NONHSAT071666
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT071666 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intergenic |
Length |
1600 nt |
Genomic location |
chr2+:74375108..74379516 |
Exon number |
3 |
Exons |
74375108..74375350,74375477..74375605,74375825..74379516 |
Genome context |
|
Sequence |
000001 ATCCCCTGGC CCTGGCTGAC TCGCCACCCC CGACACTGCA GCGCCTGCCG ACCTCGGGGC CCCGCCCTCT GCCTTCGCTC 000080
000081 GCGCCGCTCT CCTTCAGTCT CCCCAGGGCC TGTTTCATGG ATAGGGTCCC CTTGCCCGCG TGAAAGTCTC ATTCCTCCTC 000160 000161 AGCTCAGAAA CACTCCAAGG TGCGGGGACT CGTGGAAGGA TTTGATTCGC GCTTGAGAAA GATCGCTCCG CTCCTGTAAG 000240 000241 GAAGAGAGCG TGTAGGGGCT GCAACCAGAG ACACAGTCAG AAGCTCCGAG GCTACCGCGA TGGTCCAGGT GCCACAGGAC 000320 000321 ACAGCCTAAC AGAGGCCCAG GTTGGAGCCA TGGACCATGG AGTCATGAGA ATGGAAGGGA AGCTGACGCC ATGTGGGATG 000400 000401 GGGTAGAACT GTCCGCAAAT TCGTCCCGCC TCTGGAGTCT TCAGACCAGT CAAGGCCGAA ATTCAACCAA GCCTCTCCTC 000480 000481 TCTCTAGCTG TTATTTGTTT GCAGCACGCG GTCTGGTGGC ACCCTGCAGG ATTTACCAGC TTTTTGCCAA CATTCTGGCC 000560 000561 TATGCAATCA ATACGTCCCT TCAGCGTTGC ACTTGGATGG ATTGGACCTA TAGTTGTTAT ATATGGATAT TGTCTAATTT 000640 000641 ATTTATTACA GTATTAACTG ACTCCTATGT TCTGGCCTTC AGAATTTCTC CTTTGGATCA ATTACTAGCC TGTCTTACAT 000720 000721 TTTCTGCTTC ATTCTTTTAA AATGTTTAGA GATGATTTGC TAAGTTTTCT TCATTGCTGT CAATGATGCA ATTTAAACTG 000800 000801 TCAAAAAAAT TTTTTCTCAA GCCGGGTAGT AATGGTGAAC CATTCCCTTG CTATTCAGAC AGCATGGTTT AGATGAGGCG 000880 000881 CACCTATCCC CAGCTTTAGG AATGGAAACA GGACCCAAGT CTGGCTAATC AGAGACTGGT TTAGGGTCGG CCCCATGGTC 000960 000961 TGAGCCAGAC CAATGAGAAT TGGTAGAGGG ACTTCCTTTT GCAACTTCTA TTTTAGAATC GGGGGTATAT ATGCAGGCTT 001040 001041 GTTACAGAGG TATATTGCAT GGTGCTGAGG TTTGGAGTAT GAACGAATCC GTCCTTCAGG TAATGAGCAT AGTACCCAAT 001120 001121 AGGTAGTTTC AACCCTTGCC CCCTTCCTCC TTCCCCAGTC TTGTATTCCC CAGTGTCTGT TGTTCCCAGA CATTGATCTT 001200 001201 TTTCCTCTAT GTTGCTAAGC TGGTAGAAAG GCTGGAGTTG CTGGCAACCA TCTTTGCAAC CATGCAGGGA GAACTACTTT 001280 001281 GGAAATGAAG CAAGACAAAG AAGAAAACAG ATAAAAGGAG ACAAATGTTT GACTTTGTAC AGCTGGAAAC CAGCAATGCT 001360 001361 GGAAATGAGC ACTGAAGGCA GTTTAATGGG TTTGTCACTT GTAACCAAGT GACCCATGGC AAGCTCACAG ATTTGTATTG 001440 001441 GCAGAATTCC TCCTTTTCTT TATTTAAAAT GGTACTTTTG GCCAGGCAAG GTGGTTCACA CCTGTAATCC AAAGACTTTG 001520 001521 GGAGGCCGAG GCGCACTGAT CACCCAAGGT CAGAAGTTCG AGAACAGCCT GGCCAACATT GGCGAAACCC CATCTCCACC 001600 |
Predicted Small Protein
Name | NONHSAT071666_smProtein_596:739 |
Length | 48 |
Molecular weight | 5490.3667 |
Aromaticity | 0.212765957447 |
Instability index | 47.1425531915 |
Isoelectric point | 3.92962646484 |
Runs | 8 |
Runs residual | 0.00393617021277 |
Runs probability | 0.0352411234764 |
Amino acid sequence | MDWTYSCYIWILSNLFITVLTDSYVLAFRISPLDQLLACLTFSASFF |
Secondary structure | LLLEEHHHHHHHHHHHHHHHLLLLLLLEEELLHHHHHHHHHHHHHLL |
PRMN | LLLLLLLLHHHHHHHHHHHHHHHHHHHLLLLLLLLLLLLLLLLLLLL |
PiMo | ooooooooTTTTTTTTTTTTTTTTTTTiiiiiiiiiiiiiiiiiiii |