NONHSAT068691

From LncRNAWiki
Jump to: navigation, search

Please input one-sentence summary here.

Annotated Information

Transcriptomic Nomeclature

Please input transcriptomic nomeclature information here.

Function

Please input function information here.

Regulation

Please input regulation information here.

Expression

Please input expression information here.

Allelic Information and Variation

Please input allelic information and variation information here.

Evolution

Please input evolution information here.

You can also add sub-section(s) at will.

Labs working on this lncRNA

Please input related labs here.

References

Please input cited references here.

Basic Information

Transcript ID

NONHSAT068691

Source

NONCODE4.0

Same with

,

Classification

intergenic

Length

2344 nt

Genomic location

chr2-:2877827..3108805

Exon number

7

Exons

2877827..2879459,2879967..2880083,2948593..2948650,2949357..2949454,3108074..3108217,3108341..3108434,3108606..3108805

Genome context

Sequence
000001 AAAGGGTCTG TGCTGAGGAG GATTAGTAAA AGAGGAAGGG ACGCCTCTTT GCAGTTGAGA CAAGAGGAAG GCATCTGTCT 000080
000081 CCTGCTCGTC CCTGGGCAAT GGAATGTCTC CGTGTAAAAC CCGATTGTAT ATTCCATCTA CTGAGATAGG GGAAAACCGC 000160
000161 CTTAGGGCTG GAGATGTGAC AGGCGGGCAG CAATACTGCT TCAATAGATA CTAAGGGAAC TCAGAGGCCA GCGTGGATCG 000240
000241 TGGATCCTCC GTATGCTGAA CACCGGTCCC CTGGGTCCCC TTTTTCTTTC TCTGCCGTGG CTGTCACCCT GGGAATGAGT 000320
000321 CTGCCACGGT CCCGGGAATC CTCTCCCTGC TCTGGGACCC TGGGTTTTCT GCGTCCTGTA CTCTCTGTCT TTTGTTCATT 000400
000401 CATTTGTTTT TTGTTTATGC TCTTTTTTGA GTCCAGTCTT TCAGCAGTTT GAACATGTGC GTGCTTTTTT TTTTTTTTTT 000480
000481 TTGTCTATTT GTTTTGTTGA TATTTATCCC ACTGGGATTT CTTTGAGCTC AATAGTTTTA CATTAGCACT TTTAACATAT 000560
000561 TTTTCATAGT TATTTTAAAT TGCCATATGA TAGTAGGGCT TCTCCCCTTC CCCCACCTCT ACTGTCCCTT CCCCCTTACA 000640
000641 GGCATGAGGA ACCTTTTCTA TCCCTCCTGC CTCCCCAGAG AAAAAGGCAG GATACCCTGG GGTATGAGGT TTCCTGTAAA 000720
000721 TGCTGGGATC CTACTGCACA GTAGGGTGAT GGCGGTAACA GGAAGGTTTG CGTTTTTCAA AATAGCTGCG AGCACACCAG 000800
000801 GCTGAGTCAG CGGGGGTGCC CGGTGAGCAG CCTGGCAGCT GCCCGTTGTG CATGGGCAGG GGAAGCCAAG GGGCTCAAGC 000880
000881 CAGCCAGACC CTGGGTCCAG GGAGGTGACC TGGGCCACCC TGAGGCCAAG CCGGAGACAC CTGCGAGCCA TGTGCAGCAA 000960
