NONHSAT070301
Please input one-sentence summary here.
Contents
Annotated Information
Transcriptomic Nomeclature
Please input transcriptomic nomeclature information here.
Function
Please input function information here.
Regulation
Please input regulation information here.
Expression
Please input expression information here.
Allelic Information and Variation
Please input allelic information and variation information here.
Evolution
Please input evolution information here.
You can also add sub-section(s) at will.
Labs working on this lncRNA
Please input related labs here.
References
Please input cited references here.
Basic Information
Transcript ID |
NONHSAT070301 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
antisense |
Length |
1982 nt |
Genomic location |
chr2+:42158746..42187179 |
Exon number |
6 |
Exons |
42158746..42159009,42159303..42159372,42160416..42160604,42162507..42163038,42163319..42163854,42186789..42187179 |
Genome context |
|
Sequence |
000001 AATTATGACT CTATTTTGGG TGTAATTTCC ATGAAATTAT TTATGAATCT TTTTTTCCCT AAGGGGTGGC CATAAATATC 000080
000081 ATCTTTAATG CATCTTCATT AGTAGCTTTC ATCTTCTGAT GGGCCTGCAT CTTTTGTTGG AAGTTGGATG TTGTTGGTAG 000160 000161 AAATGTTAAG TCCACATCTT AGGTGTACGG AGTTTGTATA AAATATGAAC TCTAATGTGT AGAATTTGCA GGTCGCTGAA 000240 000241 GTGTCACAGT CTGCTGAAAT GGGTCAGCAG GGCTTCCCTC TCTGCAGAGC CCTGGAGTCT CTTCCAAGTA GAAAATCACA 000320 000321 CTCTGTCCTT CAGCCCACAC AGAAGGCTGT CTCCAACTGC AGAAGGAAGT TCTTTCCATG GCCGCTGGAG CACCCTCCCC 000400 000401 ACTTGTGGGC ACCATGGTTC AAGTCTGCCC CAGTGATCCT CTCCTGTATA AACCTCCAGG TACAGATTAT GGAAATCAGG 000480 000481 AATCTCATCC AGCTGCTCAA ATAACAAAGA GGTTAGCAGT ATCTATTTTA CTTTAAGTTC TGGGATACAT GTGCAGAAGG 000560 000561 TATGGTTTGT TACATAGGTA TATGTGTGCC ATAGTGGATT GCTGCACCTA TCAACCCGTC ATCTAGGTTT AAGCCCCACA 000640 000641 TGCATTAGCT ATTTGTCCTG ATGCTCTCCC TCCCCTCCCC ACACCAGACA GGCCTTGGTG TGTGATGTTC CCCTCCCTGT 000720 000721 GTCCATGTGT TCTCACTGTT CAGCTCCCAC TTATGAGTGA GAACGTGTGG TATTTGGTTT TCTGTTCCTG TGTTAGTTTG 000800 000801 CTGAGGATGA TGGCTTCCAG CTTCATCCAT GTCCCTGCAA AGGACACGAT CTCATTCCTT CTTAGGGCTG CATAGTATTC 000880 000881 CATGGTATAT ATGTACAATA TTTTCTTCAT CCAGTCTATC ATTGATGGGC ATTTGGGTTG GTTCCATGTC TTTGCTATTG 000960 000961 TAAATAGGAG TGTACACTCT TGACCACTAC ACTGGAGCAA CAGGCCCTAG AAATAGTGAC CATATTCATT AACCAATTAG 001040 001041 AAACTAGTAT GTGGATCCTC ACTTTCTAGG AGTCTCAGAG GAGACAGTAG GCCCTGGAGA CACCCATGAT ACAAAACCAG 001120 001121 AGCGAGATGA AGACGCTCCA CTCACCTCTC CCCTCATTCT TGCCCAGAAA ATTTGCTCTA TCTTCCCCAT TTTTTACCCT 001200 001201 GCCCACATTA CCCACCACAA TTAGACAAAA GGCCTCAAGA AGTCTGCAGA GGGGCAGGAT GAGGGCAGGG GTCAGCTTTC 001280 001281 CTCTTTCAGT TGTTTTCTGA TTACTTTAGA CTTGGTCCAG CCAGGAAGAA TCCGTCACTC TCAGCAGGCA GTGGGTGGGG 001360 001361 AGAGGTACCA GCAGACTTAG AAGTATATAT GGAATGTATT AAACCGTGGT GCAAAAAGAA AGGCCTGAGA AGCTAAACCA 001440 001441 AAGAGGGAGA TGCAGTTGCA CAAAGTTAGG GGATTGAAAG AGCCCCCAAG GTAACAGAAG GTGCAACATA GTAAGAATTT 001520 001521 TAAGAGGTGA TAAAGGTAAC TTGCTGTCAA AAGAGGCAGA TATTACTAAA GAAACAAGTG AAATTGATTC CAAGAAAATG 001600 001601 TTAAAAGCTA CACCTCCTAT TTCTTAGTTA GTCTATCCCC GTTGTGGGGC TCTGCATATC CAAGCTGTCT TTGATTTCTC 001680 001681 CTCTGCCATG TTATTAGTAA CATCTGATCA ATTACTTGTG TCTCTCCCAT CCTTGCCCTT CACTCTATTT CCCCTTATCG 001760 001761 GTCTCACCTG GTTTAATCAC AGCACTCTCC AAACTTGCCT CTTCTCCTGC CCATCATCCA AAAGGACCTT CCTAAAACAG 001840 001841 ACCTGGTCCC ATTATCCCCT GAATGAAATT TTTTCATGTA AAGTTTATTA TATCATAATG CAAATACCCT TTAATCAAGC 001920 001921 AATTCCACTT CTATGAATTT ATAGATACAT GCACAAAATG ATGTACATAC AAAGGTATTC AC |
Predicted Small Protein
Name | NONHSAT070301_smProtein_704:874 |
Length | 57 |
Molecular weight | 6281.6063 |
Aromaticity | 0.107142857143 |
Instability index | 55.0517857143 |
Isoelectric point | 7.68121337891 |
Runs | 7 |
Runs residual | 0.0282982045277 |
Runs probability | 0.083150377268 |
Amino acid sequence | MFPSLCPCVLTVQLPLMSENVWYLVFCSCVSLLRMMASSFIHVPAKDTISFLLRAA |
Secondary structure | LLLLLLLLEEEEELLLLLLLHHHHHHHHHHHHHHHHHHHLLLLLLHHHHHHHHHLL |
PRMN | LLLLLLLLLLLLLLLLLLLLLHHHHHHHHHHHHHHHHHHHLLLLLLLLLLLLLLLL |
PiMo | oooooooooooooooooooooTTTTTTTTTTTTTTTTTTTiiiiiiiiiiiiiiii |