NONHSAT068615

From LncRNAWiki
Jump to: navigation, search

Please input one-sentence summary here.

Annotated Information

Transcriptomic Nomeclature

Please input transcriptomic nomeclature information here.

Function

Please input function information here.

Regulation

Please input regulation information here.

Expression

Please input expression information here.

Allelic Information and Variation

Please input allelic information and variation information here.

Evolution

Please input evolution information here.

You can also add sub-section(s) at will.

Labs working on this lncRNA

Please input related labs here.

References

Please input cited references here.

Basic Information

Transcript ID

NONHSAT068615

Source

NONCODE4.0

Same with

,

Classification

intergenic

Length

1520 nt

Genomic location

chr2-:779837..864112

Exon number

4

Exons

779837..780588,806037..806257,849658..849896,863804..864112

Genome context

Sequence
000001 ACCTCGCAGG CAGCGCGTTT ACGTCAGAGC GCCCGAGTCC ACGGACCTCG CAGGCAGCGC GTTTACGTCA GAGCTCCCGA 000080
000081 GTCCACGCAC CTCGCAGGCA GTACGTTTAC CTCAGAGCTC CCGAGTCCAC CGACCTCGCA GGCAGCGCGT TTACGTCAGA 000160
000161 GCTCCCGAGT CCACGCACCT CGCAGGCAGT GTATTTACAT GGAAATTGGA TCGAGGCACT GACGTTTAAA TCTTGGCTCC 000240
000241 TGCTCCTGCC GTCTAGACAA AGGGCGCACC CATTGCCGTC TCAGACACCA GAGGCTCCCA CTTGACCAGA AACCCACTCC 000320
000321 TGCGATGAAG GTTGAATCTC TTCCTGAGGG CAGAGCTCTT ACCGCCCACT CGCCCCTCTA AGTTCCCACC TCCCAAGGCC 000400
000401 GTGTCTCTGG GGATGAAGTT TCCAACACAC AAACATTGGG GGCACCTTCA AGCCACGGTG TCCTGTAAAC CAGCGTTCCA 000480
000481 GCATTTGCCA AATGGTGTTT CTTTTACCAG GAGATAAGGA CTCTGATCAG GTCCTTTGGA AAGAGCAAGG GAAGCTGTTC 000560
000561 ATGTTCTATC CTGCGTGTTC TCGAGAAAGT TTTGATGACA GAAAACATCA CACAGAAAGG GGAAGGCATC GCAAGTTTCC 000640
000641 AGCTCCATGG ATTTTTGCAA ACTGAGCACA TTTGTGGGCC AGGAGTGGGG CCCACAGCGA GAATATCCTT CCTGCTGCTC 000720
000721 CTGCCGTCCA TCCACCAGCA CAGCCAGTTC CCAGCTGTGG AACACACAGA GCTGTGCACT GTTGAGTTGA TCACGATGAG 000800
000801 AACAGTGAGT GTCTCTCACC TGTGGCTGCA CTTGCTGGAA GCACCGCCTG CTCTGGCCTC TTTGCTCCAG AACATTCCCT 000880
000881 GCTGAACAGT GACACCAGGG AAGGCCAAGG ATGGGCACAC AAGGCTCAGT CCTTCACCTG ATGGCGGCTT GGCCATGTTC 000960
000961 ATCTTTCCCT TTTCTCAAAG ACCTGTGTGG GGCCAGAGAA AGCTGGGGTT TCCGGTGGCC TGCAGTGTGG CAGAAAGCAG 001040
001041 AGCCTTCCAC TGGGAAAAGG GGAAAAAGGG AATTCTTCCG AAGAGAAGGA TGAAGCCAGC AGCAGGGGTC CCGGCAGGCC 001120
001121 TGACCCCCAT GGAGCTGATG AGGCCGAGTG TCAGGAAGCA CTCCCATTGT CCTCGAAAAC AGACACAGGT CAACCTGCGT 001200
001201 TACGGGGTCT GCGAGGTCAT CAGATAACCC CACAGTGTCG AATACTGTAA CTACATGCCT GCCTAAGATG ACCTGGTATA 001280
001281 CTGTAGGTGC ACACAAGATT CTCCATAGTG AAAGTACATA TACAATTGTT GCTAATTTTT GATCCTAGAA AATCCACTGG 001360
001361 ATTGATACTT TAGAAGAGGA TAATGGATAA AATCAATCGA TCGGAAAATT CAAATATTTA GAAAATACTA GTTTCAATCT 001440
001441 ACTGTAAAAA TATCATAAAT TTGTACTGAA CTATTTTTCC TTATTACAAA AATATTCGAG CAATAAAAAT GTCGGATATT 001520
[back to top]

Predicted Small Protein

Name NONHSAT068615_smProtein_491:664
Length 58
Molecular weight 6867.7681
Aromaticity 0.157894736842
Instability index 58.4738596491
Isoelectric point 8.97833251953
Runs 11
Runs residual 0.0390350877193
Runs probability 0.0391675097559
Amino acid sequence MVFLLPGDKDSDQVLWKEQGKLFMFYPACSRESFDDRKHHTERGRHRKFPAPWIFAN
Secondary structure LEEEELLLLLHHHHHHHHLLLEEEEELLLLLLLLLLLLLLLLLLLLEELLLLLEELL
PRMN -
PiMo -