000961 GCTCAGGAGG GCCTCCCTGA CCTGCCTTGG GAAAGTGTCC CTGGGCAGTG CTATCAACCC AGGTGACCCT GCGTGCTCCT 001040
001041 GGCTCAGTGC TTCGGTGCCT GGCCTATGTG GCCAAGGTGG CAGGGCTGCT GGGGGCCCTG CGAGGGCCGA GACCCTTAGG 001120
001121 CTGTAGAGGC TGTGGCACAG CACTGTGGGA TGGGGGAGCT GGCTGCACCC AGGCGGCCTG GGGCTCAGTG GCTTTCTGAA 001200
001201 AGCTTTCAAA GAGGTGAAGT GTGGCCCGTT CACACTGGGG CCAGGACATG GCGACATAGT GAGAGGGGGA GGCCCAGGTG 001280
001281 CAGGGGCCGG AGAGCTTATG CTTAGGGTGC AGTGGGAGGG CAAGGGTTGC CTCGCACATG GGAGACGCCA GGGCCGGGCT 001360
001361 GCGGGTGACA CTGTGGCCAG GCCTTCCTCC CTGGGCCTCA CCCTGAGCTG GGCAGACACT GACCGGGGCT GGCTCTGGCT 001440
001441 CTGGGCGGAG GTGCTGGGGG GCTCACTGCC CAGGTCATCT CCGCAGGGTC AGGGGTCTGA GCTGCTTTTA GCAGCAGCTT 001520
001521 CCCAGACACA CGACGCCAGT TTCCATTTCT CCTTCAGCAT CATTTCTCAG AAATATGGTT CTGTGGCCAT TCACCAACAA 001600
001601 CAGTTGGTGA AATGTGGCTC TGTTTCTGGG GAGCTGGTGA TATTTGGGTT TAAGTCCTGC AGATGACGTG GTGAGGGCTG 001680
001681 GTGGAAGAAA TTTGACAGGA GTGGAGAGAC CCTGGACCTA GACCTCACTG GGCCTTGCAC CCACTGTGGG ACTGTGGTCT 001760
001761 GGCACGGGCA TTTCTGAAGC TGTGGCCACG CCATTGCAGC ACGCATCACT CCTGCACACC CAGATGCAGA GCTCGGTGAG 001840
001841 AACCTCACTG TGGGCAGTGC CAGGCACAGC AGGTCCCACG TATTTGAGAT GCTCAGGAGC CCCAGGGCCT GGAGGGAGAC 001920
001921 TTTTGGGCCC ACATGCCCCA TGTTTGGGAA GGTTTGGGCT TAACCAGGGA ATAACATCAT GCATTTTGCA GCTCCCTTCC 002000
002001 AGCTGCAGAG CCAGACGTTC CGATATGAAG TTGGCTCCGT GCGTAAATCA CAGCAGGTAC TCAAAGCAGT GGTTACCGCT 002080
002081 CTCCTTATTC CTGCTTTCTC TTCCCTGAGT TCAAAAGCCT GCAAAGCCAG TTTTGGGAAA AAAAAAAAAA AAAAAAAGAA 002160
002161 AAGAAAACAA AACAAAGGAA AAAGAAAACC CACTCTAGTC CTTGTGGCGA GGTAAATACT GCAGAATTGA CTCTGGCATC 002240
002241 CTGAAATGTG GTGTGGCATC GTAACAGGGG AACAAGAATA TGGGAGCAAT TTAAACCAAA CAAGACTCAA AAATGACAGC 002320
002321 AATCACGGAC CTGAACACGA CGCA
[back to top]

Predicted Small Protein

Name NONHSAT068691_smProtein_1823:2107
Length 95
Molecular weight 10063.7016
Aromaticity 0.063829787234
Instability index 62.0606382979
Isoelectric point 10.450012207
Runs 10
Runs residual 0.0224329324699
Runs probability 0.0362745098039
Amino acid sequence MQSSVRTSLWAVPGTAGPTYLRCSGAPGPGGRLLGPHAPCLGRFGLNQGITSCILQLPSS
CRARRSDMKLAPCVNHSRYSKQWLPLSLFLLSLP
Secondary structure LLLLEEEEEEEELLLLLLLEEEELLLLLLLLLLLLLLLLLLLLLLLLHHHHHHEELLLLL
LLLLLLLLLLLLLLLLLLLLLLLLLLHHHHLLLL
PRMN -
PiMo -