521 CTGGGAAGGA AACCAAGGGG AAGACCCAAA AAACTGGAGA AGGAGGAAGA GAAGGGCATC TCGCAGGAGT CCTCACTGGA 003600 003601 GGAGCAGCTT CCTTCTGGGA CTGGACAGCT TTGATCTGCT CCCAACcccc cacctcccac cccccacccc ttccctacac 003680 003681 ccaccatcac caccgcctcc agccaccacc ctcatcttcc acctgcacct tcaccaccac ACTACACAAC ACACCAGCCG 003760 003761 CTGCAGGTCC CTATGGGCTG AGTGGAGAGG ACTTTTCCCC TGGCCTCTTC CCATCCCTAC CCCCTCCTCC CCCCGTCCAC 003840 003841 CCACTCATAC ACATGTGCCC TCCTGGACAA GGCTAATGTC CTGCTTAGCC GCACCCTGCA CCTGCTGCGT CCCTGATCCC 003920 003921 TTGGTGGTGA CATTGCTCTC TGGGCTTTTG GTTTGGGAGC CACTTCTCTG CTCCTCCACT GTTGCCTCTG GCTTCCCATA 004000 004001 GAGGGGCCTG |
Predicted Small Protein
Name | NONHSAT071697_smProtein_2330:2530 |
Length | 67 |
Molecular weight | 7254.303 |
Aromaticity | 0.212121212121 |
Instability index | 60.3353030303 |
Isoelectric point | 7.73089599609 |
Runs | 9 |
Runs residual | 0.0142442387951 |
Runs probability | 0.0655851930361 |
Amino acid sequence | MSCPLLIFGILNGFSSYSLNFYCNIAQAGLELLGSSNPPASASRAAGTVGVRHCAWPFFF FYFLFY |
Secondary structure | LLLLHHHHHHHLLLLLLLHHHHHHHHHHHHHHHLLLLLLHHHHHHLLLLLLLLLLLLLLE EEEEEL |
PRMN | LLLLLLHHHHHHHHHHHHHHHHHHLLLLLLLLLLLLLLLLLLLLLLLLHHHHHHHHHHHH HHHHHH |
PiMo | ooooooTTTTTTTTTTTTTTTTTTiiiiiiiiiiiiiiiiiiiiiiiiTTTTTTTTTTTT TTTTTT |