NONHSAT071590
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT071590 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
sense |
Length |
1713 nt |
Genomic location |
chr2-:73276215..73298418 |
Exon number |
3 |
Exons |
73276215..73277028,73285657..73285725,73297589..73298418 |
Genome context |
|
Sequence |
000001 TTCGAGCGGC TGCTCAGGGT CGCTCCGGGT TGTGCAGCTG CCCGCCCGGG ACGCAAAGTT CTAGTCTGGC CCTGGATGGG 000080
000081 AAGTTGGCGT GGCCGGGATG CCTTCTAACT TTTTCCCCCG GTGGGGACTG ACGTTCCTTT CGAGCTGCTG GCGGTGCCGC 000160 000161 CGGGCAGCGT CGCGCCCCGC GGTCACTCCC CAGCCCTGGC CCCCAAGCCG GGCTCGGCGC GCGCAGCAGG TTGAGGGGGC 000240 000241 GAGTGCCGAG GCGAGCGGCG GTCCGGCGTC CCCCGTCCCT GCTCTCCATC TCGGGCTGAG GATTCGCTGA CGCAGCAAGC 000320 000321 CGGCCGATGC CCTGAGGGGA CGCAGCCAGG GCGTGCGGGG GAAACGCTGT GTCATCCCCT GGGGCCGTCG TCCCTCCGAG 000400 000401 GGGCTGCCGC CTGGGAACCC CCCCCCAGCC TCTTCCTCGC TGTGTTCTCC GCGGAGGGTC Tcccgcgccc gggcccccgc 000480 000481 gccgccgggg ACTGGCTCTG GGCACACCCG CTCAGGCTCT TCGGGGCACG GCGACAGGGG TCCTTTCCCT CCGGGACCTC 000560 000561 CTCTGGGGCG TCGCCGACTC GGCCCTAGAC TGCGGAGGCG GGGGTGGAAC GCGGAGCCCG GGCGCCTGGT TGGGCCCGGA 000640 000641 GACCGGAGCC GGGGAGGGGC CGCTCCCGCG CCGCAGACCC TCGGGCTCCC GCGCCTCCCG CACCAATGAG ACGGAATTTA 000720 000721 TTAGGAAACA GGCAGAGAGA CCGCTGAAGT GAACCGGGGC TTGCCAGGGG TGGGCGGCAG CCGAGGCGGC CAGAAAAGAA 000800 000801 CTTTGAAGGA AGAAAGGAAA TTGTGCTAAG ACGTCCTTCT ATGGCCGCTT CAGGCACTTC TTGGATATCA TCGACCCTCG 000880 000881 CACACTCTTT GTCACTGAGg ctcacagctg gaggaaaatt tgcctcagga tgaatcacac ctttgggtct catccatacc 000960 000961 taatttagag gattctggat gagactctga cttcagactt ttgagttgct gctggaatga ctgacttttg gggctactga 001040 001041 gatggaatga atatttgtga gaaggacata aattttgggg ggccagggTG AGAtgctatg gctgaaatgt gtcccataca 001120 001121 aaattcaggt gttgaaactt aatggcaaat gtgatagtat taagaggtgg gatctttaag aggcaattag gccatgaggg 001200 001201 tccctccctc atgaatggaa ttaaggccct tgtaaaagag gcctggccgg gtatggtggc tcacggctgt aatcccagca 001280 001281 ctttgggagg ctaaggctca agaatcactt gagcccagga gtttgagacc agcctgggca acatggccag accccaactc 001360 001361 ttaaaaaaat ttttcaaaaa ttagctgggt gtcgtggcat gcacctatag tcccagctac tcgaatcggt tgagcctggg 001440 001441 aggtcgaggt tgcagtgaac tgtgatcacg ccactgcact ccagtctggg tgacagagca agacactatc tcaaaaaata 001520 001521 aaagaggttt cacacagggt ttggccctct tgccgttctg ttctgttgag tacacagcct tccttccctc agaaagatgc 001600 001601 cctcaccaga taccaaatgc tggttcttga tcttggactt ccagcttcca gaactgtgag aaataaattt ctgttcttta 001680 001681 taaattatct agtctgtggc attctgttat agc |
Predicted Small Protein
Name | NONHSAT071590_smProtein_1616:1711 |
Length | 32 |
Molecular weight | 3540.331 |
Aromaticity | 0.129032258065 |
Instability index | 43.4096774194 |
Isoelectric point | 9.30181884766 |
Runs | 5 |
Runs residual | 0.0399865591398 |
Runs probability | 0.0355944179473 |
Amino acid sequence | MLVLDLGLPASRTVRNKFLFFINYLVCGILL |
Secondary structure | LEEELLLLLLLHHHHHHHHHHHHHHHHHHHL |
PRMN | - |
PiMo | - |